Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09635

Experiment: R2A with nitrite 25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 25 mM
2,112,108	+		LRK54_RS09630	0.87	+0.0
2,112,108	+		LRK54_RS09630	0.87	-1.0
2,112,108	+		LRK54_RS09630	0.87	-1.6
2,112,109	-		LRK54_RS09630	0.87	-1.3
2,112,109	-		LRK54_RS09630	0.87	+0.0
2,112,109	-		LRK54_RS09630	0.87	-0.8
2,112,109	-		LRK54_RS09630	0.87	+0.8
2,112,109	-		LRK54_RS09630	0.87	+0.5
2,112,193	+				-2.0
2,112,193	+				-0.7
2,112,193	+				-0.2
2,112,194	-				+1.1
2,112,307	+				+0.3
2,112,307	+				+0.4
2,112,307	+				+0.2
2,112,307	+				+0.2
2,112,307	+				-0.3
2,112,307	+				-0.6
2,112,307	+				-0.3
2,112,307	+				-0.4
2,112,307	+				-0.7
2,112,307	+				+0.9
2,112,307	+				+0.3
2,112,307	+				+0.8
2,112,307	+				-0.7
2,112,307	+				-0.1
2,112,307	+				+0.8
2,112,307	+				-0.1
2,112,307	+				-0.6
2,112,308	-				-1.8
2,112,308	-				-0.9
2,112,308	-				+0.3
2,112,308	-				-0.2
2,112,308	-				-0.2
2,112,308	-				+1.1
2,112,308	-				-0.6
2,112,308	-				-1.1
2,112,308	-				-0.5
2,112,308	-				-1.1
2,112,308	-				-0.1
2,112,308	-				-1.1
2,112,308	-				+0.5
2,112,308	-				+2.1
2,112,308	-				-2.0
2,112,308	-				-0.1
2,112,308	-				+0.2
2,112,350	+				-0.0
2,112,350	+				-0.3
2,112,350	+				+0.4
2,112,350	+				-0.3
2,112,350	+				-0.5
2,112,350	+				-0.7
2,112,350	+				-0.1
2,112,350	+				+0.4
2,112,350	+				+2.5
2,112,350	+				-0.2
2,112,350	+				+0.2
2,112,351	-				-0.1
2,112,351	-				+0.2
2,112,351	-				-0.9
2,112,351	-				-0.7
2,112,351	-				-0.9
2,112,351	-				+0.1
2,112,351	-				+0.6
2,112,374	-				-0.4
2,112,395	-				-1.0
2,112,395	-				+0.4
2,112,439	+				-1.0
2,112,439	+				+0.3
2,112,440	-				-1.3
2,112,468	-				-0.6
2,112,511	+				+0.2
2,112,511	+				-0.4
2,112,511	+				-0.3
2,112,511	+				-0.6
2,112,511	+				+0.1
2,112,511	+				-0.3
2,112,511	+				-1.6
2,112,511	+				-0.5
2,112,511	+				-1.6
2,112,511	+				+2.5
2,112,511	+				+0.7
2,112,511	+				+0.6
2,112,511	+				-2.1
2,112,512	-				-0.3
2,112,512	-				-1.7
2,112,512	-				-1.1
2,112,512	-				-1.6
2,112,512	-				+0.2
2,112,512	-				-0.4
2,112,597	-				-0.5
2,112,597	-				-1.6
2,112,597	-				-0.3
2,112,623	+				+0.2
2,112,623	+				-0.0
2,112,624	-				+1.0
2,112,806	+				+0.0
2,112,863	+		LRK54_RS09635	0.28	+0.4
2,112,863	+		LRK54_RS09635	0.28	+0.6
2,112,863	+		LRK54_RS09635	0.28	-0.2
2,112,863	+		LRK54_RS09635	0.28	+0.6
2,112,863	+		LRK54_RS09635	0.28	+0.0
2,112,863	+		LRK54_RS09635	0.28	+0.2
2,112,863	+		LRK54_RS09635	0.28	-0.1
2,112,863	+		LRK54_RS09635	0.28	-1.4
2,112,863	+		LRK54_RS09635	0.28	+1.2
2,112,863	+		LRK54_RS09635	0.28	-0.1
2,112,863	+		LRK54_RS09635	0.28	-0.2
2,112,863	+		LRK54_RS09635	0.28	-0.1
2,112,863	+		LRK54_RS09635	0.28	+1.5
2,112,863	+		LRK54_RS09635	0.28	+0.4
2,112,863	+		LRK54_RS09635	0.28	+0.1
2,112,863	+		LRK54_RS09635	0.28	+0.5
2,112,863	+		LRK54_RS09635	0.28	+2.0
2,112,863	+		LRK54_RS09635	0.28	+1.1
2,112,863	+		LRK54_RS09635	0.28	+0.1
2,112,863	+		LRK54_RS09635	0.28	+0.4
2,112,864	-		LRK54_RS09635	0.29	+0.9
2,112,864	-		LRK54_RS09635	0.29	+0.7
2,112,864	-		LRK54_RS09635	0.29	-0.1
2,112,864	-		LRK54_RS09635	0.29	-1.3
2,112,864	-		LRK54_RS09635	0.29	-1.9
2,112,864	-		LRK54_RS09635	0.29	+0.2
2,112,864	-		LRK54_RS09635	0.29	+1.3
2,112,864	-		LRK54_RS09635	0.29	-0.5
2,112,864	-		LRK54_RS09635	0.29	-0.1
2,112,864	-		LRK54_RS09635	0.29	-1.7
2,112,864	-		LRK54_RS09635	0.29	-1.1
2,112,864	-		LRK54_RS09635	0.29	-0.7
2,112,864	-		LRK54_RS09635	0.29	-2.0
2,112,864	-		LRK54_RS09635	0.29	+0.1
2,112,864	-		LRK54_RS09635	0.29	-2.0
2,113,047	+				-0.2
2,113,047	+				-0.7
2,113,047	+				-0.6
2,113,047	+				+0.5
2,113,047	+				+0.3
2,113,047	+				+1.3
2,113,047	+				-0.5
2,113,047	+				+0.4
2,113,047	+				-0.8
2,113,047	+				-1.8
2,113,047	+				-2.0
2,113,047	+				+0.3
2,113,047	+				-2.8
2,113,047	+				+0.1
2,113,047	+				+0.7
2,113,047	+				-0.8
2,113,047	+				-1.2
2,113,047	+				+0.3
2,113,048	-				-0.5
2,113,048	-				+0.3
2,113,048	-				-1.4
2,113,048	-				-0.5
2,113,048	-				+0.3
2,113,048	-				+1.0
2,113,048	-				+0.9
2,113,048	-				+0.4
2,113,048	-				-3.5
2,113,048	-				-0.8
2,113,048	-				-0.7
2,113,048	-				-0.7
2,113,048	-				-0.8
2,113,048	-				-0.7
2,113,048	-				-0.2
2,113,048	-				-0.6
2,113,048	-				+0.5
2,113,048	-				+0.5
2,113,048	-				-0.7
2,113,054	+				-0.5
2,113,054	+				-0.1
2,113,054	+				+0.5
2,113,054	+				+0.7
2,113,055	-				+0.1
2,113,055	-				-0.4
2,113,055	-				+0.5
2,113,055	-				+0.6
2,113,055	-				+0.7
2,113,055	-				+1.3
2,113,055	-				+0.0
2,113,079	+				-0.5
2,113,079	+				-0.1
2,113,079	+				-1.0
2,113,079	+				+0.5
2,113,079	+				-0.2
2,113,079	+				+0.7
2,113,079	+				+0.8
2,113,079	+				-0.7
2,113,079	+				+0.6
2,113,079	+				-1.0
2,113,079	+				-0.8
2,113,079	+				-0.3
2,113,079	+				-0.6
2,113,080	-				-1.3
2,113,080	-				+0.3
2,113,080	-				-0.5
2,113,080	-				-3.1
2,113,080	-				-0.8
2,113,080	-				-1.3
2,113,080	-				-0.8
2,113,080	-				-0.2
2,113,097	+				-0.7
2,113,097	+				+0.2
2,113,097	+				+0.4
2,113,097	+				-0.2
2,113,097	+				+0.7
2,113,097	+				+0.0
2,113,097	+				-0.1
2,113,097	+				-0.2
2,113,097	+				+1.1
2,113,097	+				-0.5
2,113,098	-				+0.2
2,113,098	-				-1.7
2,113,098	-				+1.7
2,113,098	-				-1.6
2,113,098	-				-1.4
2,113,098	-				+0.7
2,113,098	-				-0.5
2,113,098	-				+0.8
2,113,154	+		LRK54_RS09640	0.23	-1.4
2,113,154	+		LRK54_RS09640	0.23	-0.6
2,113,154	+		LRK54_RS09640	0.23	+0.3
2,113,154	+		LRK54_RS09640	0.23	-0.5
2,113,154	+		LRK54_RS09640	0.23	-0.8
2,113,154	+		LRK54_RS09640	0.23	+0.6
2,113,154	+		LRK54_RS09640	0.23	-0.0
2,113,154	+		LRK54_RS09640	0.23	-0.7
2,113,154	+		LRK54_RS09640	0.23	-2.2
2,113,154	+		LRK54_RS09640	0.23	+0.9
2,113,154	+		LRK54_RS09640	0.23	-0.3
2,113,154	+		LRK54_RS09640	0.23	+0.3
2,113,154	+		LRK54_RS09640	0.23	+1.0
2,113,154	+		LRK54_RS09640	0.23	-0.1
2,113,155	-		LRK54_RS09640	0.23	-0.6
2,113,155	-		LRK54_RS09640	0.23	-1.4
2,113,155	-		LRK54_RS09640	0.23	+1.0
2,113,155	-		LRK54_RS09640	0.23	-0.6
2,113,155	-		LRK54_RS09640	0.23	+1.3
2,113,155	-		LRK54_RS09640	0.23	-1.1
2,113,155	-		LRK54_RS09640	0.23	-1.2
2,113,155	-		LRK54_RS09640	0.23	-2.7
2,113,155	-		LRK54_RS09640	0.23	-1.9
2,113,155	-		LRK54_RS09640	0.23	+0.2
2,113,155	-		LRK54_RS09640	0.23	-0.2
2,113,155	-		LRK54_RS09640	0.23	-2.5
2,113,155	-		LRK54_RS09640	0.23	+0.2
2,113,155	-		LRK54_RS09640	0.23	+0.5
2,113,155	-		LRK54_RS09640	0.23	+0.2
2,113,155	-		LRK54_RS09640	0.23	+0.3
2,113,155	-		LRK54_RS09640	0.23	+0.2
2,113,163	+		LRK54_RS09640	0.25	-0.8
2,113,165	+		LRK54_RS09640	0.26	-0.2
2,113,165	+		LRK54_RS09640	0.26	-0.5
2,113,165	+		LRK54_RS09640	0.26	-0.3
2,113,166	-		LRK54_RS09640	0.26	-1.2
2,113,166	-		LRK54_RS09640	0.26	-0.9
2,113,166	-		LRK54_RS09640	0.26	+0.7
2,113,166	-		LRK54_RS09640	0.26	-0.7
2,113,166	-		LRK54_RS09640	0.26	-0.3
2,113,166	-		LRK54_RS09640	0.26	+1.8
2,113,166	-		LRK54_RS09640	0.26	+1.5
2,113,166	-		LRK54_RS09640	0.26	-1.5
2,113,166	-		LRK54_RS09640	0.26	+1.5
2,113,166	-		LRK54_RS09640	0.26	-0.4
2,113,166	-		LRK54_RS09640	0.26	-0.2
2,113,249	+		LRK54_RS09640	0.50	+0.9
2,113,249	+		LRK54_RS09640	0.50	-1.1
2,113,249	+		LRK54_RS09640	0.50	+1.7
2,113,249	+		LRK54_RS09640	0.50	-0.9
2,113,249	+		LRK54_RS09640	0.50	-0.5
2,113,249	+		LRK54_RS09640	0.50	-0.1
2,113,249	+		LRK54_RS09640	0.50	-0.3
2,113,249	+		LRK54_RS09640	0.50	+1.5
2,113,249	+		LRK54_RS09640	0.50	-0.3
2,113,249	+		LRK54_RS09640	0.50	-0.7
2,113,249	+		LRK54_RS09640	0.50	-1.8
2,113,249	+		LRK54_RS09640	0.50	-1.5
2,113,250	-		LRK54_RS09640	0.50	+0.3
2,113,250	-		LRK54_RS09640	0.50	+0.2
2,113,250	-		LRK54_RS09640	0.50	+0.5
2,113,250	-		LRK54_RS09640	0.50	-0.6
2,113,250	-		LRK54_RS09640	0.50	-0.8
2,113,250	-		LRK54_RS09640	0.50	-0.6
2,113,250	-		LRK54_RS09640	0.50	+0.5
2,113,250	-		LRK54_RS09640	0.50	+0.2
2,113,250	-		LRK54_RS09640	0.50	-1.4
2,113,250	-		LRK54_RS09640	0.50	+1.9
2,113,250	-		LRK54_RS09640	0.50	-0.6
2,113,278	-		LRK54_RS09640	0.58	-0.0
2,113,278	-		LRK54_RS09640	0.58	-0.8
2,113,340	-		LRK54_RS09640	0.75	-0.7
2,113,349	-		LRK54_RS09640	0.78	-0.9
2,113,429	+				+0.9
2,113,429	+				-0.4
2,113,429	+				-0.3
2,113,429	+				+0.3
2,113,429	+				+0.5
2,113,429	+				-0.7
2,113,429	+				-0.3
2,113,429	+				-0.7
2,113,429	+				+0.1
2,113,429	+				-0.3
2,113,429	+				-2.3
2,113,429	+				-0.3
2,113,429	+				-2.3
2,113,429	+				+0.4
2,113,429	+				-0.3
2,113,429	+				+0.2
2,113,429	+				+1.5
2,113,429	+				-0.3
2,113,429	+				+0.2
2,113,429	+				-0.2
2,113,429	+				-0.6
2,113,429	+				-0.0
2,113,429	+				-0.1
2,113,429	+				+0.1
2,113,429	+				+1.1
2,113,429	+				-0.6
2,113,429	+				-1.4
2,113,429	+				-0.1
2,113,429	+				-0.4
2,113,429	+				-0.1
2,113,429	+				-0.4
2,113,429	+				-1.2
2,113,429	+				+1.6
2,113,429	+				-0.0
2,113,429	+				+0.9
2,113,429	+				+0.8
2,113,429	+				-0.7
2,113,429	+				+1.3
2,113,429	+				+1.7
2,113,429	+				-1.3
2,113,429	+				-2.5
2,113,429	+				+0.1
2,113,429	+				+0.5
2,113,429	+				+0.5
2,113,429	+				-1.0
2,113,429	+				-0.1
2,113,429	+				+1.2
2,113,429	+				-1.5
2,113,429	+				+0.4
2,113,429	+				-0.5
2,113,429	+				-0.7
2,113,429	+				-0.0
2,113,429	+				-0.1
2,113,429	+				+0.8
2,113,429	+				+0.0
2,113,429	+				-0.1
2,113,429	+				-0.2
2,113,430	-				-1.0
2,113,430	-				+1.5
2,113,430	-				+0.5
2,113,430	-				-0.6
2,113,430	-				+1.5
2,113,430	-				+0.3
2,113,430	-				+0.8
2,113,430	-				+0.3
2,113,430	-				-0.1
2,113,430	-				-1.0
2,113,430	-				-0.2
2,113,430	-				-0.7
2,113,430	-				+0.2
2,113,430	-				-1.7
2,113,430	-				+0.3
2,113,430	-				-1.3
2,113,430	-				-0.7
2,113,430	-				-2.2
2,113,430	-				-0.7
2,113,430	-				-0.5
2,113,430	-				-1.7
2,113,430	-				-0.2
2,113,430	-				-1.7
2,113,430	-				-1.5
2,113,430	-				-0.1
2,113,430	-				+0.4
2,113,430	-				-0.4
2,113,430	-				-1.7
2,113,430	-				-0.2
2,113,430	-				-2.0
2,113,430	-				-0.8
2,113,430	-				-2.8
2,113,430	-				+2.2
2,113,430	-				+1.9
2,113,430	-				-0.9
2,113,430	-				-0.5
2,113,430	-				-2.4
2,113,430	-				+0.3
2,113,430	-				-0.6
2,113,430	-				-0.3
2,113,430	-				-2.2
2,113,430	-				+0.1
2,113,430	-				+0.3
2,113,430	-				-1.6
2,113,430	-				-0.9
2,113,430	-				-0.3
2,113,430	-				+0.4
2,113,430	-				-1.6
2,113,430	-				+0.8
2,113,430	-				-1.2
2,113,460	+				-1.2
2,113,460	+				+2.0
2,113,460	+				+0.1
2,113,461	-				-1.1
2,113,465	+				+1.7
2,113,465	+				+0.2
2,113,465	+				+0.1
2,113,465	+				+0.3
2,113,466	-				-0.1
2,113,466	-				+1.2
2,113,466	-				-2.2
2,113,466	-				-1.3
2,113,466	-				-1.4
2,113,481	+				-1.5
2,113,574	+		LRK54_RS09645	0.19	-1.0
2,113,574	+		LRK54_RS09645	0.19	-0.8
2,113,574	+		LRK54_RS09645	0.19	-0.1
2,113,574	+		LRK54_RS09645	0.19	-0.3
2,113,574	+		LRK54_RS09645	0.19	+1.1
2,113,574	+		LRK54_RS09645	0.19	-0.7
2,113,574	+		LRK54_RS09645	0.19	+0.1
2,113,574	+		LRK54_RS09645	0.19	+0.2
2,113,574	+		LRK54_RS09645	0.19	+0.5
2,113,574	+		LRK54_RS09645	0.19	-0.8
2,113,575	-		LRK54_RS09645	0.19	-1.1
2,113,575	-		LRK54_RS09645	0.19	+0.5
2,113,575	-		LRK54_RS09645	0.19	+0.4
2,113,575	-		LRK54_RS09645	0.19	-2.0
2,113,575	-		LRK54_RS09645	0.19	-0.8
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