Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05485

Experiment: Protocatechuic Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Protocatechuic Acid (C)
1,164,346	+		ABZR87_RS05480	0.24	+0.5
1,164,346	+		ABZR87_RS05480	0.24	+0.4
1,164,347	-		ABZR87_RS05480	0.24	-0.3
1,164,347	-		ABZR87_RS05480	0.24	+0.3
1,164,347	-		ABZR87_RS05480	0.24	+0.0
1,164,347	-		ABZR87_RS05480	0.24	-0.1
1,164,799	+		ABZR87_RS05480	0.72	-0.3
1,164,799	+		ABZR87_RS05480	0.72	-0.6
1,164,799	+		ABZR87_RS05480	0.72	+0.9
1,164,799	+		ABZR87_RS05480	0.72	+0.7
1,164,799	+		ABZR87_RS05480	0.72	+0.2
1,164,799	+		ABZR87_RS05480	0.72	+0.5
1,164,799	+		ABZR87_RS05480	0.72	-0.5
1,164,799	+		ABZR87_RS05480	0.72	-0.2
1,164,800	-		ABZR87_RS05480	0.73	+0.6
1,164,800	-		ABZR87_RS05480	0.73	+0.0
1,164,800	-		ABZR87_RS05480	0.73	-2.5
1,164,880	+		ABZR87_RS05480	0.81	-0.4
1,164,880	+		ABZR87_RS05480	0.81	-0.6
1,164,881	-		ABZR87_RS05480	0.81	-0.2
1,164,881	-		ABZR87_RS05480	0.81	-0.6
1,164,881	-		ABZR87_RS05480	0.81	-0.1
1,164,937	+		ABZR87_RS05480	0.87	+0.4
1,165,105	+				+0.5
1,165,105	+				+0.1
1,165,109	+				+0.9
1,165,109	+				-0.1
1,165,109	+				-0.3
1,165,109	+				+0.4
1,165,110	-				-0.3
1,165,110	-				+0.8
1,165,110	-				+0.1
1,165,312	+				+0.0
1,165,312	+				+0.3
1,165,313	-				-1.2
1,165,313	-				-0.6
1,165,341	-				+0.9
1,165,341	-				-0.0
1,165,348	+				+0.8
1,165,348	+				-0.8
1,165,348	+				-0.3
1,165,348	+				-0.9
1,165,349	-				+0.4
1,165,349	-				-0.4
1,165,349	-				+0.3
1,165,486	+		ABZR87_RS05485	0.18	+1.0
1,165,486	+		ABZR87_RS05485	0.18	-0.3
1,165,486	+		ABZR87_RS05485	0.18	+0.5
1,165,486	+		ABZR87_RS05485	0.18	-0.9
1,165,486	+		ABZR87_RS05485	0.18	-1.1
1,165,486	+		ABZR87_RS05485	0.18	+0.3
1,165,486	+		ABZR87_RS05485	0.18	+0.8
1,165,486	+		ABZR87_RS05485	0.18	+0.2
1,165,487	-		ABZR87_RS05485	0.18	-0.5
1,165,487	-		ABZR87_RS05485	0.18	+0.1
1,165,487	-		ABZR87_RS05485	0.18	-0.3
1,165,487	-		ABZR87_RS05485	0.18	+0.3
1,165,487	-		ABZR87_RS05485	0.18	-0.2
1,165,487	-		ABZR87_RS05485	0.18	+0.2
1,165,519	+		ABZR87_RS05485	0.20	-0.8
1,165,519	+		ABZR87_RS05485	0.20	+0.2
1,165,520	-		ABZR87_RS05485	0.20	+0.4
1,165,520	-		ABZR87_RS05485	0.20	+0.3
1,165,520	-		ABZR87_RS05485	0.20	-0.4
1,165,520	-		ABZR87_RS05485	0.20	+0.2
1,165,588	+		ABZR87_RS05485	0.24	-0.8
1,165,588	+		ABZR87_RS05485	0.24	-0.1
1,165,588	+		ABZR87_RS05485	0.24	+0.3
1,165,589	-		ABZR87_RS05485	0.24	+0.4
1,165,589	-		ABZR87_RS05485	0.24	+0.4
1,165,589	-		ABZR87_RS05485	0.24	+0.2
1,165,589	-		ABZR87_RS05485	0.24	+0.2
1,165,589	-		ABZR87_RS05485	0.24	-1.2
1,165,624	+		ABZR87_RS05485	0.27	+0.2
1,165,624	+		ABZR87_RS05485	0.27	+0.3
1,165,624	+		ABZR87_RS05485	0.27	+0.1
1,165,624	+		ABZR87_RS05485	0.27	+0.1
1,165,624	+		ABZR87_RS05485	0.27	-0.2
1,165,624	+		ABZR87_RS05485	0.27	+0.2
1,165,624	+		ABZR87_RS05485	0.27	+0.6
1,165,624	+		ABZR87_RS05485	0.27	-0.3
1,165,624	+		ABZR87_RS05485	0.27	+0.6
1,165,625	-		ABZR87_RS05485	0.27	-0.3
1,165,625	-		ABZR87_RS05485	0.27	-0.7
1,165,625	-		ABZR87_RS05485	0.27	+0.7
1,165,625	-		ABZR87_RS05485	0.27	-0.0
1,165,625	-		ABZR87_RS05485	0.27	-0.3
1,165,631	-		ABZR87_RS05485	0.27	+0.0
1,165,631	-		ABZR87_RS05485	0.27	-0.9
1,165,631	-		ABZR87_RS05485	0.27	-0.7
1,165,777	+		ABZR87_RS05485	0.37	+0.3
1,165,778	-		ABZR87_RS05485	0.37	-0.1
1,165,813	+		ABZR87_RS05485	0.39	-0.1
1,165,814	-		ABZR87_RS05485	0.39	+0.9
1,165,814	-		ABZR87_RS05485	0.39	-0.0
1,165,951	+		ABZR87_RS05485	0.48	+0.8
1,165,951	+		ABZR87_RS05485	0.48	-0.9
1,165,952	-		ABZR87_RS05485	0.48	+0.9
1,165,952	-		ABZR87_RS05485	0.48	-0.5
1,165,952	-		ABZR87_RS05485	0.48	+0.1
1,166,003	+		ABZR87_RS05485	0.51	+0.2
1,166,056	+		ABZR87_RS05485	0.55	-0.7
1,166,057	-		ABZR87_RS05485	0.55	+1.3
1,166,057	-		ABZR87_RS05485	0.55	-0.3
1,166,112	+		ABZR87_RS05485	0.58	-0.4
1,166,112	+		ABZR87_RS05485	0.58	-0.0
1,166,112	+		ABZR87_RS05485	0.58	-0.5
1,166,159	+		ABZR87_RS05485	0.62	-0.1
1,166,234	-		ABZR87_RS05485	0.66	-0.2
1,166,323	+		ABZR87_RS05485	0.72	+0.2
1,166,324	-		ABZR87_RS05485	0.72	-0.0
1,166,324	-		ABZR87_RS05485	0.72	+0.5
1,166,459	-		ABZR87_RS05485	0.81	+0.7
1,166,570	+		ABZR87_RS05485	0.88	-0.4
1,166,700	+				+0.4
1,166,700	+				+0.6
1,166,700	+				-0.4
1,166,700	+				-0.2
1,166,701	-				+0.1
1,166,701	-				+0.6
1,166,701	-				+0.5
1,166,806	+				-0.0
1,166,806	+				+0.2
1,166,806	+				-0.2
1,166,806	+				-1.6
1,166,806	+				+0.6
1,166,806	+				-0.5
1,166,806	+				+0.2
1,166,806	+				-0.2
1,166,806	+				+0.2
1,166,807	-				-0.7
1,166,807	-				-0.2
1,166,807	-				+1.0
1,166,807	-				+0.5
1,166,807	-				-0.9
1,166,807	-				+0.7
1,166,810	+				+0.2
1,166,810	+				+0.0
1,166,811	-				-0.4
1,166,811	-				-0.0
1,166,811	-				+0.3
1,166,811	-				-0.4
1,166,831	-				+1.0
1,166,831	-				-0.3
1,166,831	-				-0.1
1,166,831	-				-0.7
1,166,881	+				+0.3
1,166,882	-				-0.2
1,166,888	-				+0.1
1,166,888	-				-0.8
1,166,888	-				+0.2
1,166,888	-				-1.3
1,166,888	-				+0.2
1,166,888	-				+0.0
1,166,909	-				-0.7
1,166,936	+				+0.1
1,166,937	-				-0.3
1,166,937	-				+0.4
1,167,038	+		ABZR87_RS05490	0.14	+0.3
1,167,039	-		ABZR87_RS05490	0.15	-0.2
1,167,095	+		ABZR87_RS05490	0.25	-0.2
1,167,095	+		ABZR87_RS05490	0.25	-0.3
1,167,095	+		ABZR87_RS05490	0.25	+0.4
1,167,095	+		ABZR87_RS05490	0.25	+0.9
1,167,095	+		ABZR87_RS05490	0.25	-0.4
1,167,096	-		ABZR87_RS05490	0.25	+0.2
1,167,096	-		ABZR87_RS05490	0.25	-1.3
1,167,096	-		ABZR87_RS05490	0.25	-1.5
1,167,096	-		ABZR87_RS05490	0.25	+0.7
1,167,167	+		ABZR87_RS05490	0.38	-0.4
1,167,168	-		ABZR87_RS05490	0.38	+0.5
1,167,244	+		ABZR87_RS05490	0.52	-0.3
1,167,245	-		ABZR87_RS05490	0.52	-0.8
1,167,266	+		ABZR87_RS05490	0.56	-0.4
1,167,266	+		ABZR87_RS05490	0.56	-0.6
1,167,267	-		ABZR87_RS05490	0.57	+0.5
1,167,267	-		ABZR87_RS05490	0.57	+0.7
1,167,267	-		ABZR87_RS05490	0.57	-0.0
1,167,267	-		ABZR87_RS05490	0.57	-0.2
1,167,398	+		ABZR87_RS05490	0.81	-0.1
1,167,398	+		ABZR87_RS05490	0.81	+0.5
1,167,399	-		ABZR87_RS05490	0.81	+0.3
1,167,422	+		ABZR87_RS05490	0.85	-0.2
1,167,422	+		ABZR87_RS05490	0.85	+1.5
1,167,423	-		ABZR87_RS05490	0.85	+0.3
1,167,423	-		ABZR87_RS05490	0.85	-0.1
1,167,500	+				-0.4
1,167,500	+				+0.1
1,167,508	+				-0.4
1,167,509	-				-0.8
1,167,509	-				+0.5
1,167,522	-				+0.5
1,167,545	+				+0.6
1,167,546	-				+0.4
1,167,546	-				+0.2
1,167,559	+				-0.5
1,167,560	-				+0.6
1,167,578	-				-0.0
1,167,593	-				+0.6
1,167,593	-				-0.2