Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS14300

Experiment: R2A with nitrite 25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 25 mM
3,181,324	+		LRK54_RS14295	0.33	+0.5
3,181,324	+		LRK54_RS14295	0.33	-1.5
3,181,324	+		LRK54_RS14295	0.33	-0.3
3,181,324	+		LRK54_RS14295	0.33	+0.6
3,181,324	+		LRK54_RS14295	0.33	-0.7
3,181,325	-		LRK54_RS14295	0.33	-1.3
3,181,432	+		LRK54_RS14295	0.41	-0.3
3,181,432	+		LRK54_RS14295	0.41	+0.0
3,181,433	-		LRK54_RS14295	0.41	+2.5
3,181,433	-		LRK54_RS14295	0.41	+2.0
3,181,433	-		LRK54_RS14295	0.41	+0.9
3,181,433	-		LRK54_RS14295	0.41	+1.4
3,181,450	+		LRK54_RS14295	0.43	+0.2
3,181,450	+		LRK54_RS14295	0.43	+1.5
3,181,451	-		LRK54_RS14295	0.43	-0.1
3,181,451	-		LRK54_RS14295	0.43	+1.1
3,181,451	-		LRK54_RS14295	0.43	-1.2
3,181,451	-		LRK54_RS14295	0.43	-0.6
3,181,451	-		LRK54_RS14295	0.43	+0.9
3,181,567	+		LRK54_RS14295	0.52	+0.7
3,181,567	+		LRK54_RS14295	0.52	+0.1
3,181,567	+		LRK54_RS14295	0.52	+0.8
3,181,567	+		LRK54_RS14295	0.52	+0.7
3,181,567	+		LRK54_RS14295	0.52	-1.1
3,181,567	+		LRK54_RS14295	0.52	+0.4
3,181,567	+		LRK54_RS14295	0.52	-1.6
3,181,567	+		LRK54_RS14295	0.52	+0.2
3,181,567	-		LRK54_RS14295	0.52	-0.5
3,181,568	-		LRK54_RS14295	0.52	-2.1
3,181,568	-		LRK54_RS14295	0.52	-2.0
3,181,568	-		LRK54_RS14295	0.52	-0.2
3,181,568	-		LRK54_RS14295	0.52	-0.6
3,181,568	-		LRK54_RS14295	0.52	-1.1
3,181,573	+		LRK54_RS14295	0.52	+0.3
3,181,573	+		LRK54_RS14295	0.52	+0.2
3,181,573	+		LRK54_RS14295	0.52	-0.1
3,181,573	+		LRK54_RS14295	0.52	+1.5
3,181,573	+		LRK54_RS14295	0.52	+0.6
3,181,573	+		LRK54_RS14295	0.52	+0.6
3,181,573	+		LRK54_RS14295	0.52	-0.6
3,181,573	+		LRK54_RS14295	0.52	+0.7
3,181,573	+		LRK54_RS14295	0.52	-1.1
3,181,573	+		LRK54_RS14295	0.52	+1.1
3,181,573	+		LRK54_RS14295	0.52	+0.3
3,181,573	+		LRK54_RS14295	0.52	+0.2
3,181,573	+		LRK54_RS14295	0.52	-3.1
3,181,574	-		LRK54_RS14295	0.52	-1.1
3,181,574	-		LRK54_RS14295	0.52	-0.7
3,181,574	-		LRK54_RS14295	0.52	-0.8
3,181,574	-		LRK54_RS14295	0.52	+0.5
3,181,574	-		LRK54_RS14295	0.52	+0.7
3,181,574	-		LRK54_RS14295	0.52	-0.1
3,181,574	-		LRK54_RS14295	0.52	-0.5
3,181,574	-		LRK54_RS14295	0.52	-0.7
3,181,608	-		LRK54_RS14295	0.55	-0.6
3,181,636	+		LRK54_RS14295	0.57	+0.0
3,181,636	+		LRK54_RS14295	0.57	+0.4
3,181,636	+		LRK54_RS14295	0.57	+0.5
3,181,637	-		LRK54_RS14295	0.57	+0.5
3,181,637	-		LRK54_RS14295	0.57	-1.1
3,181,642	+		LRK54_RS14295	0.58	+0.4
3,181,642	+		LRK54_RS14295	0.58	+0.3
3,181,642	+		LRK54_RS14295	0.58	-0.5
3,181,642	+		LRK54_RS14295	0.58	-0.2
3,181,642	+		LRK54_RS14295	0.58	+0.4
3,181,642	+		LRK54_RS14295	0.58	+0.3
3,181,642	+		LRK54_RS14295	0.58	+0.5
3,181,642	+		LRK54_RS14295	0.58	-0.3
3,181,642	+		LRK54_RS14295	0.58	+0.0
3,181,642	+		LRK54_RS14295	0.58	-1.7
3,181,642	+		LRK54_RS14295	0.58	-0.9
3,181,642	+		LRK54_RS14295	0.58	+0.7
3,181,642	+		LRK54_RS14295	0.58	-0.4
3,181,642	+		LRK54_RS14295	0.58	+0.7
3,181,642	+		LRK54_RS14295	0.58	-1.8
3,181,642	+		LRK54_RS14295	0.58	-0.9
3,181,643	-		LRK54_RS14295	0.58	-0.1
3,181,643	-		LRK54_RS14295	0.58	-1.0
3,181,643	-		LRK54_RS14295	0.58	-1.8
3,181,643	-		LRK54_RS14295	0.58	+0.3
3,181,643	-		LRK54_RS14295	0.58	-0.8
3,181,643	-		LRK54_RS14295	0.58	+1.3
3,181,643	-		LRK54_RS14295	0.58	-0.1
3,181,643	-		LRK54_RS14295	0.58	+0.7
3,181,643	-		LRK54_RS14295	0.58	-0.6
3,181,798	+		LRK54_RS14295	0.70	+1.3
3,181,798	+		LRK54_RS14295	0.70	-2.0
3,181,798	+		LRK54_RS14295	0.70	+1.8
3,181,798	+		LRK54_RS14295	0.70	-1.5
3,181,798	+		LRK54_RS14295	0.70	-0.9
3,181,799	-		LRK54_RS14295	0.70	-0.1
3,181,799	-		LRK54_RS14295	0.70	-1.1
3,181,799	-		LRK54_RS14295	0.70	-0.1
3,181,799	-		LRK54_RS14295	0.70	+0.1
3,181,799	-		LRK54_RS14295	0.70	+0.6
3,182,168	+				-0.2
3,182,168	+				+0.4
3,182,168	+				+0.5
3,182,168	+				-0.4
3,182,168	+				-0.0
3,182,168	+				+0.9
3,182,168	+				+0.1
3,182,168	+				+0.7
3,182,168	+				-0.3
3,182,168	+				+0.5
3,182,168	+				-0.3
3,182,168	+				-1.1
3,182,168	+				-1.2
3,182,168	+				-0.2
3,182,169	-				+2.1
3,182,169	-				-1.5
3,182,169	-				-0.9
3,182,169	-				+2.5
3,182,169	-				+0.6
3,182,169	-				+0.6
3,182,169	-				+4.3
3,182,169	-				-1.5
3,182,169	-				+1.1
3,182,294	+				+0.4
3,182,294	+				-2.1
3,182,294	+				+0.7
3,182,295	-				+0.2
3,182,295	-				+0.2
3,182,295	-				+0.5
3,182,295	-				-2.3
3,182,295	-				-0.1
3,182,295	-				-0.3
3,182,295	-				+1.3
3,182,295	-				+0.9
3,182,295	-				-0.9
3,182,297	+				-1.5
3,182,297	+				-0.0
3,182,298	-				+1.8
3,182,298	-				+0.6
3,182,375	+				+0.3
3,182,375	+				+0.1
3,182,375	+				-0.4
3,182,375	+				+0.5
3,182,376	-				+0.3
3,182,376	-				+0.4
3,182,504	+		LRK54_RS14300	0.14	+0.6
3,182,504	+		LRK54_RS14300	0.14	+0.6
3,182,504	+		LRK54_RS14300	0.14	+0.6
3,182,504	+		LRK54_RS14300	0.14	-1.8
3,182,504	+		LRK54_RS14300	0.14	-0.3
3,182,504	+		LRK54_RS14300	0.14	+0.0
3,182,504	+		LRK54_RS14300	0.14	-0.6
3,182,504	+		LRK54_RS14300	0.14	+1.2
3,182,504	+		LRK54_RS14300	0.14	+0.9
3,182,504	+		LRK54_RS14300	0.14	-1.1
3,182,504	+		LRK54_RS14300	0.14	-0.9
3,182,504	+		LRK54_RS14300	0.14	-0.8
3,182,504	+		LRK54_RS14300	0.14	-1.5
3,182,504	+		LRK54_RS14300	0.14	-0.4
3,182,505	-		LRK54_RS14300	0.14	-0.6
3,182,505	-		LRK54_RS14300	0.14	+0.0
3,182,505	-		LRK54_RS14300	0.14	+1.4
3,182,505	-		LRK54_RS14300	0.14	-0.3
3,182,505	-		LRK54_RS14300	0.14	-0.3
3,182,505	-		LRK54_RS14300	0.14	-0.4
3,182,505	-		LRK54_RS14300	0.14	-0.6
3,182,505	-		LRK54_RS14300	0.14	-1.2
3,182,505	-		LRK54_RS14300	0.14	-0.4
3,182,505	-		LRK54_RS14300	0.14	+1.1
3,182,505	-		LRK54_RS14300	0.14	-0.2
3,182,505	-		LRK54_RS14300	0.14	-0.3
3,182,505	-		LRK54_RS14300	0.14	-1.5
3,182,505	-		LRK54_RS14300	0.14	-0.4
3,182,681	+		LRK54_RS14300	0.23	-0.2
3,182,682	-		LRK54_RS14300	0.23	-1.6
3,182,844	+		LRK54_RS14300	0.31	-1.7
3,182,844	+		LRK54_RS14300	0.31	-0.0
3,182,844	+		LRK54_RS14300	0.31	-0.2
3,182,844	+		LRK54_RS14300	0.31	-0.8
3,182,844	+		LRK54_RS14300	0.31	+0.7
3,182,844	+		LRK54_RS14300	0.31	-0.1
3,182,844	+		LRK54_RS14300	0.31	-0.1
3,182,844	+		LRK54_RS14300	0.31	+1.9
3,182,844	+		LRK54_RS14300	0.31	-0.1
3,182,845	-		LRK54_RS14300	0.32	-0.2
3,182,845	-		LRK54_RS14300	0.32	-0.7
3,182,845	-		LRK54_RS14300	0.32	-1.2
3,182,845	-		LRK54_RS14300	0.32	+0.9
3,182,845	-		LRK54_RS14300	0.32	-1.0
3,182,845	-		LRK54_RS14300	0.32	+0.5
3,182,864	+		LRK54_RS14300	0.33	+0.7
3,182,864	+		LRK54_RS14300	0.33	+0.3
3,182,864	+		LRK54_RS14300	0.33	+0.1
3,182,891	+		LRK54_RS14300	0.34	-0.8
3,182,891	+		LRK54_RS14300	0.34	-1.3
3,182,891	+		LRK54_RS14300	0.34	-0.1
3,182,891	+		LRK54_RS14300	0.34	-1.1
3,182,891	+		LRK54_RS14300	0.34	-0.1
3,182,892	-		LRK54_RS14300	0.34	+1.2
3,182,892	-		LRK54_RS14300	0.34	-0.5
3,182,892	-		LRK54_RS14300	0.34	-0.3
3,182,892	-		LRK54_RS14300	0.34	+0.2
3,182,892	-		LRK54_RS14300	0.34	+1.7
3,182,892	-		LRK54_RS14300	0.34	+1.3
3,182,892	-		LRK54_RS14300	0.34	-0.3
3,182,892	-		LRK54_RS14300	0.34	-1.5
3,182,892	-		LRK54_RS14300	0.34	+0.5
3,182,892	-		LRK54_RS14300	0.34	-0.2
3,182,975	+		LRK54_RS14300	0.38	-0.7
3,182,976	-		LRK54_RS14300	0.38	+0.9
3,182,976	-		LRK54_RS14300	0.38	-0.1
3,182,976	-		LRK54_RS14300	0.38	-1.8
3,182,976	-		LRK54_RS14300	0.38	+0.3
3,182,996	+		LRK54_RS14300	0.39	-0.7
3,182,997	-		LRK54_RS14300	0.39	+1.5
3,183,143	+		LRK54_RS14300	0.47	+1.3
3,183,143	+		LRK54_RS14300	0.47	-0.1
3,183,143	+		LRK54_RS14300	0.47	-0.7
3,183,143	+		LRK54_RS14300	0.47	-0.6
3,183,143	+		LRK54_RS14300	0.47	-1.5
3,183,143	+		LRK54_RS14300	0.47	-1.0
3,183,143	+		LRK54_RS14300	0.47	-2.1
3,183,143	+		LRK54_RS14300	0.47	-0.9
3,183,143	+		LRK54_RS14300	0.47	+1.8
3,183,144	-		LRK54_RS14300	0.47	-0.5
3,183,144	-		LRK54_RS14300	0.47	-0.7
3,183,144	-		LRK54_RS14300	0.47	-0.8
3,183,144	-		LRK54_RS14300	0.47	-0.6
3,183,144	-		LRK54_RS14300	0.47	-0.7
3,183,144	-		LRK54_RS14300	0.47	+0.0
3,183,144	-		LRK54_RS14300	0.47	-2.7
3,183,144	-		LRK54_RS14300	0.47	+0.4
3,183,197	+		LRK54_RS14300	0.50	+0.5
3,183,197	+		LRK54_RS14300	0.50	+0.8
3,183,197	+		LRK54_RS14300	0.50	+0.3
3,183,197	+		LRK54_RS14300	0.50	-0.4
3,183,197	+		LRK54_RS14300	0.50	-0.8
3,183,197	+		LRK54_RS14300	0.50	+0.1
3,183,197	+		LRK54_RS14300	0.50	-1.4
3,183,197	+		LRK54_RS14300	0.50	+0.4
3,183,197	+		LRK54_RS14300	0.50	+0.2
3,183,197	+		LRK54_RS14300	0.50	+0.9
3,183,197	+		LRK54_RS14300	0.50	-0.4
3,183,197	+		LRK54_RS14300	0.50	+2.5
3,183,197	+		LRK54_RS14300	0.50	-0.9
3,183,197	+		LRK54_RS14300	0.50	+0.1
3,183,197	+		LRK54_RS14300	0.50	+0.8
3,183,197	+		LRK54_RS14300	0.50	-1.2
3,183,197	+		LRK54_RS14300	0.50	+0.7
3,183,197	+		LRK54_RS14300	0.50	-0.2
3,183,197	+		LRK54_RS14300	0.50	+0.2
3,183,197	+		LRK54_RS14300	0.50	-0.8
3,183,197	+		LRK54_RS14300	0.50	-1.6
3,183,197	+		LRK54_RS14300	0.50	+0.9
3,183,197	+		LRK54_RS14300	0.50	-0.1
3,183,197	+		LRK54_RS14300	0.50	-1.3
3,183,197	+		LRK54_RS14300	0.50	+0.7
3,183,197	+		LRK54_RS14300	0.50	+0.8
3,183,198	-		LRK54_RS14300	0.50	+0.0
3,183,198	-		LRK54_RS14300	0.50	-0.5
3,183,198	-		LRK54_RS14300	0.50	+0.4
3,183,198	-		LRK54_RS14300	0.50	+0.6
3,183,198	-		LRK54_RS14300	0.50	-0.5
3,183,198	-		LRK54_RS14300	0.50	+0.6
3,183,198	-		LRK54_RS14300	0.50	+0.2
3,183,198	-		LRK54_RS14300	0.50	+0.3
3,183,198	-		LRK54_RS14300	0.50	-0.6
3,183,198	-		LRK54_RS14300	0.50	+1.5
3,183,198	-		LRK54_RS14300	0.50	-0.3
3,183,198	-		LRK54_RS14300	0.50	-1.0
3,183,198	-		LRK54_RS14300	0.50	-0.6
3,183,198	-		LRK54_RS14300	0.50	-2.5
3,183,198	-		LRK54_RS14300	0.50	+1.5
3,183,198	-		LRK54_RS14300	0.50	-0.0
3,183,198	-		LRK54_RS14300	0.50	-0.4
3,183,198	-		LRK54_RS14300	0.50	-0.7
3,183,199	+		LRK54_RS14300	0.50	+0.5
3,183,199	+		LRK54_RS14300	0.50	-0.0
3,183,199	+		LRK54_RS14300	0.50	+0.7
3,183,199	+		LRK54_RS14300	0.50	+0.2
3,183,200	-		LRK54_RS14300	0.50	-1.6
3,183,200	-		LRK54_RS14300	0.50	+0.6
3,183,200	-		LRK54_RS14300	0.50	+0.5
3,183,200	-		LRK54_RS14300	0.50	-1.2
3,183,200	-		LRK54_RS14300	0.50	-1.2
3,183,200	-		LRK54_RS14300	0.50	-0.2
3,183,200	-		LRK54_RS14300	0.50	-0.1
3,183,200	-		LRK54_RS14300	0.50	+0.3
3,183,371	+		LRK54_RS14300	0.59	+0.8
3,183,371	+		LRK54_RS14300	0.59	-0.3
3,183,371	+		LRK54_RS14300	0.59	-0.5
3,183,371	+		LRK54_RS14300	0.59	+3.9
3,183,372	-		LRK54_RS14300	0.59	+1.5
3,183,372	-		LRK54_RS14300	0.59	-1.4
3,183,372	-		LRK54_RS14300	0.59	-0.7
3,183,372	-		LRK54_RS14300	0.59	-0.0
3,183,372	-		LRK54_RS14300	0.59	+0.0
3,183,372	-		LRK54_RS14300	0.59	-0.9
3,183,372	-		LRK54_RS14300	0.59	-0.3
3,183,372	-		LRK54_RS14300	0.59	-0.7
3,183,372	-		LRK54_RS14300	0.59	-1.2
3,183,372	-		LRK54_RS14300	0.59	-0.9
3,183,389	+		LRK54_RS14300	0.59	+0.0
3,183,389	+		LRK54_RS14300	0.59	+0.2
3,183,390	-		LRK54_RS14300	0.59	+1.4
3,183,390	-		LRK54_RS14300	0.59	+0.8
3,183,390	-		LRK54_RS14300	0.59	-0.4
3,183,390	-		LRK54_RS14300	0.59	-1.5
3,183,401	+		LRK54_RS14300	0.60	-0.2
3,183,401	+		LRK54_RS14300	0.60	-1.4
3,183,402	-		LRK54_RS14300	0.60	+0.2
3,183,495	-		LRK54_RS14300	0.65	+0.2
3,183,495	-		LRK54_RS14300	0.65	-1.2
3,183,566	+		LRK54_RS14300	0.69	-0.5
3,183,566	+		LRK54_RS14300	0.69	-1.5
3,183,567	-		LRK54_RS14300	0.69	-0.2
3,183,567	-		LRK54_RS14300	0.69	+0.4
3,183,704	+		LRK54_RS14300	0.76	-0.2
3,183,704	+		LRK54_RS14300	0.76	+0.4
3,183,704	+		LRK54_RS14300	0.76	-0.7
3,183,704	+		LRK54_RS14300	0.76	-0.4
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3,184,199	+				-1.0
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3,185,002	-		LRK54_RS14305	0.36	-1.9
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