Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14745

Experiment: R2A with nitrite 25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 25 mM
3,263,472	+		LRK54_RS14735	0.86	+0.6
3,263,472	+		LRK54_RS14735	0.86	-0.2
3,263,472	+		LRK54_RS14735	0.86	+1.8
3,263,472	+		LRK54_RS14735	0.86	+1.5
3,263,473	-		LRK54_RS14735	0.86	-0.3
3,263,473	-		LRK54_RS14735	0.86	-0.1
3,263,473	-		LRK54_RS14735	0.86	-0.2
3,263,473	-		LRK54_RS14735	0.86	-0.5
3,263,473	-		LRK54_RS14735	0.86	-1.0
3,263,473	-		LRK54_RS14735	0.86	-0.4
3,263,473	-		LRK54_RS14735	0.86	-0.8
3,263,473	-		LRK54_RS14735	0.86	-0.4
3,263,473	-		LRK54_RS14735	0.86	-0.0
3,263,473	-		LRK54_RS14735	0.86	-0.7
3,263,474	+		LRK54_RS14735	0.86	+1.2
3,263,474	+		LRK54_RS14735	0.86	+0.6
3,263,474	+		LRK54_RS14735	0.86	-1.4
3,263,474	+		LRK54_RS14735	0.86	+0.2
3,263,474	+		LRK54_RS14735	0.86	-1.2
3,263,474	+		LRK54_RS14735	0.86	-0.2
3,263,474	+		LRK54_RS14735	0.86	-2.4
3,263,474	+		LRK54_RS14735	0.86	+0.4
3,263,474	+		LRK54_RS14735	0.86	-0.6
3,263,475	-		LRK54_RS14735	0.86	+2.6
3,263,475	-		LRK54_RS14735	0.86	+0.9
3,263,475	-		LRK54_RS14735	0.86	-0.4
3,263,475	-		LRK54_RS14735	0.86	+1.6
3,263,475	-		LRK54_RS14735	0.86	-1.0
3,263,475	-		LRK54_RS14735	0.86	+1.0
3,263,475	-		LRK54_RS14735	0.86	-0.1
3,263,584	+				-0.0
3,263,649	+				+0.2
3,263,649	+				+0.0
3,263,649	+				-0.9
3,263,649	+				-0.2
3,263,649	+				-1.5
3,263,650	-				-0.7
3,263,650	-				+0.6
3,263,650	-				+0.7
3,263,650	-				-0.4
3,263,650	-				-0.5
3,263,677	+				-0.2
3,263,677	+				-0.7
3,263,677	+				+0.6
3,263,677	+				-1.2
3,263,677	+				+1.2
3,263,677	+				+0.4
3,263,677	+				-0.9
3,263,677	+				+0.2
3,263,677	+				-1.0
3,263,678	-				-1.5
3,263,678	-				-0.9
3,263,678	-				-0.6
3,263,678	-				-2.6
3,263,678	-				+1.1
3,263,678	-				-0.1
3,263,678	-				+3.0
3,263,678	-				-0.9
3,263,678	-				-1.3
3,263,678	-				+1.4
3,263,678	-				+0.2
3,263,678	-				-0.9
3,263,728	-				-0.9
3,263,728	-				-2.1
3,263,728	-				-1.3
3,263,838	+		LRK54_RS14740	0.25	-1.0
3,263,838	+		LRK54_RS14740	0.25	-1.4
3,263,970	+		LRK54_RS14740	0.52	+0.3
3,263,970	+		LRK54_RS14740	0.52	-0.3
3,263,970	+		LRK54_RS14740	0.52	-2.4
3,263,971	-		LRK54_RS14740	0.53	+0.6
3,263,971	-		LRK54_RS14740	0.53	-1.3
3,263,971	-		LRK54_RS14740	0.53	-0.3
3,263,971	-		LRK54_RS14740	0.53	-1.4
3,264,033	+		LRK54_RS14740	0.65	-0.0
3,264,033	+		LRK54_RS14740	0.65	+1.0
3,264,033	+		LRK54_RS14740	0.65	-1.7
3,264,033	+		LRK54_RS14740	0.65	-2.1
3,264,033	+		LRK54_RS14740	0.65	-0.5
3,264,033	+		LRK54_RS14740	0.65	+1.9
3,264,033	+		LRK54_RS14740	0.65	+1.4
3,264,033	+		LRK54_RS14740	0.65	-0.0
3,264,033	+		LRK54_RS14740	0.65	-0.5
3,264,034	-		LRK54_RS14740	0.66	+0.1
3,264,034	-		LRK54_RS14740	0.66	-1.4
3,264,034	-		LRK54_RS14740	0.66	-1.3
3,264,034	-		LRK54_RS14740	0.66	+0.2
3,264,034	-		LRK54_RS14740	0.66	+1.4
3,264,034	-		LRK54_RS14740	0.66	-2.5
3,264,034	-		LRK54_RS14740	0.66	-1.1
3,264,034	-		LRK54_RS14740	0.66	-1.4
3,264,034	-		LRK54_RS14740	0.66	-0.3
3,264,034	-		LRK54_RS14740	0.66	+0.3
3,264,034	-		LRK54_RS14740	0.66	-1.6
3,264,138	+		LRK54_RS14740	0.87	-0.3
3,264,138	+		LRK54_RS14740	0.87	-0.1
3,264,138	+		LRK54_RS14740	0.87	-2.4
3,264,138	+		LRK54_RS14740	0.87	+0.2
3,264,138	+		LRK54_RS14740	0.87	-1.3
3,264,138	+		LRK54_RS14740	0.87	+1.0
3,264,138	+		LRK54_RS14740	0.87	-1.8
3,264,138	+		LRK54_RS14740	0.87	+0.2
3,264,139	-		LRK54_RS14740	0.87	-2.7
3,264,139	-		LRK54_RS14740	0.87	-0.4
3,264,139	-		LRK54_RS14740	0.87	+0.0
3,264,139	-		LRK54_RS14740	0.87	-1.1
3,264,139	-		LRK54_RS14740	0.87	+0.7
3,264,139	-		LRK54_RS14740	0.87	-0.1
3,264,139	-		LRK54_RS14740	0.87	-1.8
3,264,177	-				-1.7
3,264,334	+				-0.1
3,264,334	+				-2.1
3,264,334	+				-1.3
3,264,334	+				+0.4
3,264,334	+				-1.3
3,264,334	+				-0.2
3,264,334	+				-0.1
3,264,334	+				-1.5
3,264,334	+				+0.4
3,264,334	+				+0.1
3,264,335	-				+0.6
3,264,335	-				-1.1
3,264,335	-				+0.1
3,264,386	+				-2.6
3,264,386	+				-0.4
3,264,386	+				-1.5
3,264,386	+				+0.1
3,264,386	+				-0.2
3,264,386	+				+1.0
3,264,386	+				-1.2
3,264,386	+				-2.1
3,264,386	+				+0.1
3,264,386	+				-0.3
3,264,387	-				+0.9
3,264,387	-				-2.0
3,264,387	-				-1.6
3,264,387	-				-0.8
3,264,387	-				+0.2
3,264,387	-				-1.8
3,264,387	-				-0.2
3,264,387	-				-0.6
3,264,449	+		LRK54_RS14745	0.20	-1.5
3,264,449	+		LRK54_RS14745	0.20	-0.7
3,264,449	+		LRK54_RS14745	0.20	-0.9
3,264,449	+		LRK54_RS14745	0.20	-0.4
3,264,449	+		LRK54_RS14745	0.20	-1.7
3,264,449	+		LRK54_RS14745	0.20	+0.3
3,264,449	+		LRK54_RS14745	0.20	+0.1
3,264,449	+		LRK54_RS14745	0.20	-0.1
3,264,449	+		LRK54_RS14745	0.20	-1.7
3,264,449	+		LRK54_RS14745	0.20	-0.4
3,264,450	-		LRK54_RS14745	0.21	+0.6
3,264,450	-		LRK54_RS14745	0.21	-0.6
3,264,450	-		LRK54_RS14745	0.21	-0.3
3,264,450	-		LRK54_RS14745	0.21	-0.5
3,264,450	-		LRK54_RS14745	0.21	-2.3
3,264,450	-		LRK54_RS14745	0.21	+1.6
3,264,450	-		LRK54_RS14745	0.21	+0.4
3,264,450	-		LRK54_RS14745	0.21	+0.2
3,264,450	-		LRK54_RS14745	0.21	+0.3
3,264,450	-		LRK54_RS14745	0.21	-1.3
3,264,450	-		LRK54_RS14745	0.21	+0.4
3,264,450	-		LRK54_RS14745	0.21	+0.2
3,264,450	-		LRK54_RS14745	0.21	+0.1
3,264,450	-		LRK54_RS14745	0.21	-0.1
3,264,450	-		LRK54_RS14745	0.21	-0.0
3,264,452	-		LRK54_RS14745	0.21	-1.5
3,264,551	+		LRK54_RS14745	0.42	+0.5
3,264,551	+		LRK54_RS14745	0.42	+0.0
3,264,919	+				+0.4
3,264,919	+				+0.3
3,264,919	+				+0.3
3,264,919	+				-0.4
3,264,919	+				+0.5
3,264,919	+				+0.1
3,264,919	+				-0.1
3,264,919	+				-1.3
3,264,919	+				-0.3
3,264,919	+				-1.6
3,264,919	+				+0.5
3,264,919	+				+0.4
3,264,919	+				-1.4
3,264,919	+				+0.5
3,264,919	+				+0.3
3,264,919	+				+0.9
3,264,919	+				+1.0
3,264,920	-				-2.4
3,264,920	-				-0.3
3,264,920	-				+0.0
3,264,920	-				+2.1
3,264,920	-				-2.4
3,264,920	-				-0.4
3,264,920	-				-0.6
3,264,920	-				-1.6
3,264,920	-				-0.6
3,264,920	-				-0.2
3,264,920	-				+0.2
3,264,922	+				-0.6
3,264,922	+				-1.3
3,264,922	+				-1.5
3,264,922	+				+0.4
3,264,922	+				+0.1
3,264,922	+				+0.6
3,264,922	+				-0.1
3,264,922	+				-0.0
3,264,922	+				-0.3
3,264,922	+				+0.4
3,264,922	+				-1.8
3,264,922	+				+0.6
3,264,922	+				-0.4
3,264,923	-				+0.4
3,264,923	-				-1.8
3,264,923	-				-0.8
3,264,923	-				-0.1
3,264,923	-				-2.4
3,264,923	-				-0.7
3,264,923	-				+0.4
3,264,923	-				+0.4
3,264,923	-				-0.3
3,264,923	-				-0.3
3,264,923	-				+0.6
3,264,923	-				-1.3
3,264,923	-				-0.4
3,264,923	-				-0.7
3,264,923	-				-0.6
3,264,923	-				-0.1
3,264,955	+				-3.1
3,264,955	+				-0.8
3,264,955	+				+0.1
3,264,955	+				+0.4
3,264,955	+				-0.2
3,264,955	+				+0.6
3,264,955	+				+0.8
3,264,955	+				+1.6
3,264,955	+				+0.3
3,264,955	+				+2.1
3,264,955	+				+0.8
3,264,955	+				-0.4
3,264,955	+				+0.6
3,264,955	+				-0.1
3,264,955	+				-1.5
3,264,956	-				-1.9
3,264,956	-				+0.2
3,264,956	-				-2.9
3,264,956	-				+0.3
3,264,956	-				+0.1
3,264,956	-				+1.6
3,264,956	-				+0.7
3,264,956	-				+0.4
3,264,973	+				-1.3
3,264,973	+				-1.1
3,264,973	+				+0.6
3,264,973	+				+1.0
3,264,973	+				-0.6
3,264,973	+				+1.6
3,264,973	+				-0.7
3,264,973	+				+0.7
3,264,973	+				+0.6
3,264,973	+				-1.3
3,264,974	-				+0.7
3,264,974	-				-1.7
3,264,974	-				+0.4
3,264,974	-				-1.2
3,265,015	+				-1.2
3,265,015	+				+0.2
3,265,015	+				+0.7
3,265,015	+				-0.7
3,265,016	-				-0.5
3,265,016	-				+0.7
3,265,016	-				-0.9
3,265,016	-				-1.3
3,265,016	-				+0.1
3,265,016	-				+0.2
3,265,016	-				+0.3
3,265,016	-				-1.5
3,265,016	-				+0.5
3,265,016	-				-0.5
3,265,165	+		LRK54_RS14750	0.22	+0.8
3,265,165	+		LRK54_RS14750	0.22	-0.9
3,265,165	+		LRK54_RS14750	0.22	+0.1
3,265,165	+		LRK54_RS14750	0.22	-0.1
3,265,165	+		LRK54_RS14750	0.22	+0.2
3,265,165	+		LRK54_RS14750	0.22	+1.6
3,265,165	+		LRK54_RS14750	0.22	+0.3
3,265,165	+		LRK54_RS14750	0.22	-0.2
3,265,165	+		LRK54_RS14750	0.22	-2.0
3,265,165	+		LRK54_RS14750	0.22	-0.3
3,265,165	+		LRK54_RS14750	0.22	-0.9
3,265,165	+		LRK54_RS14750	0.22	+0.2
3,265,165	+		LRK54_RS14750	0.22	-0.4
3,265,165	+		LRK54_RS14750	0.22	+0.2
3,265,165	+		LRK54_RS14750	0.22	-0.5
3,265,165	+		LRK54_RS14750	0.22	+0.8
3,265,165	+		LRK54_RS14750	0.22	+0.5
3,265,165	+		LRK54_RS14750	0.22	+1.8
3,265,165	+		LRK54_RS14750	0.22	-0.2
3,265,165	+		LRK54_RS14750	0.22	+0.1
3,265,165	+		LRK54_RS14750	0.22	+0.5
3,265,165	+		LRK54_RS14750	0.22	+0.9
3,265,165	+		LRK54_RS14750	0.22	+0.2
3,265,165	+		LRK54_RS14750	0.22	-0.1
3,265,165	+		LRK54_RS14750	0.22	-0.2
3,265,165	+		LRK54_RS14750	0.22	-0.8
3,265,165	+		LRK54_RS14750	0.22	-2.8
3,265,166	-		LRK54_RS14750	0.23	-0.9
3,265,166	-		LRK54_RS14750	0.23	+0.2
3,265,166	-		LRK54_RS14750	0.23	-1.6
3,265,166	-		LRK54_RS14750	0.23	-2.6
3,265,166	-		LRK54_RS14750	0.23	+1.0
3,265,166	-		LRK54_RS14750	0.23	-0.8
3,265,166	-		LRK54_RS14750	0.23	-0.2
3,265,166	-		LRK54_RS14750	0.23	-0.0
3,265,166	-		LRK54_RS14750	0.23	+0.4
3,265,166	-		LRK54_RS14750	0.23	-0.1
3,265,166	-		LRK54_RS14750	0.23	-0.6
3,265,166	-		LRK54_RS14750	0.23	-0.6
3,265,166	-		LRK54_RS14750	0.23	+0.0
3,265,166	-		LRK54_RS14750	0.23	-0.8
3,265,166	-		LRK54_RS14750	0.23	+1.0
3,265,166	-		LRK54_RS14750	0.23	-1.1
3,265,166	-		LRK54_RS14750	0.23	-0.6
3,265,166	-		LRK54_RS14750	0.23	-1.6
3,265,362	+		LRK54_RS14750	0.40	-1.0
3,265,362	+		LRK54_RS14750	0.40	-1.0
3,265,362	+		LRK54_RS14750	0.40	+0.4
3,265,362	+		LRK54_RS14750	0.40	-1.4
3,265,362	+		LRK54_RS14750	0.40	-0.0
3,265,363	-		LRK54_RS14750	0.41	-1.8
3,265,363	-		LRK54_RS14750	0.41	+0.4
3,265,363	-		LRK54_RS14750	0.41	-0.8
3,265,363	-		LRK54_RS14750	0.41	-1.8
3,265,363	-		LRK54_RS14750	0.41	-1.1
3,265,363	-		LRK54_RS14750	0.41	-1.6
3,265,363	-		LRK54_RS14750	0.41	-1.0
3,265,369	+		LRK54_RS14750	0.41	-1.3
3,265,370	-		LRK54_RS14750	0.41	+1.8
3,265,370	-		LRK54_RS14750	0.41	-1.9
3,265,405	+		LRK54_RS14750	0.44	-2.3
3,265,405	+		LRK54_RS14750	0.44	+2.6
3,265,405	+		LRK54_RS14750	0.44	+1.3
3,265,405	+		LRK54_RS14750	0.44	-0.2
3,265,405	+		LRK54_RS14750	0.44	+0.2
3,265,405	+		LRK54_RS14750	0.44	+1.0
3,265,405	+		LRK54_RS14750	0.44	-0.0
3,265,405	+		LRK54_RS14750	0.44	-0.7
3,265,405	+		LRK54_RS14750	0.44	-1.0
3,265,405	+		LRK54_RS14750	0.44	-1.9
3,265,405	+		LRK54_RS14750	0.44	+0.1
3,265,406	-		LRK54_RS14750	0.44	+0.9
3,265,406	-		LRK54_RS14750	0.44	-0.1
3,265,406	-		LRK54_RS14750	0.44	+0.1
3,265,406	-		LRK54_RS14750	0.44	-1.0
3,265,406	-		LRK54_RS14750	0.44	-0.6
3,265,406	-		LRK54_RS14750	0.44	-0.2
3,265,406	-		LRK54_RS14750	0.44	-0.5
3,265,406	-		LRK54_RS14750	0.44	-1.7
3,265,406	-		LRK54_RS14750	0.44	-0.5
3,265,406	-		LRK54_RS14750	0.44	+0.3
3,265,406	-		LRK54_RS14750	0.44	-0.9
3,265,406	-		LRK54_RS14750	0.44	+1.1
3,265,406	-		LRK54_RS14750	0.44	-2.3
3,265,406	-		LRK54_RS14750	0.44	+0.2
3,265,406	-		LRK54_RS14750	0.44	-1.2
3,265,444	+		LRK54_RS14750	0.48	-0.0
3,265,444	+		LRK54_RS14750	0.48	-1.0
3,265,444	+		LRK54_RS14750	0.48	-0.8
3,265,444	+		LRK54_RS14750	0.48	-1.0
3,265,444	+		LRK54_RS14750	0.48	-1.3
3,265,444	+		LRK54_RS14750	0.48	-0.6
3,265,445	-		LRK54_RS14750	0.48	+0.2
3,265,445	-		LRK54_RS14750	0.48	+1.6
3,265,445	-		LRK54_RS14750	0.48	+0.3
3,265,445	-		LRK54_RS14750	0.48	-0.5
3,265,445	-		LRK54_RS14750	0.48	-1.2
3,265,445	-		LRK54_RS14750	0.48	-0.6
3,265,445	-		LRK54_RS14750	0.48	-0.7
3,265,445	-		LRK54_RS14750	0.48	+1.5
3,265,445	-		LRK54_RS14750	0.48	-1.0
3,265,471	+		LRK54_RS14750	0.50	-0.4
3,265,471	+		LRK54_RS14750	0.50	-0.1
3,265,472	-		LRK54_RS14750	0.50	+2.2
3,265,472	-		LRK54_RS14750	0.50	+1.4
3,265,472	-		LRK54_RS14750	0.50	-1.4
3,265,663	+		LRK54_RS14750	0.68	-0.9
3,265,664	-		LRK54_RS14750	0.68	-0.9
3,265,664	-		LRK54_RS14750	0.68	-1.0
3,265,678	+		LRK54_RS14750	0.69	-0.3
3,265,678	+		LRK54_RS14750	0.69	-0.5
3,265,678	+		LRK54_RS14750	0.69	-1.0
3,265,678	+		LRK54_RS14750	0.69	-1.3
3,265,678	+		LRK54_RS14750	0.69	-0.2
3,265,678	+		LRK54_RS14750	0.69	-0.0
3,265,678	+		LRK54_RS14750	0.69	-1.2
3,265,678	+		LRK54_RS14750	0.69	-0.1
3,265,678	+		LRK54_RS14750	0.69	+0.2
3,265,678	+		LRK54_RS14750	0.69	+0.2
3,265,678	+		LRK54_RS14750	0.69	-0.2
3,265,678	+		LRK54_RS14750	0.69	-0.1
3,265,678	+		LRK54_RS14750	0.69	+0.9
3,265,678	+		LRK54_RS14750	0.69	-0.6
3,265,678	+		LRK54_RS14750	0.69	+0.4
3,265,678	+		LRK54_RS14750	0.69	+0.4
3,265,678	+		LRK54_RS14750	0.69	-0.3
3,265,678	+		LRK54_RS14750	0.69	-0.9
3,265,678	+		LRK54_RS14750	0.69	-0.3
3,265,678	+		LRK54_RS14750	0.69	+0.2
3,265,678	+		LRK54_RS14750	0.69	+1.1
3,265,678	+		LRK54_RS14750	0.69	+0.4
3,265,678	+		LRK54_RS14750	0.69	+0.2
3,265,678	+		LRK54_RS14750	0.69	+0.4
3,265,679	-		LRK54_RS14750	0.69	-1.8
3,265,679	-		LRK54_RS14750	0.69	-0.8
3,265,679	-		LRK54_RS14750	0.69	+0.3
3,265,679	-		LRK54_RS14750	0.69	-0.1
3,265,679	-		LRK54_RS14750	0.69	-1.1
3,265,679	-		LRK54_RS14750	0.69	+1.0
3,265,679	-		LRK54_RS14750	0.69	+0.1
3,265,679	-		LRK54_RS14750	0.69	-1.2
3,265,679	-		LRK54_RS14750	0.69	-0.6
3,265,679	-		LRK54_RS14750	0.69	-0.1
3,265,679	-		LRK54_RS14750	0.69	-0.3
3,265,679	-		LRK54_RS14750	0.69	-0.7
3,265,679	-		LRK54_RS14750	0.69	-0.4
3,265,679	-		LRK54_RS14750	0.69	+0.2
3,265,679	-		LRK54_RS14750	0.69	-2.4
3,265,679	-		LRK54_RS14750	0.69	+0.0
3,265,679	-		LRK54_RS14750	0.69	+0.5
3,265,679	-		LRK54_RS14750	0.69	-0.4
3,265,679	-		LRK54_RS14750	0.69	-0.3