Strain Fitness in Shewanella loihica PV-4 around Shew_1554

Experiment: Polymyxin B sulfate 20 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1552 and Shew_1553 are separated by 39 nucleotidesShew_1553 and Shew_1554 are separated by 135 nucleotidesShew_1554 and Shew_1555 are separated by 262 nucleotides Shew_1552: Shew_1552 - MarR family transcriptional regulator (RefSeq), at 1,783,596 to 1,784,012 _1552 Shew_1553: Shew_1553 - hypothetical protein (RefSeq), at 1,784,052 to 1,784,534 _1553 Shew_1554: Shew_1554 - hypothetical protein (RefSeq), at 1,784,670 to 1,785,014 _1554 Shew_1555: Shew_1555 - Glu/Leu/Phe/Val dehydrogenase, dimerisation region (RefSeq), at 1,785,277 to 1,786,308 _1555 Position (kb) 1784 1785 1786Strain fitness (log2 ratio) -2 -1 0 1at 1783.705 kb on - strand, within Shew_1552at 1784.006 kb on + strandat 1784.701 kb on - strandat 1784.870 kb on + strand, within Shew_1554at 1785.040 kb on - strandat 1785.184 kb on - strandat 1785.801 kb on + strand, within Shew_1555at 1785.966 kb on - strand, within Shew_1555

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml
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1,783,705 - Shew_1552 0.26 -0.2
1,784,006 + +0.4
1,784,701 - -0.6
1,784,870 + Shew_1554 0.58 -0.7
1,785,040 - -0.1
1,785,184 - -2.2
1,785,801 + Shew_1555 0.51 +1.2
1,785,966 - Shew_1555 0.67 +0.8

Or see this region's nucleotide sequence