Strain Fitness in Shewanella loihica PV-4 around Shew_0709

Experiment: Polymyxin B sulfate 20 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt Shew_0709: Shew_0709 - catalase/peroxidase HPI (RefSeq), at 803,961 to 806,231 _0709 Position (kb) 803 804 805 806 807Strain fitness (log2 ratio) -2 -1 0 1at 803.302 kb on + strandat 803.724 kb on + strandat 803.944 kb on + strandat 804.014 kb on + strandat 804.458 kb on + strand, within Shew_0709at 804.489 kb on + strand, within Shew_0709at 804.534 kb on - strand, within Shew_0709at 804.776 kb on - strand, within Shew_0709at 804.845 kb on - strand, within Shew_0709at 805.071 kb on + strand, within Shew_0709at 805.108 kb on - strand, within Shew_0709at 805.159 kb on + strand, within Shew_0709at 805.236 kb on + strand, within Shew_0709at 805.443 kb on + strand, within Shew_0709at 805.577 kb on - strand, within Shew_0709at 805.669 kb on + strand, within Shew_0709at 805.669 kb on + strand, within Shew_0709at 805.669 kb on + strand, within Shew_0709at 805.825 kb on + strand, within Shew_0709at 805.833 kb on - strand, within Shew_0709at 805.861 kb on - strand, within Shew_0709at 806.011 kb on + strandat 806.019 kb on - strandat 806.164 kb on + strandat 806.994 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml
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803,302 + -0.1
803,724 + -0.6
803,944 + +0.3
804,014 + +1.3
804,458 + Shew_0709 0.22 +0.2
804,489 + Shew_0709 0.23 -1.3
804,534 - Shew_0709 0.25 +0.2
804,776 - Shew_0709 0.36 -1.3
804,845 - Shew_0709 0.39 +0.5
805,071 + Shew_0709 0.49 -0.3
805,108 - Shew_0709 0.51 +0.2
805,159 + Shew_0709 0.53 +1.1
805,236 + Shew_0709 0.56 +0.2
805,443 + Shew_0709 0.65 +0.1
805,577 - Shew_0709 0.71 -2.0
805,669 + Shew_0709 0.75 +0.6
805,669 + Shew_0709 0.75 +0.5
805,669 + Shew_0709 0.75 +0.1
805,825 + Shew_0709 0.82 +0.7
805,833 - Shew_0709 0.82 +1.0
805,861 - Shew_0709 0.84 +1.1
806,011 + +0.5
806,019 - +1.0
806,164 + +0.2
806,994 + -0.1

Or see this region's nucleotide sequence