Strain Fitness in Pseudomonas fluorescens SBW25-INTG around PFLU_RS21235

Experiment: Temperature shift 10_to_21; with MOPS

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Temperature shift 10_to_21; with MOPS
4,775,960	+		PFLU_RS21225	0.45	-1.4
4,775,960	+		PFLU_RS21225	0.45	-0.8
4,775,960	+		PFLU_RS21225	0.45	-0.3
4,775,960	+		PFLU_RS21225	0.45	+1.2
4,775,960	+		PFLU_RS21225	0.45	-0.2
4,775,960	+		PFLU_RS21225	0.45	+0.9
4,775,960	+		PFLU_RS21225	0.45	+1.2
4,775,961	-		PFLU_RS21225	0.45	-0.1
4,775,961	-		PFLU_RS21225	0.45	-1.0
4,775,961	-		PFLU_RS21225	0.45	+1.8
4,775,961	-		PFLU_RS21225	0.45	+1.4
4,775,961	-		PFLU_RS21225	0.45	-0.2
4,775,961	-		PFLU_RS21225	0.45	+0.6
4,776,015	+		PFLU_RS21225	0.52	-2.5
4,776,015	+		PFLU_RS21225	0.52	+1.4
4,776,184	+		PFLU_RS21225	0.72	-1.9
4,776,222	-		PFLU_RS21225	0.77	-0.2
4,776,222	-		PFLU_RS21225	0.77	-1.6
4,776,409	-				-0.9
4,776,452	-				+0.3
4,776,452	-				+0.3
4,776,533	+				+1.6
4,776,534	-				+2.6
4,776,536	-				-0.7
4,776,536	-				+0.4
4,776,536	-				-1.1
4,776,540	+				-0.6
4,776,541	-				+0.6
4,776,541	-				+0.9
4,776,541	-				+1.0
4,776,560	+				+1.3
4,776,595	+				-1.5
4,776,596	-				-0.4
4,776,663	-				-0.6
4,776,691	-				-0.8
4,776,696	+				+1.1
4,776,697	-				-0.1
4,776,700	+				-0.6
4,776,759	+		PFLU_RS31025	0.13	+1.3
4,776,759	+		PFLU_RS31025	0.13	-1.7
4,776,759	+		PFLU_RS31025	0.13	-0.4
4,776,759	+		PFLU_RS31025	0.13	-1.0
4,776,759	+		PFLU_RS31025	0.13	+0.4
4,776,759	+		PFLU_RS31025	0.13	-1.2
4,776,760	-		PFLU_RS31025	0.14	-0.3
4,776,760	-		PFLU_RS31025	0.14	-1.6
4,776,760	-		PFLU_RS31025	0.14	-0.9
4,776,820	+		PFLU_RS31025	0.53	-0.4
4,776,849	-		PFLU_RS31025	0.72	+0.9
4,776,849	-		PFLU_RS31025	0.72	-0.8
4,776,849	-		PFLU_RS31025	0.72	+1.3
4,776,887	+				-0.7
4,776,887	+				+0.4
4,776,890	-				+1.4
4,776,890	-				-1.1
4,776,890	-				+0.9
4,776,918	+				-1.9
4,776,918	+				-0.1
4,776,919	-				-1.0
4,776,934	-				+0.6
4,776,947	+				-0.3
4,776,948	-				+0.3
4,777,094	+				+0.6
4,777,095	-				-1.2
4,777,135	+				-0.1
4,777,135	+				+0.9
4,777,135	+				-0.2
4,777,136	-				-0.1
4,777,311	+		PFLU_RS21235	0.17	-1.6
4,777,311	+		PFLU_RS21235	0.17	-1.7
4,777,311	+		PFLU_RS21235	0.17	+1.1
4,777,457	+		PFLU_RS21235	0.24	-0.9
4,777,457	+		PFLU_RS21235	0.24	-1.7
4,777,457	+		PFLU_RS21235	0.24	-1.4
4,777,458	-		PFLU_RS21235	0.25	-0.6
4,777,458	-		PFLU_RS21235	0.25	+1.6
4,777,587	-		PFLU_RS21235	0.31	-0.7
4,777,587	-		PFLU_RS21235	0.31	-0.4
4,777,622	+		PFLU_RS21235	0.32	-0.0
4,777,623	-		PFLU_RS21235	0.32	-2.3
4,777,623	-		PFLU_RS21235	0.32	-0.6
4,777,623	-		PFLU_RS21235	0.32	-0.6
4,777,623	-		PFLU_RS21235	0.32	-0.7
4,777,623	-		PFLU_RS21235	0.32	+0.3
4,777,623	-		PFLU_RS21235	0.32	-1.7
4,777,808	+		PFLU_RS21235	0.41	-1.3
4,777,808	+		PFLU_RS21235	0.41	+0.7
4,777,808	+		PFLU_RS21235	0.41	-1.2
4,777,809	-		PFLU_RS21235	0.41	-2.9
4,777,809	-		PFLU_RS21235	0.41	-1.7
4,777,809	-		PFLU_RS21235	0.41	+0.2
4,777,809	-		PFLU_RS21235	0.41	+0.5
4,777,809	-		PFLU_RS21235	0.41	-1.0
4,777,814	+		PFLU_RS21235	0.42	+0.3
4,777,814	+		PFLU_RS21235	0.42	+1.8
4,777,814	+		PFLU_RS21235	0.42	-0.8
4,777,814	+		PFLU_RS21235	0.42	-1.3
4,777,814	+		PFLU_RS21235	0.42	+0.3
4,777,814	+		PFLU_RS21235	0.42	-0.1
4,777,814	+		PFLU_RS21235	0.42	+0.4
4,777,814	+		PFLU_RS21235	0.42	-0.9
4,777,814	+		PFLU_RS21235	0.42	+0.4
4,777,814	+		PFLU_RS21235	0.42	-1.2
4,777,814	+		PFLU_RS21235	0.42	-0.2
4,777,814	+		PFLU_RS21235	0.42	-0.0
4,777,814	+		PFLU_RS21235	0.42	+0.1
4,777,814	+		PFLU_RS21235	0.42	+0.9
4,777,814	+		PFLU_RS21235	0.42	-1.1
4,777,814	+		PFLU_RS21235	0.42	+0.9
4,777,814	+		PFLU_RS21235	0.42	-1.6
4,777,814	+		PFLU_RS21235	0.42	-1.1
4,777,814	+		PFLU_RS21235	0.42	-0.7
4,777,814	+		PFLU_RS21235	0.42	-1.1
4,777,814	+		PFLU_RS21235	0.42	-0.4
4,777,814	+		PFLU_RS21235	0.42	-0.8
4,777,814	+		PFLU_RS21235	0.42	-2.3
4,777,814	+		PFLU_RS21235	0.42	-1.5
4,777,814	+		PFLU_RS21235	0.42	-0.9
4,777,814	+		PFLU_RS21235	0.42	+0.1
4,777,814	+		PFLU_RS21235	0.42	-2.0
4,777,814	+		PFLU_RS21235	0.42	-0.0
4,777,814	+		PFLU_RS21235	0.42	-0.9
4,777,814	+		PFLU_RS21235	0.42	-0.1
4,777,814	+		PFLU_RS21235	0.42	-0.6
4,777,814	+		PFLU_RS21235	0.42	-0.2
4,777,814	+		PFLU_RS21235	0.42	-0.1
4,777,814	+		PFLU_RS21235	0.42	+1.9
4,777,814	+		PFLU_RS21235	0.42	-0.1
4,777,814	+		PFLU_RS21235	0.42	+1.4
4,777,814	+		PFLU_RS21235	0.42	-1.5
4,777,815	-		PFLU_RS21235	0.42	+0.5
4,777,815	-		PFLU_RS21235	0.42	-0.1
4,777,815	-		PFLU_RS21235	0.42	+0.0
4,777,815	-		PFLU_RS21235	0.42	-0.3
4,777,815	-		PFLU_RS21235	0.42	+1.4
4,777,815	-		PFLU_RS21235	0.42	+0.9
4,777,815	-		PFLU_RS21235	0.42	-0.7
4,777,815	-		PFLU_RS21235	0.42	+0.3
4,777,815	-		PFLU_RS21235	0.42	-1.1
4,777,815	-		PFLU_RS21235	0.42	-0.2
4,777,815	-		PFLU_RS21235	0.42	-0.9
4,777,815	-		PFLU_RS21235	0.42	+0.1
4,777,815	-		PFLU_RS21235	0.42	+0.4
4,777,815	-		PFLU_RS21235	0.42	+0.3
4,777,815	-		PFLU_RS21235	0.42	-1.0
4,777,815	-		PFLU_RS21235	0.42	-0.4
4,777,815	-		PFLU_RS21235	0.42	-1.9
4,777,815	-		PFLU_RS21235	0.42	+0.0
4,777,815	-		PFLU_RS21235	0.42	+0.4
4,777,815	-		PFLU_RS21235	0.42	-0.4
4,777,815	-		PFLU_RS21235	0.42	-0.8
4,777,815	-		PFLU_RS21235	0.42	+0.2
4,777,815	-		PFLU_RS21235	0.42	-1.6
4,777,815	-		PFLU_RS21235	0.42	-1.1
4,777,815	-		PFLU_RS21235	0.42	-0.7
4,777,815	-		PFLU_RS21235	0.42	-0.5
4,777,815	-		PFLU_RS21235	0.42	-0.2
4,777,815	-		PFLU_RS21235	0.42	-1.1
4,777,815	-		PFLU_RS21235	0.42	+0.3
4,777,896	-		PFLU_RS21235	0.45	+0.3
4,777,941	+		PFLU_RS21235	0.48	-0.1
4,777,941	+		PFLU_RS21235	0.48	+0.1
4,777,941	+		PFLU_RS21235	0.48	+0.4
4,777,941	+		PFLU_RS21235	0.48	+0.4
4,777,941	+		PFLU_RS21235	0.48	-0.2
4,777,941	+		PFLU_RS21235	0.48	-0.6
4,777,941	+		PFLU_RS21235	0.48	+0.0
4,777,941	+		PFLU_RS21235	0.48	-1.7
4,777,941	+		PFLU_RS21235	0.48	+0.4
4,777,941	+		PFLU_RS21235	0.48	-0.7
4,777,941	+		PFLU_RS21235	0.48	+0.0
4,777,941	+		PFLU_RS21235	0.48	+0.0
4,777,941	+		PFLU_RS21235	0.48	-0.7
4,777,942	-		PFLU_RS21235	0.48	+2.2
4,777,942	-		PFLU_RS21235	0.48	+2.2
4,777,942	-		PFLU_RS21235	0.48	+1.0
4,777,942	-		PFLU_RS21235	0.48	-0.2
4,777,942	-		PFLU_RS21235	0.48	-1.9
4,777,942	-		PFLU_RS21235	0.48	-0.4
4,777,942	-		PFLU_RS21235	0.48	+0.1
4,777,942	-		PFLU_RS21235	0.48	-0.7
4,777,942	-		PFLU_RS21235	0.48	-0.9
4,777,942	-		PFLU_RS21235	0.48	-1.8
4,777,942	-		PFLU_RS21235	0.48	+1.4
4,777,942	-		PFLU_RS21235	0.48	-1.0
4,777,942	-		PFLU_RS21235	0.48	+0.0
4,777,942	-		PFLU_RS21235	0.48	+0.2
4,777,942	-		PFLU_RS21235	0.48	+0.9
4,777,942	-		PFLU_RS21235	0.48	-1.3
4,777,942	-		PFLU_RS21235	0.48	-1.6
4,777,942	-		PFLU_RS21235	0.48	-0.4
4,777,942	-		PFLU_RS21235	0.48	-0.6
4,777,942	-		PFLU_RS21235	0.48	+0.4
4,777,942	-		PFLU_RS21235	0.48	-0.9
4,778,015	+		PFLU_RS21235	0.51	-0.8
4,778,015	+		PFLU_RS21235	0.51	+0.0
4,778,015	+		PFLU_RS21235	0.51	-1.9
4,778,015	+		PFLU_RS21235	0.51	-0.3
4,778,015	+		PFLU_RS21235	0.51	+0.7
4,778,245	-		PFLU_RS21235	0.62	-1.9
4,778,339	+		PFLU_RS21235	0.67	+0.4
4,778,339	+		PFLU_RS21235	0.67	-0.1
4,778,339	+		PFLU_RS21235	0.67	-1.0
4,778,339	+		PFLU_RS21235	0.67	-3.1
4,778,339	+		PFLU_RS21235	0.67	+0.1
4,778,340	-		PFLU_RS21235	0.67	-1.1
4,778,340	-		PFLU_RS21235	0.67	-1.0
4,778,340	-		PFLU_RS21235	0.67	+1.8
4,778,340	-		PFLU_RS21235	0.67	+0.1
4,778,340	-		PFLU_RS21235	0.67	+0.1
4,778,340	-		PFLU_RS21235	0.67	-0.6
4,778,439	-		PFLU_RS21235	0.72	-0.5
4,778,565	-		PFLU_RS21235	0.78	-1.6
4,778,585	+		PFLU_RS21235	0.78	-0.7
4,778,586	-		PFLU_RS21235	0.79	-1.1
4,778,627	+		PFLU_RS21235	0.81	+0.4
4,778,669	+		PFLU_RS21235	0.83	-1.5
4,778,670	-		PFLU_RS21235	0.83	-0.2
4,778,670	-		PFLU_RS21235	0.83	-0.1
4,778,762	-		PFLU_RS21235	0.87	-0.6
4,778,798	+		PFLU_RS21235	0.89	-0.6
4,778,798	+		PFLU_RS21235	0.89	+0.5
4,778,798	+		PFLU_RS21235	0.89	-0.3
4,778,799	-		PFLU_RS21235	0.89	-0.1
4,778,799	-		PFLU_RS21235	0.89	+0.0
4,778,799	-		PFLU_RS21235	0.89	+0.0
4,778,799	-		PFLU_RS21235	0.89	-0.3
4,778,799	-		PFLU_RS21235	0.89	-0.4
4,778,799	-		PFLU_RS21235	0.89	-0.6
4,778,799	-		PFLU_RS21235	0.89	-0.4
4,778,888	+				+0.7
4,778,888	+				-0.1
4,778,888	+				+0.8
4,778,888	+				-0.1
4,778,889	-				-1.4
4,778,889	-				-0.5
4,778,889	-				+0.4
4,778,954	+				+0.1
4,778,954	+				-2.4
4,778,955	-				+0.2
4,778,955	-				-0.3
4,778,994	+				-1.1
4,778,994	+				+0.3
4,778,994	+				-1.6
4,778,994	+				-1.6
4,778,994	+				+1.1
4,778,994	+				-1.4
4,778,994	+				+0.2
4,778,995	-				-1.4
4,778,995	-				+1.0
4,778,995	-				-0.7
4,778,995	-				+1.0
4,779,059	+				+0.2
4,779,059	+				+0.0
4,779,059	+				-0.7
4,779,059	+				-0.2
4,779,059	+				-0.4
4,779,059	+				-0.1
4,779,059	+				+0.4
4,779,059	+				+0.6
4,779,060	-				-0.5
4,779,060	-				-0.1
4,779,060	-				+0.9
4,779,060	-				-1.7
4,779,060	-				+0.1
4,779,060	-				-0.3
4,779,114	+				-0.9
4,779,115	-				-0.4
4,779,115	-				+0.1
4,779,117	+				-0.7
4,779,117	+				+2.2
4,779,117	+				-0.1
4,779,117	+				-1.1
4,779,117	+				-2.9
4,779,117	+				-0.9
4,779,117	+				-2.1
4,779,117	+				+0.1
4,779,117	+				-0.1
4,779,118	-				-0.6
4,779,118	-				+1.3
4,779,118	-				-0.6
4,779,118	-				-0.3
4,779,118	-				-0.4
4,779,118	-				+2.7
4,779,118	-				+0.7
4,779,118	-				-1.1
4,779,122	-				+0.8
4,779,122	-				-0.2
4,779,149	+				+0.4
4,779,206	+				+0.1
4,779,206	+				-0.6
4,779,206	+				+0.7
4,779,206	+				-0.9
4,779,206	+				+0.9
4,779,206	+				-0.5
4,779,206	+				-2.3
4,779,207	-				-1.1
4,779,207	-				+0.4
4,779,207	-				+0.2
4,779,234	-				-2.6
4,779,242	-				-1.7
4,779,271	+				-1.0
4,779,271	+				+0.9
4,779,271	+				-2.0
4,779,272	-				-0.7
4,779,272	-				-0.6
4,779,272	-				+2.4
4,779,272	-				+1.4
4,779,276	+				-0.3
4,779,276	+				-0.4
4,779,276	+				+2.1
4,779,276	+				-2.4
4,779,276	+				+0.6
4,779,379	+				-0.7
4,779,379	+				+1.0
4,779,379	+				-0.2
4,779,379	+				+0.5
4,779,380	-				-0.8
4,779,380	-				+1.2
4,779,380	-				+0.1
4,779,380	-				-0.7
4,779,380	-				+2.0
4,779,380	-				-0.6
4,779,380	-				-0.9
4,779,399	+				-1.6
4,779,400	-				-1.0
4,779,400	-				-1.1
4,779,400	-				+0.7
4,779,400	-				-0.4
4,779,400	-				+0.9
4,779,519	-		PFLU_RS21240	0.63	+0.7
4,779,519	-		PFLU_RS21240	0.63	+0.2
4,779,519	-		PFLU_RS21240	0.63	+0.1
4,779,575	-				-1.6
4,779,575	-				-0.9
4,779,575	-				+0.3
4,779,601	+				-0.4
4,779,602	-				-0.1
4,779,602	-				+0.2
4,779,622	+				-1.6
4,779,622	+				-0.1
4,779,622	+				-0.2
4,779,622	+				-0.4
4,779,623	-				-1.1
4,779,623	-				+1.0
4,779,623	-				+0.2
4,779,755	+		PFLU_RS21245	0.18	-0.8
4,779,756	-		PFLU_RS21245	0.18	+0.3
4,779,812	+		PFLU_RS21245	0.29	+0.6
4,779,812	+		PFLU_RS21245	0.29	-0.6
4,779,812	+		PFLU_RS21245	0.29	+0.3
4,779,813	-		PFLU_RS21245	0.29	+0.1
4,779,813	-		PFLU_RS21245	0.29	-0.5
4,779,813	-		PFLU_RS21245	0.29	-0.7
4,779,962	+		PFLU_RS21245	0.57	-0.1
4,779,962	+		PFLU_RS21245	0.57	-0.1
4,779,962	+		PFLU_RS21245	0.57	-1.3
4,779,962	+		PFLU_RS21245	0.57	+0.2
4,779,962	+		PFLU_RS21245	0.57	-0.4
4,779,962	+		PFLU_RS21245	0.57	-0.2
4,779,963	-		PFLU_RS21245	0.57	-0.3
4,779,963	-		PFLU_RS21245	0.57	+1.0
4,779,963	-		PFLU_RS21245	0.57	-1.7
4,779,963	-		PFLU_RS21245	0.57	+1.4