Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20125 and ABZR87_RS20130 are separated by 149 nucleotides ABZR87_RS20130 and ABZR87_RS20135 are separated by 261 nucleotides
ABZR87_RS20125: ABZR87_RS20125 - contractile injection system protein, VgrG/Pvc8 family, at 895,039 to 897,888
_RS20125
ABZR87_RS20130: ABZR87_RS20130 - hypothetical protein, at 898,038 to 898,805
_RS20130
ABZR87_RS20135: ABZR87_RS20135 - M15 family metallopeptidase, at 899,067 to 899,924
_RS20135
Position (kb) 898
899 Strain fitness (log2 ratio) -2
-1
0
1 at 897.059 kb on + strand, within ABZR87_RS20125 at 897.059 kb on + strand, within ABZR87_RS20125 at 897.059 kb on + strand, within ABZR87_RS20125 at 897.059 kb on + strand, within ABZR87_RS20125 at 897.059 kb on + strand, within ABZR87_RS20125 at 897.059 kb on + strand, within ABZR87_RS20125 at 897.059 kb on + strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.060 kb on - strand, within ABZR87_RS20125 at 897.383 kb on + strand, within ABZR87_RS20125 at 897.383 kb on + strand, within ABZR87_RS20125 at 897.420 kb on + strand, within ABZR87_RS20125 at 897.421 kb on - strand, within ABZR87_RS20125 at 897.473 kb on + strand, within ABZR87_RS20125 at 897.834 kb on + strand at 897.834 kb on + strand at 897.834 kb on + strand at 897.835 kb on - strand at 897.835 kb on - strand at 897.835 kb on - strand at 897.835 kb on - strand at 897.835 kb on - strand at 897.835 kb on - strand at 897.835 kb on - strand at 897.836 kb on + strand at 897.836 kb on + strand at 897.836 kb on + strand at 897.836 kb on + strand at 897.836 kb on + strand at 897.837 kb on - strand at 897.837 kb on - strand at 897.917 kb on + strand at 897.917 kb on + strand at 897.918 kb on - strand at 897.954 kb on + strand at 897.954 kb on + strand at 897.954 kb on + strand at 897.954 kb on + strand at 897.955 kb on - strand at 897.955 kb on - strand at 898.010 kb on - strand at 898.040 kb on - strand at 898.051 kb on + strand at 898.052 kb on - strand at 898.052 kb on - strand at 898.052 kb on - strand at 898.052 kb on - strand at 898.052 kb on - strand at 898.052 kb on - strand at 898.074 kb on - strand at 898.074 kb on - strand at 898.074 kb on - strand at 898.074 kb on - strand at 898.211 kb on + strand, within ABZR87_RS20130 at 898.211 kb on + strand, within ABZR87_RS20130 at 898.212 kb on - strand, within ABZR87_RS20130 at 898.212 kb on - strand, within ABZR87_RS20130 at 898.212 kb on - strand, within ABZR87_RS20130 at 898.212 kb on - strand, within ABZR87_RS20130 at 898.376 kb on + strand, within ABZR87_RS20130 at 898.376 kb on + strand, within ABZR87_RS20130 at 898.651 kb on + strand, within ABZR87_RS20130 at 898.651 kb on + strand, within ABZR87_RS20130 at 898.724 kb on + strand, within ABZR87_RS20130 at 898.724 kb on + strand, within ABZR87_RS20130 at 898.724 kb on + strand, within ABZR87_RS20130 at 898.725 kb on - strand, within ABZR87_RS20130 at 898.725 kb on - strand, within ABZR87_RS20130 at 898.725 kb on - strand, within ABZR87_RS20130 at 898.725 kb on - strand, within ABZR87_RS20130 at 898.800 kb on - strand at 898.800 kb on - strand at 898.826 kb on - strand at 898.826 kb on - strand at 898.826 kb on - strand at 898.843 kb on + strand at 898.844 kb on - strand at 898.844 kb on - strand at 898.844 kb on - strand at 898.844 kb on - strand at 898.844 kb on - strand at 898.850 kb on + strand at 898.888 kb on + strand at 898.889 kb on - strand at 898.955 kb on + strand at 898.965 kb on + strand at 898.966 kb on - strand at 899.019 kb on + strand at 899.066 kb on + strand at 899.091 kb on + strand at 899.091 kb on + strand at 899.092 kb on - strand at 899.092 kb on - strand at 899.287 kb on + strand, within ABZR87_RS20135 at 899.577 kb on + strand, within ABZR87_RS20135 at 899.578 kb on - strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.803 kb on - strand, within ABZR87_RS20135
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 897,059 + ABZR87_RS20125 0.71 -0.2 897,059 + ABZR87_RS20125 0.71 +0.2 897,059 + ABZR87_RS20125 0.71 -1.9 897,059 + ABZR87_RS20125 0.71 -0.4 897,059 + ABZR87_RS20125 0.71 +0.2 897,059 + ABZR87_RS20125 0.71 -0.5 897,059 + ABZR87_RS20125 0.71 +0.0 897,060 - ABZR87_RS20125 0.71 -0.4 897,060 - ABZR87_RS20125 0.71 +0.1 897,060 - ABZR87_RS20125 0.71 +0.4 897,060 - ABZR87_RS20125 0.71 -0.2 897,060 - ABZR87_RS20125 0.71 +0.3 897,060 - ABZR87_RS20125 0.71 +0.3 897,060 - ABZR87_RS20125 0.71 -0.3 897,060 - ABZR87_RS20125 0.71 -0.3 897,060 - ABZR87_RS20125 0.71 +0.5 897,383 + ABZR87_RS20125 0.82 -0.5 897,383 + ABZR87_RS20125 0.82 -0.0 897,420 + ABZR87_RS20125 0.84 +1.3 897,421 - ABZR87_RS20125 0.84 -1.2 897,473 + ABZR87_RS20125 0.85 +0.6 897,834 + -0.4 897,834 + +0.8 897,834 + -0.1 897,835 - +0.5 897,835 - +0.8 897,835 - +0.3 897,835 - +0.8 897,835 - +0.7 897,835 - +0.6 897,835 - +0.4 897,836 + -1.2 897,836 + +0.2 897,836 + -0.1 897,836 + +1.7 897,836 + -0.6 897,837 - -0.4 897,837 - +0.5 897,917 + -1.1 897,917 + +1.1 897,918 - -0.4 897,954 + -0.4 897,954 + -0.9 897,954 + +0.5 897,954 + -0.5 897,955 - +0.4 897,955 - -0.6 898,010 - +0.0 898,040 - +0.1 898,051 + -0.4 898,052 - +1.4 898,052 - +0.2 898,052 - +0.5 898,052 - -0.3 898,052 - -0.2 898,052 - -1.1 898,074 - -0.0 898,074 - +0.8 898,074 - +0.2 898,074 - -0.1 898,211 + ABZR87_RS20130 0.23 -0.5 898,211 + ABZR87_RS20130 0.23 -0.3 898,212 - ABZR87_RS20130 0.23 +0.4 898,212 - ABZR87_RS20130 0.23 -0.1 898,212 - ABZR87_RS20130 0.23 +0.2 898,212 - ABZR87_RS20130 0.23 +0.7 898,376 + ABZR87_RS20130 0.44 -0.3 898,376 + ABZR87_RS20130 0.44 +0.8 898,651 + ABZR87_RS20130 0.80 +0.7 898,651 + ABZR87_RS20130 0.80 +0.9 898,724 + ABZR87_RS20130 0.89 +0.2 898,724 + ABZR87_RS20130 0.89 -0.5 898,724 + ABZR87_RS20130 0.89 +0.6 898,725 - ABZR87_RS20130 0.89 -0.0 898,725 - ABZR87_RS20130 0.89 -1.3 898,725 - ABZR87_RS20130 0.89 -1.5 898,725 - ABZR87_RS20130 0.89 +0.4 898,800 - -0.5 898,800 - -0.7 898,826 - -0.1 898,826 - -1.4 898,826 - +0.7 898,843 + +0.3 898,844 - -0.1 898,844 - +0.2 898,844 - -0.4 898,844 - +0.4 898,844 - +0.0 898,850 + -0.6 898,888 + +0.5 898,889 - +0.2 898,955 + +0.7 898,965 + -0.4 898,966 - +0.9 899,019 + -0.1 899,066 + -0.7 899,091 + -0.1 899,091 + -1.1 899,092 - -1.4 899,092 - +1.3 899,287 + ABZR87_RS20135 0.26 -0.5 899,577 + ABZR87_RS20135 0.59 -0.2 899,578 - ABZR87_RS20135 0.60 -0.3 899,703 + ABZR87_RS20135 0.74 +0.0 899,703 + ABZR87_RS20135 0.74 +1.0 899,703 + ABZR87_RS20135 0.74 +0.2 899,703 + ABZR87_RS20135 0.74 +0.5 899,703 + ABZR87_RS20135 0.74 -0.3 899,703 + ABZR87_RS20135 0.74 +0.8 899,703 + ABZR87_RS20135 0.74 -0.5 899,704 - ABZR87_RS20135 0.74 -1.8 899,704 - ABZR87_RS20135 0.74 -0.3 899,704 - ABZR87_RS20135 0.74 -0.7 899,704 - ABZR87_RS20135 0.74 -0.3 899,704 - ABZR87_RS20135 0.74 +1.3 899,803 - ABZR87_RS20135 0.86 -0.1
Or see this region's nucleotide sequence