Experiment: Polymyxin B sulfate 20 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0837 and Shew_0838 are separated by 64 nucleotides Shew_0838 and Shew_0839 are separated by 13 nucleotides Shew_0839 and Shew_0840 are separated by 179 nucleotides
Shew_0837: Shew_0837 - TPR repeat-containing protein (RefSeq), at 960,198 to 961,607
_0837
Shew_0838: Shew_0838 - SlyX family protein (RefSeq), at 961,672 to 961,884
_0838
Shew_0839: Shew_0839 - WD-40 repeat-containing protein (RefSeq), at 961,898 to 962,866
_0839
Shew_0840: Shew_0840 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 963,046 to 963,813
_0840
Position (kb) 961
962
963 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 961.199 kb on - strand, within Shew_0837 at 961.911 kb on + strand at 962.539 kb on - strand, within Shew_0839 at 962.692 kb on + strand, within Shew_0839 at 962.785 kb on + strand at 962.793 kb on - strand at 962.986 kb on - strand at 963.010 kb on - strand at 963.048 kb on - strand at 963.146 kb on - strand, within Shew_0840 at 963.288 kb on - strand, within Shew_0840 at 963.335 kb on + strand, within Shew_0840 at 963.693 kb on + strand, within Shew_0840
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml remove 961,199 - Shew_0837 0.71 -2.3 961,911 + +0.2 962,539 - Shew_0839 0.66 +1.2 962,692 + Shew_0839 0.82 +0.6 962,785 + -0.3 962,793 - +0.3 962,986 - -0.2 963,010 - -0.9 963,048 - -1.6 963,146 - Shew_0840 0.13 -1.8 963,288 - Shew_0840 0.32 -2.8 963,335 + Shew_0840 0.38 -4.5 963,693 + Shew_0840 0.84 -1.3
Or see this region's nucleotide sequence