Strain Fitness in Shewanella loihica PV-4 around Shew_0413
Experiment: Polymyxin B sulfate 20 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Polymyxin B sulfate 20 mg/ml |
---|---|---|---|---|---|
remove | |||||
465,858 | + | -0.7 | |||
466,097 | + | Shew_0412 | 0.23 | +1.3 | |
466,499 | + | Shew_0412 | 0.64 | -1.4 | |
466,519 | + | Shew_0412 | 0.66 | -0.4 | |
466,606 | - | Shew_0412 | 0.75 | +0.6 | |
466,636 | - | Shew_0412 | 0.78 | -1.1 | |
466,827 | - | -1.3 | |||
466,861 | + | -0.3 | |||
466,983 | - | Shew_0413 | 0.11 | -1.7 | |
467,115 | + | Shew_0413 | 0.22 | -2.6 | |
467,381 | - | Shew_0413 | 0.45 | -1.7 | |
467,438 | - | Shew_0413 | 0.49 | -1.3 | |
467,438 | - | Shew_0413 | 0.49 | -0.3 | |
467,542 | + | Shew_0413 | 0.58 | +0.3 | |
467,686 | + | Shew_0413 | 0.71 | -0.5 | |
467,994 | - | -3.9 | |||
468,064 | - | -1.5 | |||
468,193 | + | Shew_0414 | 0.14 | -0.1 | |
468,303 | - | Shew_0414 | 0.24 | -1.7 | |
468,426 | + | Shew_0414 | 0.35 | -2.9 | |
468,427 | + | Shew_0414 | 0.35 | -1.1 | |
468,620 | - | Shew_0414 | 0.52 | -0.1 | |
468,721 | + | Shew_0414 | 0.61 | -0.1 | |
468,786 | - | Shew_0414 | 0.66 | -1.6 | |
468,852 | - | Shew_0414 | 0.72 | -2.4 |
Or see this region's nucleotide sequence