Strain Fitness in Shewanella loihica PV-4 around Shew_0078

Experiment: Polymyxin B sulfate 20 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0077 and Shew_0078 are separated by 136 nucleotidesShew_0078 and Shew_0079 are separated by 203 nucleotides Shew_0077: Shew_0077 - GCN5-related N-acetyltransferase (RefSeq), at 89,699 to 90,652 _0077 Shew_0078: Shew_0078 - ribokinase-like domain-containing protein (RefSeq), at 90,789 to 91,649 _0078 Shew_0079: Shew_0079 - TAP domain-containing protein (RefSeq), at 91,853 to 93,310 _0079 Position (kb) 90 91 92Strain fitness (log2 ratio) -1 0 1at 89.840 kb on - strand, within Shew_0077at 89.909 kb on + strand, within Shew_0077at 89.975 kb on + strand, within Shew_0077at 90.001 kb on + strand, within Shew_0077at 90.009 kb on - strand, within Shew_0077at 90.107 kb on + strand, within Shew_0077at 90.107 kb on + strand, within Shew_0077at 90.115 kb on - strand, within Shew_0077at 90.115 kb on - strand, within Shew_0077at 90.198 kb on + strand, within Shew_0077at 90.441 kb on + strand, within Shew_0077at 90.496 kb on - strand, within Shew_0077at 90.500 kb on + strand, within Shew_0077at 90.707 kb on - strandat 90.789 kb on - strandat 90.849 kb on + strandat 90.921 kb on + strand, within Shew_0078at 90.927 kb on + strand, within Shew_0078at 90.932 kb on + strand, within Shew_0078at 90.940 kb on - strand, within Shew_0078at 90.940 kb on - strand, within Shew_0078at 90.944 kb on + strand, within Shew_0078at 90.962 kb on - strand, within Shew_0078at 91.033 kb on + strand, within Shew_0078at 91.216 kb on - strand, within Shew_0078at 91.226 kb on - strand, within Shew_0078at 91.461 kb on - strand, within Shew_0078at 91.572 kb on - strandat 91.825 kb on + strandat 91.831 kb on + strandat 91.833 kb on - strandat 91.901 kb on - strandat 91.989 kb on + strandat 91.997 kb on - strandat 92.016 kb on - strand, within Shew_0079at 92.152 kb on + strand, within Shew_0079at 92.248 kb on - strand, within Shew_0079at 92.248 kb on - strand, within Shew_0079at 92.351 kb on + strand, within Shew_0079at 92.573 kb on - strand, within Shew_0079at 92.632 kb on + strand, within Shew_0079

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 20 mg/ml
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89,840 - Shew_0077 0.15 +0.7
89,909 + Shew_0077 0.22 +0.4
89,975 + Shew_0077 0.29 +0.1
90,001 + Shew_0077 0.32 +0.2
90,009 - Shew_0077 0.32 +0.7
90,107 + Shew_0077 0.43 +0.4
90,107 + Shew_0077 0.43 +0.1
90,115 - Shew_0077 0.44 +0.7
90,115 - Shew_0077 0.44 +0.3
90,198 + Shew_0077 0.52 +0.4
90,441 + Shew_0077 0.78 +0.6
90,496 - Shew_0077 0.84 -1.1
90,500 + Shew_0077 0.84 +0.3
90,707 - +1.1
90,789 - +1.2
90,849 + +0.4
90,921 + Shew_0078 0.15 +0.8
90,927 + Shew_0078 0.16 +0.5
90,932 + Shew_0078 0.17 +0.2
90,940 - Shew_0078 0.18 +0.7
90,940 - Shew_0078 0.18 +0.5
90,944 + Shew_0078 0.18 +0.5
90,962 - Shew_0078 0.20 -0.2
91,033 + Shew_0078 0.28 +0.5
91,216 - Shew_0078 0.50 +0.7
91,226 - Shew_0078 0.51 +0.9
91,461 - Shew_0078 0.78 +0.2
91,572 - +0.8
91,825 + +0.2
91,831 + -0.0
91,833 - -0.0
91,901 - +0.6
91,989 + -0.1
91,997 - -0.1
92,016 - Shew_0079 0.11 +0.3
92,152 + Shew_0079 0.21 -0.2
92,248 - Shew_0079 0.27 +0.2
92,248 - Shew_0079 0.27 -0.3
92,351 + Shew_0079 0.34 -0.9
92,573 - Shew_0079 0.49 +0.8
92,632 + Shew_0079 0.53 +0.2

Or see this region's nucleotide sequence