Experiment: Vancomycin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1760 and Pf6N2E2_1761 are separated by 421 nucleotides Pf6N2E2_1761 and Pf6N2E2_1762 are separated by 862 nucleotides
Pf6N2E2_1760 - Oxidoreductase, at 2,078,291 to 2,079,295
_1760
Pf6N2E2_1761 - Transcriptional regulator, LysR family, at 2,079,717 to 2,080,400
_1761
Pf6N2E2_1762 - putative lipase, at 2,081,263 to 2,082,180
_1762
Position (kb)
2079
2080
2081 Strain fitness (log2 ratio)
-2
-1
0
1 at 2078.741 kb on + strand, within Pf6N2E2_1760 at 2078.842 kb on + strand, within Pf6N2E2_1760 at 2078.947 kb on + strand, within Pf6N2E2_1760 at 2078.947 kb on + strand, within Pf6N2E2_1760 at 2078.947 kb on + strand, within Pf6N2E2_1760 at 2079.013 kb on + strand, within Pf6N2E2_1760 at 2079.025 kb on + strand, within Pf6N2E2_1760 at 2079.318 kb on + strand at 2079.332 kb on + strand at 2079.332 kb on + strand at 2079.359 kb on + strand at 2079.360 kb on - strand at 2079.406 kb on + strand at 2079.406 kb on + strand at 2079.406 kb on + strand at 2079.432 kb on + strand at 2079.433 kb on - strand at 2079.616 kb on - strand at 2079.668 kb on + strand at 2079.682 kb on + strand at 2079.682 kb on + strand at 2079.684 kb on + strand at 2079.970 kb on - strand, within Pf6N2E2_1761 at 2080.011 kb on - strand, within Pf6N2E2_1761 at 2080.011 kb on - strand, within Pf6N2E2_1761 at 2080.064 kb on - strand, within Pf6N2E2_1761 at 2080.064 kb on - strand, within Pf6N2E2_1761 at 2080.072 kb on + strand, within Pf6N2E2_1761 at 2080.073 kb on - strand, within Pf6N2E2_1761 at 2080.170 kb on - strand, within Pf6N2E2_1761 at 2080.213 kb on - strand, within Pf6N2E2_1761 at 2080.479 kb on + strand at 2080.797 kb on - strand at 2080.918 kb on - strand at 2080.922 kb on + strand at 2080.953 kb on + strand at 2080.953 kb on + strand at 2080.954 kb on - strand at 2080.965 kb on - strand at 2080.965 kb on - strand at 2081.152 kb on + strand at 2081.292 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.12 mg/ml remove 2,078,741 + Pf6N2E2_1760 0.45 +0.1 2,078,842 + Pf6N2E2_1760 0.55 -0.7 2,078,947 + Pf6N2E2_1760 0.65 -0.2 2,078,947 + Pf6N2E2_1760 0.65 -0.9 2,078,947 + Pf6N2E2_1760 0.65 -0.4 2,079,013 + Pf6N2E2_1760 0.72 -1.9 2,079,025 + Pf6N2E2_1760 0.73 -0.1 2,079,318 + +0.3 2,079,332 + -0.3 2,079,332 + +0.4 2,079,359 + -0.9 2,079,360 - -1.3 2,079,406 + +1.6 2,079,406 + +0.9 2,079,406 + +0.6 2,079,432 + -0.6 2,079,433 - +1.7 2,079,616 - +0.6 2,079,668 + +0.1 2,079,682 + +0.2 2,079,682 + +0.7 2,079,684 + +1.1 2,079,970 - Pf6N2E2_1761 0.37 +0.9 2,080,011 - Pf6N2E2_1761 0.43 -0.3 2,080,011 - Pf6N2E2_1761 0.43 -0.6 2,080,064 - Pf6N2E2_1761 0.51 +0.3 2,080,064 - Pf6N2E2_1761 0.51 -0.1 2,080,072 + Pf6N2E2_1761 0.52 +0.9 2,080,073 - Pf6N2E2_1761 0.52 +1.2 2,080,170 - Pf6N2E2_1761 0.66 +1.7 2,080,213 - Pf6N2E2_1761 0.73 +0.7 2,080,479 + +0.9 2,080,797 - +0.2 2,080,918 - -0.4 2,080,922 + +0.0 2,080,953 + -0.3 2,080,953 + +0.3 2,080,954 - +0.0 2,080,965 - -0.6 2,080,965 - -0.9 2,081,152 + +0.5 2,081,292 - +0.2
Or see this region's nucleotide sequence