Experiment: Vancomycin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_126 and Pf6N2E2_127 are separated by 699 nucleotides Pf6N2E2_127 and Pf6N2E2_128 overlap by 1 nucleotides
Pf6N2E2_126 - FIG00960892: hypothetical protein, at 174,048 to 175,745
_126
Pf6N2E2_127 - AttE component of AttEFGH ABC transport system, at 176,445 to 177,113
_127
Pf6N2E2_128 - AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system, at 177,113 to 179,581
_128
Position (kb) 176
177
178 Strain fitness (log2 ratio) -2
-1
0
1
2 at 175.527 kb on + strand, within Pf6N2E2_126 at 175.527 kb on + strand, within Pf6N2E2_126 at 175.527 kb on + strand, within Pf6N2E2_126 at 175.528 kb on - strand, within Pf6N2E2_126 at 175.528 kb on - strand, within Pf6N2E2_126 at 175.528 kb on - strand, within Pf6N2E2_126 at 175.528 kb on - strand, within Pf6N2E2_126 at 175.591 kb on - strand at 175.638 kb on + strand at 175.821 kb on + strand at 175.821 kb on + strand at 175.822 kb on - strand at 175.822 kb on - strand at 175.822 kb on - strand at 175.822 kb on - strand at 175.822 kb on - strand at 175.822 kb on - strand at 175.822 kb on - strand at 175.822 kb on - strand at 176.036 kb on + strand at 176.036 kb on + strand at 176.037 kb on - strand at 176.037 kb on - strand at 176.046 kb on + strand at 176.046 kb on + strand at 176.046 kb on + strand at 176.046 kb on + strand at 176.046 kb on + strand at 176.047 kb on - strand at 176.047 kb on - strand at 176.051 kb on + strand at 176.051 kb on + strand at 176.336 kb on + strand at 176.336 kb on + strand at 176.336 kb on + strand at 176.337 kb on - strand at 176.337 kb on - strand at 176.337 kb on - strand at 176.337 kb on - strand at 176.359 kb on - strand at 176.359 kb on - strand at 176.359 kb on - strand at 176.359 kb on - strand at 176.376 kb on + strand at 176.377 kb on - strand at 176.377 kb on - strand at 176.812 kb on + strand, within Pf6N2E2_127 at 176.986 kb on + strand, within Pf6N2E2_127 at 177.074 kb on - strand at 177.074 kb on - strand at 177.257 kb on + strand at 177.258 kb on - strand at 177.258 kb on - strand at 177.518 kb on - strand, within Pf6N2E2_128 at 177.684 kb on + strand, within Pf6N2E2_128
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.12 mg/ml remove 175,527 + Pf6N2E2_126 0.87 +0.3 175,527 + Pf6N2E2_126 0.87 +2.5 175,527 + Pf6N2E2_126 0.87 +0.9 175,528 - Pf6N2E2_126 0.87 +0.5 175,528 - Pf6N2E2_126 0.87 +0.6 175,528 - Pf6N2E2_126 0.87 -0.1 175,528 - Pf6N2E2_126 0.87 -2.2 175,591 - -0.3 175,638 + -0.6 175,821 + +0.5 175,821 + -1.5 175,822 - -0.7 175,822 - -0.7 175,822 - +0.4 175,822 - +1.0 175,822 - +0.0 175,822 - -0.0 175,822 - +0.2 175,822 - -0.2 176,036 + +0.5 176,036 + +0.6 176,037 - -0.2 176,037 - +2.6 176,046 + +1.2 176,046 + -0.2 176,046 + +0.3 176,046 + +0.2 176,046 + +0.0 176,047 - -1.2 176,047 - +0.3 176,051 + -0.2 176,051 + -0.2 176,336 + +0.0 176,336 + -0.9 176,336 + -0.7 176,337 - +0.7 176,337 - +0.7 176,337 - +0.7 176,337 - -0.6 176,359 - +0.4 176,359 - -1.0 176,359 - +0.7 176,359 - -0.9 176,376 + -0.3 176,377 - -0.3 176,377 - +1.2 176,812 + Pf6N2E2_127 0.55 -1.5 176,986 + Pf6N2E2_127 0.81 +0.1 177,074 - -0.0 177,074 - +0.0 177,257 + -0.3 177,258 - -0.3 177,258 - -0.9 177,518 - Pf6N2E2_128 0.16 +1.4 177,684 + Pf6N2E2_128 0.23 -0.6
Or see this region's nucleotide sequence