Strain Fitness in Shewanella loihica PV-4 around Shew_1610

Experiment: Polymyxin B sulfate 20 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1608 and Shew_1609 are separated by 23 nucleotidesShew_1609 and Shew_1610 are separated by 93 nucleotidesShew_1610 and sbcB are separated by 117 nucleotides Shew_1608: Shew_1608 - carbohydrate kinase, FGGY (RefSeq), at 1,839,098 to 1,840,681 _1608 Shew_1609: Shew_1609 - 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq), at 1,840,705 to 1,841,580 _1609 Shew_1610: Shew_1610 - cytidine deaminase (RefSeq), at 1,841,674 to 1,842,564 _1610 Shew_1611: sbcB - exonuclease I (RefSeq), at 1,842,682 to 1,844,130 sbcB Position (kb) 1841 1842 1843Strain fitness (log2 ratio) -3 -2 -1 0 1at 1840.675 kb on + strandat 1840.675 kb on + strandat 1840.775 kb on + strandat 1840.789 kb on + strandat 1840.789 kb on + strandat 1840.806 kb on + strand, within Shew_1609at 1841.529 kb on + strandat 1842.294 kb on + strand, within Shew_1610at 1842.340 kb on - strand, within Shew_1610at 1843.108 kb on + strand, within sbcB

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml
remove
1,840,675 + +0.8
1,840,675 + -0.7
1,840,775 + +0.3
1,840,789 + +0.3
1,840,789 + +0.9
1,840,806 + Shew_1609 0.12 -0.2
1,841,529 + +1.3
1,842,294 + Shew_1610 0.70 +0.7
1,842,340 - Shew_1610 0.75 +0.2
1,843,108 + sbcB Shew_1611 0.29 -3.1

Or see this region's nucleotide sequence