Strain Fitness in Shewanella loihica PV-4 around Shew_1847

Experiment: Polymyxin B sulfate 20 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1845 and Shew_1846 are separated by 101 nucleotidesShew_1846 and Shew_1847 overlap by 4 nucleotidesShew_1847 and Shew_1848 are separated by 243 nucleotides Shew_1845: Shew_1845 - lysine exporter protein LysE/YggA (RefSeq), at 2,121,305 to 2,121,949 _1845 Shew_1846: Shew_1846 - redoxin domain-containing protein (RefSeq), at 2,122,051 to 2,122,521 _1846 Shew_1847: Shew_1847 - amino acid-binding ACT domain-containing protein (RefSeq), at 2,122,518 to 2,123,072 _1847 Shew_1848: Shew_1848 - dihydrodipicolinate synthase (RefSeq), at 2,123,316 to 2,124,200 _1848 Position (kb) 2122 2123 2124Strain fitness (log2 ratio) -2 -1 0 1 2at 2121.573 kb on - strand, within Shew_1845at 2121.682 kb on + strand, within Shew_1845at 2121.690 kb on - strand, within Shew_1845at 2121.924 kb on - strandat 2121.935 kb on - strandat 2123.154 kb on - strandat 2123.210 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml
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2,121,573 - Shew_1845 0.42 +0.4
2,121,682 + Shew_1845 0.58 +0.6
2,121,690 - Shew_1845 0.60 +2.5
2,121,924 - -0.0
2,121,935 - -2.4
2,123,154 - +0.6
2,123,210 - +0.9

Or see this region's nucleotide sequence