Strain Fitness in Shewanella loihica PV-4 around Shew_1702

Experiment: Polymyxin B sulfate 20 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Polymyxin B sulfate 20 mg/ml
1,957,054	+				+0.2
1,957,055	+				+1.4
1,957,084	+				+0.2
1,957,084	+				+0.2
1,957,084	+				+0.7
1,957,091	+				+0.6
1,957,092	-				+0.3
1,957,092	-				+0.4
1,957,092	-				+0.2
1,957,092	-				+1.8
1,957,092	-				-0.1
1,957,099	-				-0.1
1,957,099	-				-0.3
1,957,099	-				+0.2
1,957,104	-				-1.1
1,957,104	-				-0.3
1,957,106	-				+0.2
1,957,123	+				+0.5
1,957,131	-				+1.3
1,957,142	-				+1.7
1,957,142	-				-0.3
1,957,146	+				-0.1
1,957,154	-				+0.7
1,957,173	-				-0.9
1,957,202	+				+0.0
1,957,202	+				-1.1
1,957,237	+				-0.7
1,957,314	-				+0.4
1,957,491	+				+0.2
1,957,505	-				-2.3
1,957,518	+				+2.0
1,957,534	-				+1.1
1,957,539	+				-0.7
1,957,540	+				-2.7
1,957,547	-				+1.0
1,957,548	-				-1.6
1,957,596	-				-0.1
1,957,618	-				+1.0
1,957,618	-				+0.5
1,957,618	-				+0.2
1,957,621	+				-0.7
1,957,627	-				-0.1
1,957,629	-				-3.5
1,957,629	-				+0.1
1,957,656	+		Shew_1702	0.18	-2.1
1,957,678	+		Shew_1702	0.25	+0.9
1,957,681	-		Shew_1702	0.26	+0.3
1,957,712	+		Shew_1702	0.36	-0.9
1,957,730	+		Shew_1702	0.42	+0.2
1,957,732	+		Shew_1702	0.42	-0.4
1,957,740	-		Shew_1702	0.45	+1.3
1,957,745	+		Shew_1702	0.47	-0.5
1,957,747	+		Shew_1702	0.47	+0.9
1,957,753	-		Shew_1702	0.49	-0.7
1,957,753	-		Shew_1702	0.49	+0.1
1,957,763	-		Shew_1702	0.53	-1.7
1,957,835	+		Shew_1702	0.76	-0.5
1,957,835	+		Shew_1702	0.76	+1.7
1,957,843	+		Shew_1702	0.79	-3.1
1,957,844	-		Shew_1702	0.79	-2.1
1,957,872	-		Shew_1702	0.88	-0.4
1,957,873	+		Shew_1702	0.89	-0.1
1,957,873	+		Shew_1702	0.89	+0.2
1,957,873	+		Shew_1702	0.89	+1.1
1,957,873	+		Shew_1702	0.89	+0.5
1,957,873	+		Shew_1702	0.89	+0.2
1,957,873	+		Shew_1702	0.89	-1.0
1,957,873	+		Shew_1702	0.89	-0.1
1,957,873	+		Shew_1702	0.89	+0.1
1,957,873	+		Shew_1702	0.89	-0.8
1,957,873	+		Shew_1702	0.89	+0.2
1,957,873	+		Shew_1702	0.89	+0.1
1,957,873	+		Shew_1702	0.89	-0.6
1,957,873	+		Shew_1702	0.89	+0.8
1,957,873	+		Shew_1702	0.89	-0.7
1,957,873	+		Shew_1702	0.89	-0.2
1,957,881	-				+0.0
1,957,881	-				-1.7
1,957,881	-				-1.7
1,957,881	-				+1.3
1,957,881	-				+0.0
1,957,881	-				-0.2
1,957,881	-				+1.1
1,957,881	-				+0.0
1,957,881	-				-0.4
1,957,881	-				-0.0
1,957,881	-				+0.2
1,957,881	-				-0.6
1,957,881	-				-1.5
1,957,881	-				-0.1
1,957,881	-				-0.6
1,957,881	-				-0.7
1,957,881	-				+1.4
1,957,881	-				-0.9
1,957,881	-				-0.1
1,957,881	-				+0.6
1,957,883	+				+0.3
1,957,891	-				-1.7
1,957,891	-				+0.7
1,957,891	-				-1.7
1,957,893	+				+1.4
1,957,896	+				-0.3
1,957,896	+				+0.4
1,957,896	+				+0.6
1,957,896	+				+0.3
1,957,896	+				+0.0
1,957,901	+				-0.4
1,957,901	+				-0.7
1,957,901	+				+0.9
1,957,901	+				-2.1
1,957,901	-				+0.8
1,957,901	+				+0.2
1,957,901	-				-0.7
1,957,901	+				+1.1
1,957,901	+				+1.1
1,957,901	+				-0.2
1,957,901	+				-0.0
1,957,904	-				+1.0
1,957,904	-				-0.3
1,957,904	-				-1.0
1,957,904	-				-0.7
1,957,909	-				-0.7
1,957,909	-				-0.0
1,957,909	-				+0.1
1,957,909	-				+0.8
1,957,909	-				+0.1
1,957,909	-				-0.1
1,957,909	-				-3.3
1,957,909	-				-1.1
1,957,946	+				+0.3
1,957,994	+				-1.7
1,958,002	-				+0.6
1,958,005	+		Shew_1703	0.10	-0.6
1,958,010	+		Shew_1703	0.11	-0.1
1,958,011	+		Shew_1703	0.12	+1.7
1,958,018	+		Shew_1703	0.13	+0.7
1,958,018	+		Shew_1703	0.13	-0.7
1,958,018	+		Shew_1703	0.13	+0.2
1,958,019	-		Shew_1703	0.13	-0.4
1,958,019	-		Shew_1703	0.13	+0.1
1,958,019	-		Shew_1703	0.13	+0.6
1,958,019	-		Shew_1703	0.13	+0.7
1,958,023	+		Shew_1703	0.14	-1.0
1,958,024	-		Shew_1703	0.14	-0.8
1,958,024	-		Shew_1703	0.14	+0.7
1,958,024	+		Shew_1703	0.14	+0.3
1,958,024	-		Shew_1703	0.14	-0.7
1,958,024	+		Shew_1703	0.14	-1.0
1,958,029	+		Shew_1703	0.15	+0.2
1,958,034	-		Shew_1703	0.16	+1.3
1,958,037	-		Shew_1703	0.16	+0.3
1,958,039	+		Shew_1703	0.17	+0.2
1,958,039	+		Shew_1703	0.17	+1.1
1,958,039	+		Shew_1703	0.17	-0.4
1,958,047	-		Shew_1703	0.18	-1.6
1,958,047	-		Shew_1703	0.18	-0.7
1,958,047	-		Shew_1703	0.18	-0.1
1,958,070	+		Shew_1703	0.23	-2.7
1,958,070	+		Shew_1703	0.23	-1.7
1,958,070	+		Shew_1703	0.23	-0.1
1,958,078	-		Shew_1703	0.24	-0.2
1,958,078	-		Shew_1703	0.24	-0.4
1,958,078	-		Shew_1703	0.24	+0.4
1,958,078	-		Shew_1703	0.24	-0.4
1,958,078	-		Shew_1703	0.24	+0.5
1,958,078	-		Shew_1703	0.24	-0.7
1,958,078	-		Shew_1703	0.24	+0.1
1,958,078	-		Shew_1703	0.24	-0.3
1,958,078	-		Shew_1703	0.24	+0.4
1,958,078	-		Shew_1703	0.24	-0.5
1,958,078	-		Shew_1703	0.24	-0.6
1,958,078	-		Shew_1703	0.24	-0.3
1,958,086	+		Shew_1703	0.26	-1.0
1,958,094	-		Shew_1703	0.27	-1.1
1,958,190	+		Shew_1703	0.45	+1.0
1,958,190	+		Shew_1703	0.45	+0.2
1,958,198	-		Shew_1703	0.47	-0.6
1,958,235	+		Shew_1703	0.54	+2.6
1,958,236	+		Shew_1703	0.54	+0.3
1,958,237	+		Shew_1703	0.54	-0.5
1,958,237	+		Shew_1703	0.54	-0.7
1,958,246	-		Shew_1703	0.56	-0.7
1,958,253	+		Shew_1703	0.57	+0.6
1,958,257	+		Shew_1703	0.58	-0.2
1,958,265	-		Shew_1703	0.60	-0.6
1,958,271	-		Shew_1703	0.61	+0.3
1,958,299	+		Shew_1703	0.66	+0.4
1,958,299	+		Shew_1703	0.66	+0.7
1,958,305	+		Shew_1703	0.67	-0.5
1,958,305	+		Shew_1703	0.67	+0.9
1,958,307	-		Shew_1703	0.68	-1.5
1,958,313	-		Shew_1703	0.69	-2.1
1,958,313	-		Shew_1703	0.69	-1.5
1,958,313	-		Shew_1703	0.69	+1.2
1,958,313	-		Shew_1703	0.69	-0.7
1,958,351	+		Shew_1703	0.76	+0.5
1,958,351	+		Shew_1703	0.76	-2.3
1,958,359	-		Shew_1703	0.77	-1.2
1,958,385	-		Shew_1703	0.82	-0.4
1,958,385	-		Shew_1703	0.82	-0.9
1,958,389	+		Shew_1703	0.83	+0.1
1,958,397	-		Shew_1703	0.85	+1.0
1,958,458	-				-0.1
1,958,497	+				+0.1
1,958,497	+				+0.2
1,958,497	+				+0.3
1,958,497	+				+0.5
1,958,546	+				+0.4
1,958,546	+				-0.3
1,958,546	+				+0.3
1,958,546	+				-0.5
1,958,554	-				+0.7
1,958,554	-				-0.7
1,958,554	-				+0.2
1,958,581	-				-0.3
1,958,581	-				-0.1
1,958,622	+				+0.3
1,958,622	+				-0.0
1,958,622	+				+0.1
1,958,622	+				+0.1
1,958,622	+				+0.1
1,958,624	+				+0.0
1,958,637	-				-1.0
1,958,649	-				+0.3
1,958,824	+				-0.6
1,958,824	+				+2.8
1,958,858	+				+0.4
1,958,901	+		Shew_1704	0.17	-1.2
1,958,901	+		Shew_1704	0.17	+0.0
1,958,906	+		Shew_1704	0.18	+0.5
1,958,906	+		Shew_1704	0.18	+0.2