Experiment: Polymyxin B sulfate 20 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0850 and Shew_0851 are separated by 347 nucleotides Shew_0851 and Shew_0852 are separated by 124 nucleotides Shew_0852 and Shew_0853 are separated by 399 nucleotides
Shew_0850: Shew_0850 - hypothetical protein (RefSeq), at 972,890 to 973,717
_0850
Shew_0851: Shew_0851 - phospho-2-dehydro-3-deoxyheptonate aldolase (RefSeq), at 974,065 to 975,117
_0851
Shew_0852: Shew_0852 - hypothetical protein (RefSeq), at 975,242 to 975,418
_0852
Shew_0853: Shew_0853 - ABC transporter-related protein (RefSeq), at 975,818 to 977,593
_0853
Position (kb) 974
975
976 Strain fitness (log2 ratio) -2
-1
0
1 at 973.070 kb on - strand, within Shew_0850 at 973.086 kb on + strand, within Shew_0850 at 973.089 kb on - strand, within Shew_0850 at 973.387 kb on + strand, within Shew_0850 at 973.458 kb on + strand, within Shew_0850 at 973.544 kb on - strand, within Shew_0850 at 973.552 kb on - strand, within Shew_0850 at 973.744 kb on + strand at 973.780 kb on - strand at 973.788 kb on + strand at 973.882 kb on + strand at 974.019 kb on + strand at 974.020 kb on - strand at 974.020 kb on - strand at 974.020 kb on - strand at 974.020 kb on - strand at 974.112 kb on + strand at 974.124 kb on + strand at 974.246 kb on + strand, within Shew_0851 at 974.266 kb on - strand, within Shew_0851 at 974.266 kb on - strand, within Shew_0851 at 974.318 kb on - strand, within Shew_0851 at 974.373 kb on - strand, within Shew_0851 at 974.373 kb on - strand, within Shew_0851 at 974.375 kb on + strand, within Shew_0851 at 974.395 kb on - strand, within Shew_0851 at 974.438 kb on - strand, within Shew_0851 at 974.601 kb on + strand, within Shew_0851 at 974.601 kb on + strand, within Shew_0851 at 974.609 kb on - strand, within Shew_0851 at 974.609 kb on - strand, within Shew_0851 at 974.653 kb on + strand, within Shew_0851 at 974.713 kb on - strand, within Shew_0851 at 974.792 kb on - strand, within Shew_0851 at 974.831 kb on - strand, within Shew_0851 at 974.941 kb on - strand, within Shew_0851 at 975.038 kb on - strand at 975.157 kb on + strand at 975.230 kb on + strand at 975.349 kb on - strand, within Shew_0852 at 975.372 kb on - strand, within Shew_0852 at 975.400 kb on + strand, within Shew_0852 at 975.468 kb on + strand at 975.477 kb on - strand at 975.478 kb on + strand at 975.478 kb on + strand at 975.478 kb on + strand at 975.478 kb on + strand at 975.478 kb on + strand at 975.478 kb on + strand at 975.486 kb on - strand at 975.486 kb on - strand at 975.662 kb on - strand at 975.734 kb on - strand at 975.996 kb on + strand, within Shew_0853 at 976.014 kb on - strand, within Shew_0853 at 976.062 kb on + strand, within Shew_0853 at 976.062 kb on + strand, within Shew_0853 at 976.070 kb on - strand, within Shew_0853 at 976.094 kb on - strand, within Shew_0853
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml remove 973,070 - Shew_0850 0.22 +0.1 973,086 + Shew_0850 0.24 -0.0 973,089 - Shew_0850 0.24 +0.4 973,387 + Shew_0850 0.60 +0.5 973,458 + Shew_0850 0.69 -0.6 973,544 - Shew_0850 0.79 -0.3 973,552 - Shew_0850 0.80 +0.8 973,744 + -0.6 973,780 - -0.3 973,788 + -0.2 973,882 + -0.2 974,019 + -0.7 974,020 - +0.1 974,020 - +1.0 974,020 - +0.8 974,020 - +0.0 974,112 + +0.2 974,124 + +0.0 974,246 + Shew_0851 0.17 +0.1 974,266 - Shew_0851 0.19 +0.5 974,266 - Shew_0851 0.19 -0.4 974,318 - Shew_0851 0.24 +0.4 974,373 - Shew_0851 0.29 -0.2 974,373 - Shew_0851 0.29 -0.3 974,375 + Shew_0851 0.29 -1.0 974,395 - Shew_0851 0.31 +0.4 974,438 - Shew_0851 0.35 +0.4 974,601 + Shew_0851 0.51 +0.1 974,601 + Shew_0851 0.51 +0.2 974,609 - Shew_0851 0.52 -0.9 974,609 - Shew_0851 0.52 +0.5 974,653 + Shew_0851 0.56 +0.2 974,713 - Shew_0851 0.62 +0.2 974,792 - Shew_0851 0.69 -0.2 974,831 - Shew_0851 0.73 -0.5 974,941 - Shew_0851 0.83 -0.2 975,038 - -0.5 975,157 + +0.1 975,230 + -1.0 975,349 - Shew_0852 0.60 +0.4 975,372 - Shew_0852 0.73 +0.1 975,400 + Shew_0852 0.89 -0.0 975,468 + +0.4 975,477 - +0.3 975,478 + +0.7 975,478 + +0.3 975,478 + +0.3 975,478 + +1.7 975,478 + -0.0 975,478 + -0.5 975,486 - -1.9 975,486 - -0.9 975,662 - +0.3 975,734 - +0.1 975,996 + Shew_0853 0.10 +0.5 976,014 - Shew_0853 0.11 +1.2 976,062 + Shew_0853 0.14 +0.5 976,062 + Shew_0853 0.14 +0.5 976,070 - Shew_0853 0.14 +0.2 976,094 - Shew_0853 0.16 +1.2
Or see this region's nucleotide sequence