Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04880

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04870 and ABZR87_RS04875 are separated by 4 nucleotidesABZR87_RS04875 and ABZR87_RS04880 are separated by 17 nucleotidesABZR87_RS04880 and ABZR87_RS04885 are separated by 43 nucleotides ABZR87_RS04870: ABZR87_RS04870 - TfoX/Sxy family protein, at 1,022,271 to 1,022,729 _RS04870 ABZR87_RS04875: ABZR87_RS04875 - pyridoxamine 5'-phosphate oxidase family protein, at 1,022,734 to 1,023,348 _RS04875 ABZR87_RS04880: ABZR87_RS04880 - 5-formyltetrahydrofolate cyclo-ligase, at 1,023,366 to 1,023,971 _RS04880 ABZR87_RS04885: ABZR87_RS04885 - lytic transglycosylase domain-containing protein, at 1,024,015 to 1,025,967 _RS04885 Position (kb) 1023 1024Strain fitness (log2 ratio) -1 0 1 2at 1022.382 kb on + strand, within ABZR87_RS04870at 1022.382 kb on + strand, within ABZR87_RS04870at 1022.386 kb on - strand, within ABZR87_RS04870at 1022.386 kb on - strand, within ABZR87_RS04870at 1022.427 kb on + strand, within ABZR87_RS04870at 1022.427 kb on + strand, within ABZR87_RS04870at 1022.427 kb on + strand, within ABZR87_RS04870at 1022.427 kb on + strand, within ABZR87_RS04870at 1022.427 kb on + strand, within ABZR87_RS04870at 1022.427 kb on + strand, within ABZR87_RS04870at 1022.428 kb on - strand, within ABZR87_RS04870at 1022.428 kb on - strand, within ABZR87_RS04870at 1022.428 kb on - strand, within ABZR87_RS04870at 1022.491 kb on - strand, within ABZR87_RS04870at 1022.491 kb on - strand, within ABZR87_RS04870at 1022.491 kb on - strand, within ABZR87_RS04870at 1022.526 kb on + strand, within ABZR87_RS04870at 1022.527 kb on - strand, within ABZR87_RS04870at 1022.527 kb on - strand, within ABZR87_RS04870at 1022.527 kb on - strand, within ABZR87_RS04870at 1022.527 kb on - strand, within ABZR87_RS04870at 1022.666 kb on + strand, within ABZR87_RS04870at 1022.666 kb on + strand, within ABZR87_RS04870at 1022.667 kb on - strand, within ABZR87_RS04870at 1022.667 kb on - strand, within ABZR87_RS04870at 1022.738 kb on + strandat 1022.738 kb on + strandat 1022.739 kb on - strandat 1022.739 kb on - strandat 1022.777 kb on + strandat 1022.777 kb on + strandat 1022.777 kb on + strandat 1022.778 kb on - strandat 1022.796 kb on + strand, within ABZR87_RS04875at 1022.797 kb on - strand, within ABZR87_RS04875at 1022.797 kb on - strand, within ABZR87_RS04875at 1022.797 kb on - strand, within ABZR87_RS04875at 1022.797 kb on - strand, within ABZR87_RS04875at 1022.797 kb on - strand, within ABZR87_RS04875at 1022.909 kb on + strand, within ABZR87_RS04875at 1022.909 kb on + strand, within ABZR87_RS04875at 1022.910 kb on - strand, within ABZR87_RS04875at 1022.910 kb on - strand, within ABZR87_RS04875at 1022.910 kb on - strand, within ABZR87_RS04875at 1022.927 kb on - strand, within ABZR87_RS04875at 1023.078 kb on + strand, within ABZR87_RS04875at 1023.079 kb on - strand, within ABZR87_RS04875at 1023.306 kb on - strandat 1023.306 kb on - strandat 1023.451 kb on + strand, within ABZR87_RS04880at 1023.451 kb on + strand, within ABZR87_RS04880at 1023.451 kb on + strand, within ABZR87_RS04880at 1023.451 kb on + strand, within ABZR87_RS04880at 1023.451 kb on + strand, within ABZR87_RS04880at 1023.451 kb on + strand, within ABZR87_RS04880at 1023.451 kb on + strand, within ABZR87_RS04880at 1023.451 kb on + strand, within ABZR87_RS04880at 1023.452 kb on - strand, within ABZR87_RS04880at 1023.452 kb on - strand, within ABZR87_RS04880at 1023.452 kb on - strand, within ABZR87_RS04880at 1023.452 kb on - strand, within ABZR87_RS04880at 1023.452 kb on - strand, within ABZR87_RS04880at 1023.452 kb on - strand, within ABZR87_RS04880at 1023.514 kb on + strand, within ABZR87_RS04880at 1023.514 kb on + strand, within ABZR87_RS04880at 1023.515 kb on - strand, within ABZR87_RS04880at 1023.515 kb on - strand, within ABZR87_RS04880at 1023.515 kb on - strand, within ABZR87_RS04880at 1023.515 kb on - strand, within ABZR87_RS04880at 1023.529 kb on + strand, within ABZR87_RS04880at 1023.625 kb on + strand, within ABZR87_RS04880at 1023.625 kb on + strand, within ABZR87_RS04880at 1023.626 kb on - strand, within ABZR87_RS04880at 1023.626 kb on - strand, within ABZR87_RS04880at 1023.626 kb on - strand, within ABZR87_RS04880at 1023.626 kb on - strand, within ABZR87_RS04880at 1023.696 kb on + strand, within ABZR87_RS04880at 1023.697 kb on - strand, within ABZR87_RS04880at 1023.697 kb on - strand, within ABZR87_RS04880at 1023.976 kb on + strandat 1023.977 kb on - strandat 1023.990 kb on + strandat 1023.990 kb on + strandat 1023.990 kb on + strandat 1023.990 kb on + strandat 1023.990 kb on + strandat 1023.991 kb on - strandat 1023.991 kb on - strandat 1023.991 kb on - strandat 1023.991 kb on - strandat 1023.991 kb on - strandat 1024.037 kb on + strandat 1024.037 kb on + strandat 1024.037 kb on + strandat 1024.037 kb on + strandat 1024.037 kb on + strandat 1024.037 kb on + strandat 1024.037 kb on + strandat 1024.037 kb on + strandat 1024.037 kb on + strandat 1024.037 kb on + strandat 1024.037 kb on + strandat 1024.037 kb on + strandat 1024.038 kb on - strandat 1024.038 kb on - strandat 1024.038 kb on - strandat 1024.038 kb on - strandat 1024.038 kb on - strandat 1024.038 kb on - strandat 1024.038 kb on - strandat 1024.038 kb on - strandat 1024.040 kb on + strandat 1024.040 kb on - strandat 1024.040 kb on - strandat 1024.040 kb on - strandat 1024.238 kb on - strand, within ABZR87_RS04885at 1024.252 kb on + strand, within ABZR87_RS04885at 1024.252 kb on + strand, within ABZR87_RS04885at 1024.252 kb on + strand, within ABZR87_RS04885at 1024.252 kb on + strand, within ABZR87_RS04885at 1024.252 kb on + strand, within ABZR87_RS04885at 1024.252 kb on + strand, within ABZR87_RS04885at 1024.252 kb on + strand, within ABZR87_RS04885at 1024.253 kb on - strand, within ABZR87_RS04885at 1024.253 kb on - strand, within ABZR87_RS04885at 1024.253 kb on - strand, within ABZR87_RS04885at 1024.253 kb on - strand, within ABZR87_RS04885at 1024.253 kb on - strand, within ABZR87_RS04885at 1024.262 kb on - strand, within ABZR87_RS04885at 1024.262 kb on - strand, within ABZR87_RS04885at 1024.308 kb on + strand, within ABZR87_RS04885at 1024.351 kb on + strand, within ABZR87_RS04885at 1024.352 kb on - strand, within ABZR87_RS04885at 1024.352 kb on - strand, within ABZR87_RS04885at 1024.352 kb on - strand, within ABZR87_RS04885at 1024.352 kb on - strand, within ABZR87_RS04885at 1024.352 kb on - strand, within ABZR87_RS04885at 1024.353 kb on + strand, within ABZR87_RS04885at 1024.353 kb on + strand, within ABZR87_RS04885at 1024.353 kb on + strand, within ABZR87_RS04885at 1024.353 kb on + strand, within ABZR87_RS04885at 1024.353 kb on + strand, within ABZR87_RS04885at 1024.354 kb on - strand, within ABZR87_RS04885at 1024.354 kb on - strand, within ABZR87_RS04885at 1024.354 kb on - strand, within ABZR87_RS04885at 1024.354 kb on - strand, within ABZR87_RS04885at 1024.483 kb on + strand, within ABZR87_RS04885at 1024.483 kb on + strand, within ABZR87_RS04885at 1024.483 kb on + strand, within ABZR87_RS04885at 1024.483 kb on + strand, within ABZR87_RS04885at 1024.484 kb on - strand, within ABZR87_RS04885at 1024.484 kb on - strand, within ABZR87_RS04885at 1024.484 kb on - strand, within ABZR87_RS04885at 1024.484 kb on - strand, within ABZR87_RS04885at 1024.484 kb on - strand, within ABZR87_RS04885at 1024.484 kb on - strand, within ABZR87_RS04885at 1024.484 kb on - strand, within ABZR87_RS04885at 1024.561 kb on + strand, within ABZR87_RS04885at 1024.561 kb on + strand, within ABZR87_RS04885at 1024.562 kb on - strand, within ABZR87_RS04885at 1024.591 kb on + strand, within ABZR87_RS04885at 1024.591 kb on + strand, within ABZR87_RS04885at 1024.592 kb on - strand, within ABZR87_RS04885at 1024.780 kb on + strand, within ABZR87_RS04885at 1024.780 kb on + strand, within ABZR87_RS04885at 1024.781 kb on - strand, within ABZR87_RS04885at 1024.888 kb on + strand, within ABZR87_RS04885at 1024.889 kb on - strand, within ABZR87_RS04885at 1024.921 kb on + strand, within ABZR87_RS04885at 1024.922 kb on - strand, within ABZR87_RS04885at 1024.922 kb on - strand, within ABZR87_RS04885

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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1,022,382 + ABZR87_RS04870 0.24 +0.5
1,022,382 + ABZR87_RS04870 0.24 -0.4
1,022,386 - ABZR87_RS04870 0.25 +0.3
1,022,386 - ABZR87_RS04870 0.25 -0.2
1,022,427 + ABZR87_RS04870 0.34 +0.0
1,022,427 + ABZR87_RS04870 0.34 -0.1
1,022,427 + ABZR87_RS04870 0.34 -0.2
1,022,427 + ABZR87_RS04870 0.34 +0.2
1,022,427 + ABZR87_RS04870 0.34 +0.1
1,022,427 + ABZR87_RS04870 0.34 -0.7
1,022,428 - ABZR87_RS04870 0.34 -0.3
1,022,428 - ABZR87_RS04870 0.34 -0.4
1,022,428 - ABZR87_RS04870 0.34 -0.8
1,022,491 - ABZR87_RS04870 0.48 -0.2
1,022,491 - ABZR87_RS04870 0.48 +0.6
1,022,491 - ABZR87_RS04870 0.48 -1.0
1,022,526 + ABZR87_RS04870 0.56 -0.2
1,022,527 - ABZR87_RS04870 0.56 -1.7
1,022,527 - ABZR87_RS04870 0.56 +0.3
1,022,527 - ABZR87_RS04870 0.56 +1.1
1,022,527 - ABZR87_RS04870 0.56 +0.4
1,022,666 + ABZR87_RS04870 0.86 +0.3
1,022,666 + ABZR87_RS04870 0.86 -1.4
1,022,667 - ABZR87_RS04870 0.86 +0.1
1,022,667 - ABZR87_RS04870 0.86 -0.4
1,022,738 + -0.0
1,022,738 + +0.4
1,022,739 - +1.0
1,022,739 - +1.2
1,022,777 + -0.3
1,022,777 + -0.7
1,022,777 + -0.0
1,022,778 - +1.3
1,022,796 + ABZR87_RS04875 0.10 +0.2
1,022,797 - ABZR87_RS04875 0.10 -0.0
1,022,797 - ABZR87_RS04875 0.10 +0.7
1,022,797 - ABZR87_RS04875 0.10 +1.2
1,022,797 - ABZR87_RS04875 0.10 +0.2
1,022,797 - ABZR87_RS04875 0.10 -0.1
1,022,909 + ABZR87_RS04875 0.28 -0.2
1,022,909 + ABZR87_RS04875 0.28 +0.4
1,022,910 - ABZR87_RS04875 0.29 -0.2
1,022,910 - ABZR87_RS04875 0.29 -0.1
1,022,910 - ABZR87_RS04875 0.29 +0.0
1,022,927 - ABZR87_RS04875 0.31 +0.2
1,023,078 + ABZR87_RS04875 0.56 +0.7
1,023,079 - ABZR87_RS04875 0.56 -0.9
1,023,306 - +0.3
1,023,306 - +0.8
1,023,451 + ABZR87_RS04880 0.14 -0.0
1,023,451 + ABZR87_RS04880 0.14 +0.3
1,023,451 + ABZR87_RS04880 0.14 +0.4
1,023,451 + ABZR87_RS04880 0.14 -1.3
1,023,451 + ABZR87_RS04880 0.14 +0.6
1,023,451 + ABZR87_RS04880 0.14 +0.1
1,023,451 + ABZR87_RS04880 0.14 +0.4
1,023,451 + ABZR87_RS04880 0.14 -0.5
1,023,452 - ABZR87_RS04880 0.14 +0.3
1,023,452 - ABZR87_RS04880 0.14 -0.5
1,023,452 - ABZR87_RS04880 0.14 -0.5
1,023,452 - ABZR87_RS04880 0.14 +0.9
1,023,452 - ABZR87_RS04880 0.14 -0.2
1,023,452 - ABZR87_RS04880 0.14 -0.5
1,023,514 + ABZR87_RS04880 0.24 +0.9
1,023,514 + ABZR87_RS04880 0.24 +0.6
1,023,515 - ABZR87_RS04880 0.25 -0.3
1,023,515 - ABZR87_RS04880 0.25 +0.4
1,023,515 - ABZR87_RS04880 0.25 -0.0
1,023,515 - ABZR87_RS04880 0.25 +0.0
1,023,529 + ABZR87_RS04880 0.27 +0.4
1,023,625 + ABZR87_RS04880 0.43 +0.5
1,023,625 + ABZR87_RS04880 0.43 +0.9
1,023,626 - ABZR87_RS04880 0.43 +0.7
1,023,626 - ABZR87_RS04880 0.43 +0.8
1,023,626 - ABZR87_RS04880 0.43 +0.7
1,023,626 - ABZR87_RS04880 0.43 +0.2
1,023,696 + ABZR87_RS04880 0.54 -1.0
1,023,697 - ABZR87_RS04880 0.55 -0.3
1,023,697 - ABZR87_RS04880 0.55 -0.1
1,023,976 + -1.2
1,023,977 - +1.0
1,023,990 + -0.0
1,023,990 + +0.6
1,023,990 + +0.1
1,023,990 + -0.6
1,023,990 + -1.1
1,023,991 - +0.2
1,023,991 - +1.3
1,023,991 - +0.2
1,023,991 - +0.7
1,023,991 - +1.4
1,024,037 + +0.9
1,024,037 + -0.1
1,024,037 + +0.5
1,024,037 + +0.4
1,024,037 + +0.1
1,024,037 + -0.0
1,024,037 + -0.8
1,024,037 + +0.4
1,024,037 + +1.1
1,024,037 + -0.4
1,024,037 + -0.1
1,024,037 + +0.3
1,024,038 - +0.4
1,024,038 - -1.4
1,024,038 - +0.6
1,024,038 - -0.1
1,024,038 - +0.2
1,024,038 - -0.0
1,024,038 - +0.3
1,024,038 - -0.4
1,024,040 + +1.0
1,024,040 - -0.1
1,024,040 - -0.2
1,024,040 - -0.6
1,024,238 - ABZR87_RS04885 0.11 +0.5
1,024,252 + ABZR87_RS04885 0.12 -0.5
1,024,252 + ABZR87_RS04885 0.12 -0.4
1,024,252 + ABZR87_RS04885 0.12 -0.8
1,024,252 + ABZR87_RS04885 0.12 +0.4
1,024,252 + ABZR87_RS04885 0.12 +0.2
1,024,252 + ABZR87_RS04885 0.12 -0.1
1,024,252 + ABZR87_RS04885 0.12 +0.3
1,024,253 - ABZR87_RS04885 0.12 +0.2
1,024,253 - ABZR87_RS04885 0.12 +0.5
1,024,253 - ABZR87_RS04885 0.12 +0.1
1,024,253 - ABZR87_RS04885 0.12 -0.7
1,024,253 - ABZR87_RS04885 0.12 -0.6
1,024,262 - ABZR87_RS04885 0.13 +0.3
1,024,262 - ABZR87_RS04885 0.13 -0.3
1,024,308 + ABZR87_RS04885 0.15 +0.3
1,024,351 + ABZR87_RS04885 0.17 +1.5
1,024,352 - ABZR87_RS04885 0.17 -0.1
1,024,352 - ABZR87_RS04885 0.17 +1.3
1,024,352 - ABZR87_RS04885 0.17 +0.0
1,024,352 - ABZR87_RS04885 0.17 +2.2
1,024,352 - ABZR87_RS04885 0.17 -1.0
1,024,353 + ABZR87_RS04885 0.17 -1.0
1,024,353 + ABZR87_RS04885 0.17 -0.5
1,024,353 + ABZR87_RS04885 0.17 -0.4
1,024,353 + ABZR87_RS04885 0.17 +0.1
1,024,353 + ABZR87_RS04885 0.17 +0.0
1,024,354 - ABZR87_RS04885 0.17 +0.4
1,024,354 - ABZR87_RS04885 0.17 -0.6
1,024,354 - ABZR87_RS04885 0.17 -1.0
1,024,354 - ABZR87_RS04885 0.17 +0.5
1,024,483 + ABZR87_RS04885 0.24 +0.4
1,024,483 + ABZR87_RS04885 0.24 -0.5
1,024,483 + ABZR87_RS04885 0.24 -0.7
1,024,483 + ABZR87_RS04885 0.24 +1.0
1,024,484 - ABZR87_RS04885 0.24 +1.4
1,024,484 - ABZR87_RS04885 0.24 -0.6
1,024,484 - ABZR87_RS04885 0.24 -0.2
1,024,484 - ABZR87_RS04885 0.24 +0.1
1,024,484 - ABZR87_RS04885 0.24 -0.9
1,024,484 - ABZR87_RS04885 0.24 -0.1
1,024,484 - ABZR87_RS04885 0.24 +0.1
1,024,561 + ABZR87_RS04885 0.28 -0.7
1,024,561 + ABZR87_RS04885 0.28 +0.1
1,024,562 - ABZR87_RS04885 0.28 +1.2
1,024,591 + ABZR87_RS04885 0.29 +2.0
1,024,591 + ABZR87_RS04885 0.29 +0.7
1,024,592 - ABZR87_RS04885 0.30 +0.4
1,024,780 + ABZR87_RS04885 0.39 -0.6
1,024,780 + ABZR87_RS04885 0.39 +0.0
1,024,781 - ABZR87_RS04885 0.39 +0.3
1,024,888 + ABZR87_RS04885 0.45 -0.0
1,024,889 - ABZR87_RS04885 0.45 +1.5
1,024,921 + ABZR87_RS04885 0.46 -0.6
1,024,922 - ABZR87_RS04885 0.46 +1.6
1,024,922 - ABZR87_RS04885 0.46 +0.8

Or see this region's nucleotide sequence