Experiment: D-Galactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS22225 and CA265_RS22230 are separated by 1 nucleotides CA265_RS22230 and CA265_RS22235 are separated by 12 nucleotides CA265_RS22235 and CA265_RS22240 are separated by 1 nucleotides CA265_RS22240 and CA265_RS22245 are separated by 3 nucleotides
CA265_RS22225: CA265_RS22225 - hypothetical protein, at 5,460,714 to 5,461,265
_RS22225
CA265_RS22230: CA265_RS22230 - hypothetical protein, at 5,461,267 to 5,461,854
_RS22230
CA265_RS22235: CA265_RS22235 - type IV secretion protein Rhs, at 5,461,867 to 5,463,666
_RS22235
CA265_RS22240: CA265_RS22240 - hypothetical protein, at 5,463,668 to 5,464,471
_RS22240
CA265_RS22245: CA265_RS22245 - hypothetical protein, at 5,464,475 to 5,466,127
_RS22245
Position (kb) 5461
5462
5463
5464 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5460.897 kb on - strand, within CA265_RS22225 at 5460.986 kb on + strand, within CA265_RS22225 at 5461.086 kb on + strand, within CA265_RS22225 at 5461.087 kb on - strand, within CA265_RS22225 at 5461.224 kb on - strand at 5461.224 kb on - strand at 5461.224 kb on - strand at 5461.232 kb on + strand at 5461.233 kb on - strand at 5461.323 kb on + strand at 5461.369 kb on + strand, within CA265_RS22230 at 5461.374 kb on + strand, within CA265_RS22230 at 5461.375 kb on - strand, within CA265_RS22230 at 5461.375 kb on - strand, within CA265_RS22230 at 5461.380 kb on + strand, within CA265_RS22230 at 5461.425 kb on + strand, within CA265_RS22230 at 5461.426 kb on - strand, within CA265_RS22230 at 5461.426 kb on - strand, within CA265_RS22230 at 5461.428 kb on + strand, within CA265_RS22230 at 5461.429 kb on - strand, within CA265_RS22230 at 5461.540 kb on - strand, within CA265_RS22230 at 5461.555 kb on - strand, within CA265_RS22230 at 5461.620 kb on + strand, within CA265_RS22230 at 5461.620 kb on + strand, within CA265_RS22230 at 5461.738 kb on - strand, within CA265_RS22230 at 5461.738 kb on - strand, within CA265_RS22230 at 5461.788 kb on + strand, within CA265_RS22230 at 5461.789 kb on - strand, within CA265_RS22230 at 5461.789 kb on - strand, within CA265_RS22230 at 5461.894 kb on - strand at 5461.894 kb on - strand at 5461.898 kb on + strand at 5461.899 kb on - strand at 5461.933 kb on - strand at 5461.933 kb on - strand at 5461.937 kb on + strand at 5461.951 kb on - strand at 5461.964 kb on - strand at 5461.981 kb on - strand at 5462.164 kb on + strand, within CA265_RS22235 at 5462.279 kb on + strand, within CA265_RS22235 at 5462.279 kb on + strand, within CA265_RS22235 at 5462.307 kb on + strand, within CA265_RS22235 at 5462.307 kb on + strand, within CA265_RS22235 at 5462.314 kb on + strand, within CA265_RS22235 at 5462.315 kb on - strand at 5462.315 kb on - strand, within CA265_RS22235 at 5462.315 kb on - strand, within CA265_RS22235 at 5462.386 kb on + strand, within CA265_RS22235 at 5462.477 kb on - strand, within CA265_RS22235 at 5462.477 kb on - strand, within CA265_RS22235 at 5462.518 kb on + strand, within CA265_RS22235 at 5462.597 kb on + strand at 5462.598 kb on - strand, within CA265_RS22235 at 5462.617 kb on + strand, within CA265_RS22235 at 5462.622 kb on + strand, within CA265_RS22235 at 5462.654 kb on + strand, within CA265_RS22235 at 5462.655 kb on - strand, within CA265_RS22235 at 5462.707 kb on - strand, within CA265_RS22235 at 5462.707 kb on - strand, within CA265_RS22235 at 5462.726 kb on + strand, within CA265_RS22235 at 5462.784 kb on + strand, within CA265_RS22235 at 5462.808 kb on + strand, within CA265_RS22235 at 5462.952 kb on + strand, within CA265_RS22235 at 5462.969 kb on + strand, within CA265_RS22235 at 5463.030 kb on + strand, within CA265_RS22235 at 5463.066 kb on + strand, within CA265_RS22235 at 5463.168 kb on + strand, within CA265_RS22235 at 5463.169 kb on - strand, within CA265_RS22235 at 5463.217 kb on - strand, within CA265_RS22235 at 5463.252 kb on - strand, within CA265_RS22235 at 5463.270 kb on + strand, within CA265_RS22235 at 5463.270 kb on + strand, within CA265_RS22235 at 5463.271 kb on - strand, within CA265_RS22235 at 5463.271 kb on - strand, within CA265_RS22235 at 5463.271 kb on - strand, within CA265_RS22235 at 5463.271 kb on - strand, within CA265_RS22235 at 5463.276 kb on - strand, within CA265_RS22235 at 5463.305 kb on + strand, within CA265_RS22235 at 5463.331 kb on - strand, within CA265_RS22235 at 5463.354 kb on + strand, within CA265_RS22235 at 5463.375 kb on + strand, within CA265_RS22235 at 5463.375 kb on + strand, within CA265_RS22235 at 5463.376 kb on - strand, within CA265_RS22235 at 5463.379 kb on - strand, within CA265_RS22235 at 5463.430 kb on - strand, within CA265_RS22235 at 5463.430 kb on - strand, within CA265_RS22235 at 5463.439 kb on - strand, within CA265_RS22235 at 5463.508 kb on - strand at 5463.540 kb on - strand at 5463.543 kb on + strand at 5463.543 kb on + strand at 5463.613 kb on - strand at 5463.625 kb on - strand at 5463.625 kb on - strand at 5463.753 kb on + strand, within CA265_RS22240 at 5463.761 kb on + strand, within CA265_RS22240 at 5463.762 kb on - strand, within CA265_RS22240 at 5463.765 kb on + strand, within CA265_RS22240 at 5463.765 kb on + strand, within CA265_RS22240 at 5463.766 kb on - strand, within CA265_RS22240 at 5463.768 kb on + strand, within CA265_RS22240 at 5463.819 kb on + strand, within CA265_RS22240 at 5463.820 kb on - strand, within CA265_RS22240 at 5463.882 kb on - strand, within CA265_RS22240 at 5463.900 kb on - strand, within CA265_RS22240 at 5463.905 kb on + strand, within CA265_RS22240 at 5463.927 kb on + strand, within CA265_RS22240 at 5463.931 kb on + strand, within CA265_RS22240 at 5463.932 kb on - strand, within CA265_RS22240 at 5463.932 kb on - strand, within CA265_RS22240 at 5463.957 kb on + strand, within CA265_RS22240 at 5463.957 kb on + strand at 5463.958 kb on - strand, within CA265_RS22240 at 5463.989 kb on - strand, within CA265_RS22240 at 5464.022 kb on - strand, within CA265_RS22240 at 5464.122 kb on + strand, within CA265_RS22240 at 5464.136 kb on + strand, within CA265_RS22240 at 5464.250 kb on + strand, within CA265_RS22240 at 5464.270 kb on + strand, within CA265_RS22240 at 5464.270 kb on + strand, within CA265_RS22240 at 5464.276 kb on - strand, within CA265_RS22240 at 5464.294 kb on - strand, within CA265_RS22240 at 5464.294 kb on - strand, within CA265_RS22240 at 5464.297 kb on + strand, within CA265_RS22240 at 5464.298 kb on - strand, within CA265_RS22240 at 5464.340 kb on - strand, within CA265_RS22240 at 5464.343 kb on - strand, within CA265_RS22240 at 5464.371 kb on - strand, within CA265_RS22240 at 5464.373 kb on - strand, within CA265_RS22240 at 5464.434 kb on - strand at 5464.446 kb on + strand at 5464.601 kb on - strand at 5464.648 kb on + strand, within CA265_RS22245 at 5464.658 kb on - strand, within CA265_RS22245
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose (C) remove 5,460,897 - CA265_RS22225 0.33 -1.0 5,460,986 + CA265_RS22225 0.49 +0.3 5,461,086 + CA265_RS22225 0.67 +0.2 5,461,087 - CA265_RS22225 0.68 -0.2 5,461,224 - -0.0 5,461,224 - -0.4 5,461,224 - +0.4 5,461,232 + +0.0 5,461,233 - +0.2 5,461,323 + +0.4 5,461,369 + CA265_RS22230 0.17 +0.1 5,461,374 + CA265_RS22230 0.18 -1.0 5,461,375 - CA265_RS22230 0.18 -0.9 5,461,375 - CA265_RS22230 0.18 -0.5 5,461,380 + CA265_RS22230 0.19 +0.1 5,461,425 + CA265_RS22230 0.27 +0.0 5,461,426 - CA265_RS22230 0.27 +0.5 5,461,426 - CA265_RS22230 0.27 -0.0 5,461,428 + CA265_RS22230 0.27 -2.2 5,461,429 - CA265_RS22230 0.28 -0.2 5,461,540 - CA265_RS22230 0.46 -0.1 5,461,555 - CA265_RS22230 0.49 -0.9 5,461,620 + CA265_RS22230 0.60 -1.2 5,461,620 + CA265_RS22230 0.60 -0.3 5,461,738 - CA265_RS22230 0.80 +0.7 5,461,738 - CA265_RS22230 0.80 -0.4 5,461,788 + CA265_RS22230 0.89 -1.0 5,461,789 - CA265_RS22230 0.89 +0.7 5,461,789 - CA265_RS22230 0.89 +0.4 5,461,894 - -0.7 5,461,894 - +0.6 5,461,898 + -0.9 5,461,899 - +1.1 5,461,933 - +0.8 5,461,933 - -0.3 5,461,937 + +0.4 5,461,951 - +0.7 5,461,964 - -0.4 5,461,981 - +0.4 5,462,164 + CA265_RS22235 0.17 +0.2 5,462,279 + CA265_RS22235 0.23 -3.1 5,462,279 + CA265_RS22235 0.23 +0.1 5,462,307 + CA265_RS22235 0.24 -0.7 5,462,307 + CA265_RS22235 0.24 -1.1 5,462,314 + CA265_RS22235 0.25 -1.1 5,462,315 - +3.8 5,462,315 - CA265_RS22235 0.25 +0.5 5,462,315 - CA265_RS22235 0.25 +1.2 5,462,386 + CA265_RS22235 0.29 +0.2 5,462,477 - CA265_RS22235 0.34 +0.2 5,462,477 - CA265_RS22235 0.34 +0.5 5,462,518 + CA265_RS22235 0.36 +0.4 5,462,597 + +1.2 5,462,598 - CA265_RS22235 0.41 +0.8 5,462,617 + CA265_RS22235 0.42 -0.4 5,462,622 + CA265_RS22235 0.42 +0.2 5,462,654 + CA265_RS22235 0.44 +0.7 5,462,655 - CA265_RS22235 0.44 +1.3 5,462,707 - CA265_RS22235 0.47 +0.5 5,462,707 - CA265_RS22235 0.47 +2.0 5,462,726 + CA265_RS22235 0.48 +0.6 5,462,784 + CA265_RS22235 0.51 +0.8 5,462,808 + CA265_RS22235 0.52 -0.2 5,462,952 + CA265_RS22235 0.60 +0.6 5,462,969 + CA265_RS22235 0.61 +0.2 5,463,030 + CA265_RS22235 0.65 +0.3 5,463,066 + CA265_RS22235 0.67 +0.4 5,463,168 + CA265_RS22235 0.72 +0.5 5,463,169 - CA265_RS22235 0.72 +0.4 5,463,217 - CA265_RS22235 0.75 -0.3 5,463,252 - CA265_RS22235 0.77 +0.2 5,463,270 + CA265_RS22235 0.78 +2.0 5,463,270 + CA265_RS22235 0.78 +1.7 5,463,271 - CA265_RS22235 0.78 +0.6 5,463,271 - CA265_RS22235 0.78 +0.8 5,463,271 - CA265_RS22235 0.78 +0.1 5,463,271 - CA265_RS22235 0.78 -0.1 5,463,276 - CA265_RS22235 0.78 -0.4 5,463,305 + CA265_RS22235 0.80 -0.2 5,463,331 - CA265_RS22235 0.81 +0.2 5,463,354 + CA265_RS22235 0.83 -0.5 5,463,375 + CA265_RS22235 0.84 -0.3 5,463,375 + CA265_RS22235 0.84 +1.4 5,463,376 - CA265_RS22235 0.84 -0.2 5,463,379 - CA265_RS22235 0.84 +0.6 5,463,430 - CA265_RS22235 0.87 -1.1 5,463,430 - CA265_RS22235 0.87 +1.0 5,463,439 - CA265_RS22235 0.87 +1.1 5,463,508 - -0.1 5,463,540 - +1.5 5,463,543 + -0.4 5,463,543 + +0.2 5,463,613 - +0.0 5,463,625 - +0.2 5,463,625 - +0.2 5,463,753 + CA265_RS22240 0.11 +0.2 5,463,761 + CA265_RS22240 0.12 -2.4 5,463,762 - CA265_RS22240 0.12 +0.4 5,463,765 + CA265_RS22240 0.12 +0.7 5,463,765 + CA265_RS22240 0.12 +0.6 5,463,766 - CA265_RS22240 0.12 +0.4 5,463,768 + CA265_RS22240 0.12 +0.8 5,463,819 + CA265_RS22240 0.19 +0.1 5,463,820 - CA265_RS22240 0.19 +0.2 5,463,882 - CA265_RS22240 0.27 +0.2 5,463,900 - CA265_RS22240 0.29 +0.5 5,463,905 + CA265_RS22240 0.29 +0.8 5,463,927 + CA265_RS22240 0.32 -1.0 5,463,931 + CA265_RS22240 0.33 -0.0 5,463,932 - CA265_RS22240 0.33 +1.3 5,463,932 - CA265_RS22240 0.33 -0.1 5,463,957 + CA265_RS22240 0.36 +0.4 5,463,957 + +0.6 5,463,958 - CA265_RS22240 0.36 +0.1 5,463,989 - CA265_RS22240 0.40 -0.4 5,464,022 - CA265_RS22240 0.44 -0.1 5,464,122 + CA265_RS22240 0.56 +0.2 5,464,136 + CA265_RS22240 0.58 -0.1 5,464,250 + CA265_RS22240 0.72 +0.5 5,464,270 + CA265_RS22240 0.75 -1.4 5,464,270 + CA265_RS22240 0.75 -0.4 5,464,276 - CA265_RS22240 0.76 -0.4 5,464,294 - CA265_RS22240 0.78 -1.6 5,464,294 - CA265_RS22240 0.78 -0.2 5,464,297 + CA265_RS22240 0.78 +0.4 5,464,298 - CA265_RS22240 0.78 -1.5 5,464,340 - CA265_RS22240 0.84 +0.5 5,464,343 - CA265_RS22240 0.84 +0.2 5,464,371 - CA265_RS22240 0.87 +0.4 5,464,373 - CA265_RS22240 0.88 +0.3 5,464,434 - +0.7 5,464,446 + -2.0 5,464,601 - -0.8 5,464,648 + CA265_RS22245 0.10 -0.1 5,464,658 - CA265_RS22245 0.11 -0.4
Or see this region's nucleotide sequence