Strain Fitness in Shewanella loihica PV-4 around Shew_0413

Experiment: Polymyxin B sulfate 20 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0411 and Shew_0412 overlap by 11 nucleotidesShew_0412 and Shew_0413 are separated by 12 nucleotidesShew_0413 and Shew_0414 overlap by 4 nucleotides Shew_0411: Shew_0411 - outer membrane efflux protein (RefSeq), at 464,481 to 465,884 _0411 Shew_0412: Shew_0412 - secretion protein HlyD family protein (RefSeq), at 465,874 to 466,845 _0412 Shew_0413: Shew_0413 - ABC-2 type transporter (RefSeq), at 466,858 to 468,030 _0413 Shew_0414: Shew_0414 - ABC-2 type transporter (RefSeq), at 468,027 to 469,172 _0414 Position (kb) 466 467 468 469Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 465.858 kb on + strandat 466.097 kb on + strand, within Shew_0412at 466.499 kb on + strand, within Shew_0412at 466.519 kb on + strand, within Shew_0412at 466.606 kb on - strand, within Shew_0412at 466.636 kb on - strand, within Shew_0412at 466.827 kb on - strandat 466.861 kb on + strandat 466.983 kb on - strand, within Shew_0413at 467.115 kb on + strand, within Shew_0413at 467.381 kb on - strand, within Shew_0413at 467.438 kb on - strand, within Shew_0413at 467.438 kb on - strand, within Shew_0413at 467.542 kb on + strand, within Shew_0413at 467.686 kb on + strand, within Shew_0413at 467.994 kb on - strandat 468.064 kb on - strandat 468.193 kb on + strand, within Shew_0414at 468.303 kb on - strand, within Shew_0414at 468.426 kb on + strand, within Shew_0414at 468.427 kb on + strand, within Shew_0414at 468.620 kb on - strand, within Shew_0414at 468.721 kb on + strand, within Shew_0414at 468.786 kb on - strand, within Shew_0414at 468.852 kb on - strand, within Shew_0414

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml
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465,858 + -0.7
466,097 + Shew_0412 0.23 +1.3
466,499 + Shew_0412 0.64 -1.4
466,519 + Shew_0412 0.66 -0.4
466,606 - Shew_0412 0.75 +0.6
466,636 - Shew_0412 0.78 -1.1
466,827 - -1.3
466,861 + -0.3
466,983 - Shew_0413 0.11 -1.7
467,115 + Shew_0413 0.22 -2.6
467,381 - Shew_0413 0.45 -1.7
467,438 - Shew_0413 0.49 -1.3
467,438 - Shew_0413 0.49 -0.3
467,542 + Shew_0413 0.58 +0.3
467,686 + Shew_0413 0.71 -0.5
467,994 - -3.9
468,064 - -1.5
468,193 + Shew_0414 0.14 -0.1
468,303 - Shew_0414 0.24 -1.7
468,426 + Shew_0414 0.35 -2.9
468,427 + Shew_0414 0.35 -1.1
468,620 - Shew_0414 0.52 -0.1
468,721 + Shew_0414 0.61 -0.1
468,786 - Shew_0414 0.66 -1.6
468,852 - Shew_0414 0.72 -2.4

Or see this region's nucleotide sequence