Experiment: Polymyxin B sulfate 20 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0246 and Shew_0247 are separated by 306 nucleotides Shew_0247 and Shew_0248 are separated by 44 nucleotides Shew_0248 and Shew_0249 are separated by 455 nucleotides
Shew_0246: Shew_0246 - hypothetical protein (RefSeq), at 265,675 to 266,292
_0246
Shew_0247: Shew_0247 - hypothetical protein (RefSeq), at 266,599 to 266,994
_0247
Shew_0248: Shew_0248 - GCN5-related N-acetyltransferase (RefSeq), at 267,039 to 267,596
_0248
Shew_0249: Shew_0249 - GCN5-related N-acetyltransferase (RefSeq), at 268,052 to 268,594
_0249
Position (kb) 267
268 Strain fitness (log2 ratio) -2
-1
0
1 at 266.568 kb on + strand at 266.576 kb on - strand at 266.616 kb on + strand at 266.688 kb on + strand, within Shew_0247 at 266.885 kb on + strand, within Shew_0247 at 266.893 kb on - strand, within Shew_0247 at 266.893 kb on - strand, within Shew_0247 at 267.192 kb on - strand, within Shew_0248 at 267.285 kb on - strand, within Shew_0248 at 267.287 kb on + strand, within Shew_0248 at 267.295 kb on - strand, within Shew_0248 at 267.295 kb on - strand, within Shew_0248 at 267.369 kb on + strand, within Shew_0248 at 267.371 kb on - strand, within Shew_0248 at 267.418 kb on + strand, within Shew_0248 at 267.592 kb on - strand at 267.607 kb on - strand at 267.913 kb on + strand at 267.932 kb on - strand at 268.026 kb on + strand at 268.110 kb on - strand, within Shew_0249 at 268.171 kb on - strand, within Shew_0249 at 268.342 kb on - strand, within Shew_0249 at 268.507 kb on + strand, within Shew_0249
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml remove 266,568 + +0.3 266,576 - +0.2 266,616 + +0.3 266,688 + Shew_0247 0.22 +0.4 266,885 + Shew_0247 0.72 +0.2 266,893 - Shew_0247 0.74 +1.1 266,893 - Shew_0247 0.74 -0.1 267,192 - Shew_0248 0.27 -1.9 267,285 - Shew_0248 0.44 -0.2 267,287 + Shew_0248 0.44 -0.3 267,295 - Shew_0248 0.46 -1.0 267,295 - Shew_0248 0.46 -0.0 267,369 + Shew_0248 0.59 +0.8 267,371 - Shew_0248 0.59 +0.5 267,418 + Shew_0248 0.68 -1.1 267,592 - +1.5 267,607 - +0.6 267,913 + +1.0 267,932 - -2.3 268,026 + +0.3 268,110 - Shew_0249 0.11 -0.2 268,171 - Shew_0249 0.22 +1.1 268,342 - Shew_0249 0.53 +0.3 268,507 + Shew_0249 0.84 +0.2
Or see this region's nucleotide sequence