Strain Fitness in Shewanella loihica PV-4 around Shew_0281

Experiment: Polymyxin B sulfate 20 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0280 and Shew_0281 are separated by 193 nucleotidesShew_0281 and Shew_0282 are separated by 24 nucleotides Shew_0280: Shew_0280 - GntR family transcriptional regulator (RefSeq), at 297,449 to 298,150 _0280 Shew_0281: Shew_0281 - phospholipid/glycerol acyltransferase (RefSeq), at 298,344 to 299,291 _0281 Shew_0282: Shew_0282 - phospholipid/glycerol acyltransferase (RefSeq), at 299,316 to 300,200 _0282 Position (kb) 298 299 300Strain fitness (log2 ratio) -2 -1 0 1at 297.446 kb on + strandat 297.454 kb on - strandat 297.752 kb on - strand, within Shew_0280at 297.875 kb on + strand, within Shew_0280at 297.893 kb on - strand, within Shew_0280at 298.049 kb on - strand, within Shew_0280at 298.618 kb on - strand, within Shew_0281at 298.697 kb on + strand, within Shew_0281at 298.767 kb on + strand, within Shew_0281at 298.777 kb on + strand, within Shew_0281at 298.777 kb on + strand, within Shew_0281at 298.855 kb on + strand, within Shew_0281at 298.978 kb on - strand, within Shew_0281at 299.205 kb on + strandat 299.260 kb on + strandat 299.312 kb on - strandat 299.604 kb on - strand, within Shew_0282at 299.796 kb on + strand, within Shew_0282at 299.825 kb on - strand, within Shew_0282at 300.258 kb on + strandat 300.289 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml
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297,446 + -2.5
297,454 - +0.3
297,752 - Shew_0280 0.43 +0.2
297,875 + Shew_0280 0.61 +0.8
297,893 - Shew_0280 0.63 +0.0
298,049 - Shew_0280 0.85 +1.0
298,618 - Shew_0281 0.29 -0.6
298,697 + Shew_0281 0.37 -2.2
298,767 + Shew_0281 0.45 -1.2
298,777 + Shew_0281 0.46 -1.6
298,777 + Shew_0281 0.46 +0.2
298,855 + Shew_0281 0.54 -1.1
298,978 - Shew_0281 0.67 -1.8
299,205 + -1.2
299,260 + -1.4
299,312 - +0.9
299,604 - Shew_0282 0.33 +1.3
299,796 + Shew_0282 0.54 -0.3
299,825 - Shew_0282 0.58 +1.2
300,258 + +0.1
300,289 - -0.7

Or see this region's nucleotide sequence