Experiment: Polymyxin B sulfate 20 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0313 and Shew_0314 are separated by 116 nucleotides Shew_0314 and Shew_0315 are separated by 284 nucleotides
Shew_0313: Shew_0313 - putative outer membrane adhesin like proteiin (RefSeq), at 340,995 to 355,505
_0313
Shew_0314: Shew_0314 - putative outer membrane adhesin like proteiin (RefSeq), at 355,622 to 360,283
_0314
Shew_0315: Shew_0315 - HemY domain-containing protein (RefSeq), at 360,568 to 361,734
_0315
Position (kb) 355
356
357
358
359
360
361 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 355.054 kb on - strand at 355.072 kb on + strand at 355.827 kb on - strand at 355.952 kb on + strand at 356.535 kb on - strand, within Shew_0314 at 356.535 kb on - strand, within Shew_0314 at 356.574 kb on + strand, within Shew_0314 at 356.795 kb on + strand, within Shew_0314 at 356.818 kb on - strand, within Shew_0314 at 356.905 kb on - strand, within Shew_0314 at 356.905 kb on - strand, within Shew_0314 at 356.952 kb on - strand, within Shew_0314 at 357.064 kb on - strand, within Shew_0314 at 357.113 kb on - strand, within Shew_0314 at 357.283 kb on + strand, within Shew_0314 at 357.291 kb on - strand, within Shew_0314 at 357.385 kb on + strand, within Shew_0314 at 359.038 kb on - strand, within Shew_0314 at 359.092 kb on - strand, within Shew_0314 at 359.124 kb on + strand, within Shew_0314 at 359.334 kb on + strand, within Shew_0314 at 359.536 kb on + strand, within Shew_0314 at 359.624 kb on + strand, within Shew_0314 at 359.626 kb on - strand, within Shew_0314 at 359.640 kb on + strand, within Shew_0314 at 359.666 kb on + strand, within Shew_0314 at 359.690 kb on - strand, within Shew_0314 at 359.690 kb on - strand, within Shew_0314 at 359.876 kb on + strand at 360.218 kb on - strand at 360.228 kb on + strand at 360.246 kb on + strand at 360.287 kb on - strand at 360.365 kb on + strand at 360.365 kb on - strand at 360.365 kb on + strand at 360.365 kb on + strand at 360.373 kb on - strand at 360.373 kb on - strand at 360.373 kb on - strand at 360.373 kb on - strand at 360.483 kb on - strand at 361.178 kb on + strand, within Shew_0315
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml remove 355,054 - +0.4 355,072 + +0.6 355,827 - +0.0 355,952 + +0.3 356,535 - Shew_0314 0.20 +0.2 356,535 - Shew_0314 0.20 -0.0 356,574 + Shew_0314 0.20 +0.0 356,795 + Shew_0314 0.25 -0.2 356,818 - Shew_0314 0.26 -0.1 356,905 - Shew_0314 0.28 +0.0 356,905 - Shew_0314 0.28 +1.0 356,952 - Shew_0314 0.29 -0.0 357,064 - Shew_0314 0.31 -1.9 357,113 - Shew_0314 0.32 +0.3 357,283 + Shew_0314 0.36 +0.7 357,291 - Shew_0314 0.36 -0.2 357,385 + Shew_0314 0.38 -0.5 359,038 - Shew_0314 0.73 +0.2 359,092 - Shew_0314 0.74 -0.7 359,124 + Shew_0314 0.75 -3.3 359,334 + Shew_0314 0.80 -0.3 359,536 + Shew_0314 0.84 +0.5 359,624 + Shew_0314 0.86 -1.3 359,626 - Shew_0314 0.86 -0.1 359,640 + Shew_0314 0.86 -1.4 359,666 + Shew_0314 0.87 +0.3 359,690 - Shew_0314 0.87 +0.0 359,690 - Shew_0314 0.87 +0.1 359,876 + -0.2 360,218 - +0.1 360,228 + +0.7 360,246 + +0.3 360,287 - +0.2 360,365 + -1.2 360,365 - -0.3 360,365 + +1.5 360,365 + -0.2 360,373 - +0.3 360,373 - +0.5 360,373 - +0.7 360,373 - +0.5 360,483 - +0.6 361,178 + Shew_0315 0.52 -0.2
Or see this region's nucleotide sequence