Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08050

Experiment: Protocatechuic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS08040 and ABZR87_RS08045 are separated by 49 nucleotidesABZR87_RS08045 and ABZR87_RS08050 are separated by 325 nucleotidesABZR87_RS08050 and ABZR87_RS08055 overlap by 4 nucleotidesABZR87_RS08055 and ABZR87_RS08060 are separated by 2 nucleotides ABZR87_RS08040: ABZR87_RS08040 - lipopolysaccharide heptosyltransferase II, at 1,707,594 to 1,708,619 _RS08040 ABZR87_RS08045: ABZR87_RS08045 - zinc-finger domain-containing protein, at 1,708,669 to 1,708,866 _RS08045 ABZR87_RS08050: ABZR87_RS08050 - AzlC family ABC transporter permease, at 1,709,192 to 1,709,986 _RS08050 ABZR87_RS08055: ABZR87_RS08055 - AzlD domain-containing protein, at 1,709,983 to 1,710,306 _RS08055 ABZR87_RS08060: ABZR87_RS08060 - EamA family transporter RarD, at 1,710,309 to 1,711,205 _RS08060 Position (kb) 1709 1710Strain fitness (log2 ratio) -3 -2 -1 0 1at 1708.291 kb on + strand, within ABZR87_RS08040at 1708.292 kb on - strand, within ABZR87_RS08040at 1708.292 kb on - strand, within ABZR87_RS08040at 1708.360 kb on + strand, within ABZR87_RS08040at 1708.360 kb on + strand, within ABZR87_RS08040at 1708.360 kb on + strand, within ABZR87_RS08040at 1708.361 kb on - strand, within ABZR87_RS08040at 1708.361 kb on - strand, within ABZR87_RS08040at 1708.361 kb on - strand, within ABZR87_RS08040at 1708.361 kb on - strand, within ABZR87_RS08040at 1708.361 kb on - strand, within ABZR87_RS08040at 1708.407 kb on - strand, within ABZR87_RS08040at 1708.407 kb on - strand, within ABZR87_RS08040at 1708.650 kb on + strandat 1708.650 kb on + strandat 1708.650 kb on + strandat 1708.650 kb on + strandat 1708.650 kb on + strandat 1708.650 kb on + strandat 1708.650 kb on + strandat 1708.651 kb on - strandat 1708.651 kb on - strandat 1708.651 kb on - strandat 1708.651 kb on - strandat 1708.651 kb on - strandat 1708.651 kb on - strandat 1708.709 kb on + strand, within ABZR87_RS08045at 1708.710 kb on - strand, within ABZR87_RS08045at 1708.710 kb on - strand, within ABZR87_RS08045at 1708.724 kb on + strand, within ABZR87_RS08045at 1708.778 kb on + strand, within ABZR87_RS08045at 1708.778 kb on + strand, within ABZR87_RS08045at 1708.778 kb on + strand, within ABZR87_RS08045at 1708.779 kb on - strand, within ABZR87_RS08045at 1708.779 kb on - strand, within ABZR87_RS08045at 1708.916 kb on + strandat 1708.916 kb on + strandat 1708.917 kb on - strandat 1708.917 kb on - strandat 1708.917 kb on - strandat 1708.955 kb on + strandat 1708.955 kb on + strandat 1708.955 kb on + strandat 1708.956 kb on - strandat 1708.956 kb on - strandat 1709.059 kb on + strandat 1709.059 kb on + strandat 1709.059 kb on + strandat 1709.059 kb on + strandat 1709.060 kb on - strandat 1709.060 kb on - strandat 1709.071 kb on + strandat 1709.071 kb on + strandat 1709.073 kb on + strandat 1709.073 kb on + strandat 1709.074 kb on - strandat 1709.074 kb on - strandat 1709.088 kb on + strandat 1709.088 kb on + strandat 1709.200 kb on - strandat 1709.285 kb on + strand, within ABZR87_RS08050at 1709.285 kb on + strand, within ABZR87_RS08050at 1709.285 kb on + strand, within ABZR87_RS08050at 1709.285 kb on + strand, within ABZR87_RS08050at 1709.285 kb on + strand, within ABZR87_RS08050at 1709.286 kb on - strand, within ABZR87_RS08050at 1709.286 kb on - strand, within ABZR87_RS08050at 1709.286 kb on - strand, within ABZR87_RS08050at 1709.286 kb on - strand, within ABZR87_RS08050at 1709.286 kb on - strand, within ABZR87_RS08050at 1709.286 kb on - strand, within ABZR87_RS08050at 1709.286 kb on - strand, within ABZR87_RS08050at 1709.287 kb on + strand, within ABZR87_RS08050at 1709.287 kb on + strand, within ABZR87_RS08050at 1709.287 kb on + strand, within ABZR87_RS08050at 1709.287 kb on + strand, within ABZR87_RS08050at 1709.287 kb on + strand, within ABZR87_RS08050at 1709.287 kb on + strand, within ABZR87_RS08050at 1709.288 kb on - strand, within ABZR87_RS08050at 1709.288 kb on - strand, within ABZR87_RS08050at 1709.288 kb on - strand, within ABZR87_RS08050at 1709.288 kb on - strand, within ABZR87_RS08050at 1709.288 kb on - strand, within ABZR87_RS08050at 1709.393 kb on + strand, within ABZR87_RS08050at 1709.393 kb on + strand, within ABZR87_RS08050at 1709.393 kb on + strand, within ABZR87_RS08050at 1709.394 kb on - strand, within ABZR87_RS08050at 1709.394 kb on - strand, within ABZR87_RS08050at 1709.639 kb on + strand, within ABZR87_RS08050at 1709.639 kb on + strand, within ABZR87_RS08050at 1709.639 kb on + strand, within ABZR87_RS08050at 1709.639 kb on + strand, within ABZR87_RS08050at 1709.640 kb on - strand, within ABZR87_RS08050at 1709.640 kb on - strand, within ABZR87_RS08050at 1709.640 kb on - strand, within ABZR87_RS08050at 1709.642 kb on + strand, within ABZR87_RS08050at 1709.642 kb on + strand, within ABZR87_RS08050at 1709.642 kb on + strand, within ABZR87_RS08050at 1709.643 kb on - strand, within ABZR87_RS08050at 1709.643 kb on - strand, within ABZR87_RS08050at 1709.643 kb on - strand, within ABZR87_RS08050at 1709.643 kb on - strand, within ABZR87_RS08050at 1709.643 kb on - strand, within ABZR87_RS08050at 1710.229 kb on + strand, within ABZR87_RS08055at 1710.229 kb on + strand, within ABZR87_RS08055at 1710.229 kb on + strand, within ABZR87_RS08055at 1710.229 kb on + strand, within ABZR87_RS08055at 1710.229 kb on + strand, within ABZR87_RS08055at 1710.229 kb on + strand, within ABZR87_RS08055at 1710.229 kb on + strand, within ABZR87_RS08055at 1710.230 kb on - strand, within ABZR87_RS08055at 1710.230 kb on - strand, within ABZR87_RS08055at 1710.230 kb on - strand, within ABZR87_RS08055at 1710.230 kb on - strand, within ABZR87_RS08055at 1710.354 kb on + strandat 1710.354 kb on + strandat 1710.381 kb on + strandat 1710.381 kb on + strandat 1710.382 kb on - strandat 1710.382 kb on - strandat 1710.382 kb on - strandat 1710.531 kb on + strand, within ABZR87_RS08060at 1710.531 kb on + strand, within ABZR87_RS08060at 1710.573 kb on + strand, within ABZR87_RS08060at 1710.573 kb on + strand, within ABZR87_RS08060at 1710.573 kb on + strand, within ABZR87_RS08060at 1710.573 kb on + strand, within ABZR87_RS08060at 1710.573 kb on + strand, within ABZR87_RS08060at 1710.573 kb on + strand, within ABZR87_RS08060at 1710.573 kb on + strand, within ABZR87_RS08060at 1710.573 kb on + strand, within ABZR87_RS08060at 1710.573 kb on + strand, within ABZR87_RS08060at 1710.573 kb on + strand, within ABZR87_RS08060at 1710.573 kb on + strand, within ABZR87_RS08060at 1710.574 kb on - strand, within ABZR87_RS08060at 1710.574 kb on - strand, within ABZR87_RS08060at 1710.574 kb on - strand, within ABZR87_RS08060at 1710.574 kb on - strand, within ABZR87_RS08060at 1710.795 kb on + strand, within ABZR87_RS08060at 1710.795 kb on + strand, within ABZR87_RS08060at 1710.796 kb on - strand, within ABZR87_RS08060at 1710.796 kb on - strand, within ABZR87_RS08060at 1710.882 kb on + strand, within ABZR87_RS08060at 1710.882 kb on + strand, within ABZR87_RS08060at 1710.882 kb on + strand, within ABZR87_RS08060at 1710.883 kb on - strand, within ABZR87_RS08060

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
remove
1,708,291 + ABZR87_RS08040 0.68 -1.2
1,708,292 - ABZR87_RS08040 0.68 -2.8
1,708,292 - ABZR87_RS08040 0.68 -3.0
1,708,360 + ABZR87_RS08040 0.75 -2.3
1,708,360 + ABZR87_RS08040 0.75 -2.8
1,708,360 + ABZR87_RS08040 0.75 -0.6
1,708,361 - ABZR87_RS08040 0.75 -1.3
1,708,361 - ABZR87_RS08040 0.75 -3.4
1,708,361 - ABZR87_RS08040 0.75 -1.1
1,708,361 - ABZR87_RS08040 0.75 -1.4
1,708,361 - ABZR87_RS08040 0.75 -0.5
1,708,407 - ABZR87_RS08040 0.79 -1.0
1,708,407 - ABZR87_RS08040 0.79 -1.3
1,708,650 + +0.9
1,708,650 + +0.9
1,708,650 + +0.5
1,708,650 + -0.7
1,708,650 + +0.2
1,708,650 + +0.1
1,708,650 + +0.8
1,708,651 - -0.1
1,708,651 - +0.5
1,708,651 - -0.1
1,708,651 - -0.7
1,708,651 - -0.7
1,708,651 - +0.1
1,708,709 + ABZR87_RS08045 0.20 +0.6
1,708,710 - ABZR87_RS08045 0.21 +0.4
1,708,710 - ABZR87_RS08045 0.21 -1.1
1,708,724 + ABZR87_RS08045 0.28 -0.7
1,708,778 + ABZR87_RS08045 0.55 -1.0
1,708,778 + ABZR87_RS08045 0.55 +0.4
1,708,778 + ABZR87_RS08045 0.55 +0.1
1,708,779 - ABZR87_RS08045 0.56 -0.6
1,708,779 - ABZR87_RS08045 0.56 -0.4
1,708,916 + -1.4
1,708,916 + +0.2
1,708,917 - +0.0
1,708,917 - +0.1
1,708,917 - -0.6
1,708,955 + +0.5
1,708,955 + -0.2
1,708,955 + -0.0
1,708,956 - -0.5
1,708,956 - -0.2
1,709,059 + +0.4
1,709,059 + +0.5
1,709,059 + +0.3
1,709,059 + -0.9
1,709,060 - +0.0
1,709,060 - -0.8
1,709,071 + +0.4
1,709,071 + +0.4
1,709,073 + -0.2
1,709,073 + +0.4
1,709,074 - -0.4
1,709,074 - -0.9
1,709,088 + +0.5
1,709,088 + +0.3
1,709,200 - -2.0
1,709,285 + ABZR87_RS08050 0.12 -1.0
1,709,285 + ABZR87_RS08050 0.12 -0.6
1,709,285 + ABZR87_RS08050 0.12 -0.8
1,709,285 + ABZR87_RS08050 0.12 -0.1
1,709,285 + ABZR87_RS08050 0.12 -0.6
1,709,286 - ABZR87_RS08050 0.12 -0.2
1,709,286 - ABZR87_RS08050 0.12 -1.5
1,709,286 - ABZR87_RS08050 0.12 -0.4
1,709,286 - ABZR87_RS08050 0.12 +0.5
1,709,286 - ABZR87_RS08050 0.12 -0.1
1,709,286 - ABZR87_RS08050 0.12 +0.4
1,709,286 - ABZR87_RS08050 0.12 +0.5
1,709,287 + ABZR87_RS08050 0.12 -2.0
1,709,287 + ABZR87_RS08050 0.12 +0.4
1,709,287 + ABZR87_RS08050 0.12 +1.0
1,709,287 + ABZR87_RS08050 0.12 -0.1
1,709,287 + ABZR87_RS08050 0.12 +0.0
1,709,287 + ABZR87_RS08050 0.12 -0.3
1,709,288 - ABZR87_RS08050 0.12 -0.2
1,709,288 - ABZR87_RS08050 0.12 -0.5
1,709,288 - ABZR87_RS08050 0.12 -1.4
1,709,288 - ABZR87_RS08050 0.12 -0.3
1,709,288 - ABZR87_RS08050 0.12 -0.4
1,709,393 + ABZR87_RS08050 0.25 -1.7
1,709,393 + ABZR87_RS08050 0.25 -0.3
1,709,393 + ABZR87_RS08050 0.25 -0.3
1,709,394 - ABZR87_RS08050 0.25 +0.1
1,709,394 - ABZR87_RS08050 0.25 -0.1
1,709,639 + ABZR87_RS08050 0.56 -0.0
1,709,639 + ABZR87_RS08050 0.56 +0.3
1,709,639 + ABZR87_RS08050 0.56 -0.5
1,709,639 + ABZR87_RS08050 0.56 -1.0
1,709,640 - ABZR87_RS08050 0.56 -0.3
1,709,640 - ABZR87_RS08050 0.56 -0.1
1,709,640 - ABZR87_RS08050 0.56 -0.8
1,709,642 + ABZR87_RS08050 0.57 -0.3
1,709,642 + ABZR87_RS08050 0.57 -0.1
1,709,642 + ABZR87_RS08050 0.57 -0.2
1,709,643 - ABZR87_RS08050 0.57 +0.1
1,709,643 - ABZR87_RS08050 0.57 -1.5
1,709,643 - ABZR87_RS08050 0.57 -0.8
1,709,643 - ABZR87_RS08050 0.57 -1.0
1,709,643 - ABZR87_RS08050 0.57 -1.5
1,710,229 + ABZR87_RS08055 0.76 +0.3
1,710,229 + ABZR87_RS08055 0.76 +0.2
1,710,229 + ABZR87_RS08055 0.76 -0.2
1,710,229 + ABZR87_RS08055 0.76 -0.5
1,710,229 + ABZR87_RS08055 0.76 -0.3
1,710,229 + ABZR87_RS08055 0.76 +0.2
1,710,229 + ABZR87_RS08055 0.76 -0.4
1,710,230 - ABZR87_RS08055 0.76 -0.3
1,710,230 - ABZR87_RS08055 0.76 -0.8
1,710,230 - ABZR87_RS08055 0.76 -0.9
1,710,230 - ABZR87_RS08055 0.76 -0.6
1,710,354 + -0.6
1,710,354 + -0.4
1,710,381 + +0.5
1,710,381 + +0.0
1,710,382 - -1.2
1,710,382 - -0.1
1,710,382 - +0.0
1,710,531 + ABZR87_RS08060 0.25 +0.1
1,710,531 + ABZR87_RS08060 0.25 +0.3
1,710,573 + ABZR87_RS08060 0.29 +0.1
1,710,573 + ABZR87_RS08060 0.29 -0.5
1,710,573 + ABZR87_RS08060 0.29 +0.2
1,710,573 + ABZR87_RS08060 0.29 -0.0
1,710,573 + ABZR87_RS08060 0.29 -0.3
1,710,573 + ABZR87_RS08060 0.29 +0.2
1,710,573 + ABZR87_RS08060 0.29 +0.7
1,710,573 + ABZR87_RS08060 0.29 -2.1
1,710,573 + ABZR87_RS08060 0.29 -0.0
1,710,573 + ABZR87_RS08060 0.29 +0.8
1,710,573 + ABZR87_RS08060 0.29 +0.4
1,710,574 - ABZR87_RS08060 0.30 +0.4
1,710,574 - ABZR87_RS08060 0.30 +0.0
1,710,574 - ABZR87_RS08060 0.30 +0.0
1,710,574 - ABZR87_RS08060 0.30 -0.2
1,710,795 + ABZR87_RS08060 0.54 +0.8
1,710,795 + ABZR87_RS08060 0.54 +0.1
1,710,796 - ABZR87_RS08060 0.54 -0.3
1,710,796 - ABZR87_RS08060 0.54 -0.4
1,710,882 + ABZR87_RS08060 0.64 +1.4
1,710,882 + ABZR87_RS08060 0.64 -0.1
1,710,882 + ABZR87_RS08060 0.64 +0.3
1,710,883 - ABZR87_RS08060 0.64 +0.1

Or see this region's nucleotide sequence