Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS05300 and MMJJ_RS05305 are separated by 229 nucleotides MMJJ_RS05305 and MMJJ_RS05310 are separated by 54 nucleotides MMJJ_RS05310 and MMJJ_RS05315 are separated by 100 nucleotides
MMJJ_RS05300: MMJJ_RS05300 - potassium channel protein, at 982,453 to 983,460
_RS05300
MMJJ_RS05305: MMJJ_RS05305 - 16S ribosomal RNA, at 983,690 to 985,156
_RS05305
MMJJ_RS05310: MMJJ_RS05310 - tRNA-Ala, at 985,211 to 985,283
_RS05310
MMJJ_RS05315: MMJJ_RS05315 - 23S ribosomal RNA, at 985,384 to 988,351
_RS05315
Position (kb) 983
984
985
986 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 982.707 kb on - strand, within MMJJ_RS05300 at 982.723 kb on + strand, within MMJJ_RS05300 at 982.729 kb on - strand, within MMJJ_RS05300 at 982.729 kb on - strand, within MMJJ_RS05300 at 982.729 kb on - strand, within MMJJ_RS05300 at 982.730 kb on + strand, within MMJJ_RS05300 at 982.730 kb on + strand, within MMJJ_RS05300 at 982.761 kb on + strand, within MMJJ_RS05300 at 982.800 kb on - strand, within MMJJ_RS05300 at 982.817 kb on - strand, within MMJJ_RS05300 at 982.820 kb on - strand, within MMJJ_RS05300 at 982.820 kb on - strand, within MMJJ_RS05300 at 982.820 kb on - strand, within MMJJ_RS05300 at 982.820 kb on - strand, within MMJJ_RS05300 at 982.821 kb on + strand, within MMJJ_RS05300 at 982.821 kb on + strand, within MMJJ_RS05300 at 982.821 kb on + strand, within MMJJ_RS05300 at 982.821 kb on + strand, within MMJJ_RS05300 at 982.849 kb on - strand, within MMJJ_RS05300 at 982.849 kb on - strand, within MMJJ_RS05300 at 982.850 kb on + strand, within MMJJ_RS05300 at 982.850 kb on + strand, within MMJJ_RS05300 at 982.850 kb on + strand, within MMJJ_RS05300 at 982.863 kb on - strand, within MMJJ_RS05300 at 982.866 kb on - strand, within MMJJ_RS05300 at 982.866 kb on - strand, within MMJJ_RS05300 at 982.867 kb on + strand, within MMJJ_RS05300 at 982.867 kb on + strand, within MMJJ_RS05300 at 982.867 kb on + strand, within MMJJ_RS05300 at 982.881 kb on + strand, within MMJJ_RS05300 at 982.915 kb on - strand, within MMJJ_RS05300 at 982.916 kb on + strand, within MMJJ_RS05300 at 982.916 kb on + strand, within MMJJ_RS05300 at 982.916 kb on + strand, within MMJJ_RS05300 at 982.916 kb on + strand, within MMJJ_RS05300 at 982.916 kb on + strand, within MMJJ_RS05300 at 982.917 kb on - strand, within MMJJ_RS05300 at 982.917 kb on - strand, within MMJJ_RS05300 at 982.917 kb on - strand, within MMJJ_RS05300 at 982.917 kb on - strand, within MMJJ_RS05300 at 982.917 kb on - strand, within MMJJ_RS05300 at 982.917 kb on - strand, within MMJJ_RS05300 at 982.918 kb on + strand, within MMJJ_RS05300 at 982.918 kb on + strand, within MMJJ_RS05300 at 982.918 kb on + strand, within MMJJ_RS05300 at 982.945 kb on - strand, within MMJJ_RS05300 at 982.946 kb on + strand, within MMJJ_RS05300 at 982.952 kb on - strand, within MMJJ_RS05300 at 982.952 kb on - strand, within MMJJ_RS05300 at 982.953 kb on + strand, within MMJJ_RS05300 at 982.953 kb on + strand, within MMJJ_RS05300 at 982.964 kb on - strand, within MMJJ_RS05300 at 982.964 kb on - strand, within MMJJ_RS05300 at 982.964 kb on - strand, within MMJJ_RS05300 at 982.965 kb on + strand, within MMJJ_RS05300 at 982.965 kb on + strand, within MMJJ_RS05300 at 982.965 kb on + strand, within MMJJ_RS05300 at 983.010 kb on - strand, within MMJJ_RS05300 at 983.010 kb on - strand, within MMJJ_RS05300 at 983.015 kb on - strand, within MMJJ_RS05300 at 983.015 kb on - strand, within MMJJ_RS05300 at 983.015 kb on - strand, within MMJJ_RS05300 at 983.015 kb on - strand, within MMJJ_RS05300 at 983.015 kb on - strand, within MMJJ_RS05300 at 983.015 kb on - strand, within MMJJ_RS05300 at 983.015 kb on - strand, within MMJJ_RS05300 at 983.015 kb on - strand, within MMJJ_RS05300 at 983.015 kb on - strand, within MMJJ_RS05300 at 983.015 kb on - strand, within MMJJ_RS05300 at 983.016 kb on + strand, within MMJJ_RS05300 at 983.016 kb on + strand, within MMJJ_RS05300 at 983.016 kb on + strand, within MMJJ_RS05300 at 983.016 kb on + strand, within MMJJ_RS05300 at 983.016 kb on + strand, within MMJJ_RS05300 at 983.016 kb on + strand, within MMJJ_RS05300 at 983.016 kb on + strand, within MMJJ_RS05300 at 983.016 kb on + strand, within MMJJ_RS05300 at 983.016 kb on + strand, within MMJJ_RS05300 at 983.017 kb on - strand, within MMJJ_RS05300 at 983.017 kb on - strand, within MMJJ_RS05300 at 983.017 kb on - strand, within MMJJ_RS05300 at 983.017 kb on - strand, within MMJJ_RS05300 at 983.017 kb on - strand, within MMJJ_RS05300 at 983.018 kb on + strand, within MMJJ_RS05300 at 983.018 kb on + strand, within MMJJ_RS05300 at 983.018 kb on + strand, within MMJJ_RS05300 at 983.018 kb on + strand, within MMJJ_RS05300 at 983.018 kb on + strand, within MMJJ_RS05300 at 983.018 kb on + strand, within MMJJ_RS05300 at 983.019 kb on - strand, within MMJJ_RS05300 at 983.019 kb on - strand at 983.019 kb on - strand, within MMJJ_RS05300 at 983.019 kb on - strand, within MMJJ_RS05300 at 983.019 kb on - strand, within MMJJ_RS05300 at 983.019 kb on - strand, within MMJJ_RS05300 at 983.019 kb on - strand, within MMJJ_RS05300 at 983.019 kb on - strand at 983.019 kb on - strand, within MMJJ_RS05300 at 983.020 kb on + strand, within MMJJ_RS05300 at 983.020 kb on + strand, within MMJJ_RS05300 at 983.020 kb on + strand, within MMJJ_RS05300 at 983.020 kb on + strand, within MMJJ_RS05300 at 983.022 kb on - strand, within MMJJ_RS05300 at 983.023 kb on + strand, within MMJJ_RS05300 at 983.055 kb on + strand, within MMJJ_RS05300 at 983.055 kb on + strand, within MMJJ_RS05300 at 983.057 kb on + strand, within MMJJ_RS05300 at 983.134 kb on - strand, within MMJJ_RS05300 at 983.134 kb on - strand, within MMJJ_RS05300 at 983.134 kb on - strand, within MMJJ_RS05300 at 983.211 kb on - strand, within MMJJ_RS05300 at 983.227 kb on - strand, within MMJJ_RS05300 at 983.227 kb on - strand, within MMJJ_RS05300 at 983.228 kb on + strand, within MMJJ_RS05300 at 983.258 kb on - strand, within MMJJ_RS05300 at 983.259 kb on + strand, within MMJJ_RS05300 at 983.259 kb on + strand, within MMJJ_RS05300 at 983.309 kb on - strand, within MMJJ_RS05300 at 983.309 kb on - strand, within MMJJ_RS05300 at 983.310 kb on + strand, within MMJJ_RS05300 at 983.310 kb on + strand, within MMJJ_RS05300 at 983.316 kb on - strand, within MMJJ_RS05300 at 983.317 kb on + strand, within MMJJ_RS05300 at 983.317 kb on + strand, within MMJJ_RS05300 at 983.317 kb on + strand, within MMJJ_RS05300 at 983.319 kb on - strand, within MMJJ_RS05300 at 983.319 kb on - strand, within MMJJ_RS05300 at 983.320 kb on + strand, within MMJJ_RS05300 at 983.320 kb on + strand, within MMJJ_RS05300 at 983.320 kb on + strand, within MMJJ_RS05300 at 983.320 kb on + strand, within MMJJ_RS05300 at 983.322 kb on - strand, within MMJJ_RS05300 at 983.323 kb on + strand, within MMJJ_RS05300 at 983.360 kb on - strand at 983.360 kb on - strand at 983.361 kb on + strand at 983.361 kb on + strand at 983.395 kb on - strand at 983.395 kb on - strand at 983.396 kb on + strand at 983.408 kb on - strand at 983.409 kb on + strand at 983.435 kb on - strand at 983.435 kb on - strand at 983.435 kb on - strand at 983.435 kb on - strand at 983.436 kb on + strand at 983.436 kb on + strand at 983.436 kb on + strand at 983.458 kb on - strand at 983.458 kb on - strand at 983.459 kb on + strand at 983.484 kb on + strand at 983.485 kb on - strand at 983.485 kb on - strand at 983.486 kb on + strand at 985.198 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE remove 982,707 - MMJJ_RS05300 0.25 -1.8 982,723 + MMJJ_RS05300 0.27 -3.1 982,729 - MMJJ_RS05300 0.27 -1.4 982,729 - MMJJ_RS05300 0.27 -2.6 982,729 - MMJJ_RS05300 0.27 -3.0 982,730 + MMJJ_RS05300 0.27 -0.5 982,730 + MMJJ_RS05300 0.27 -1.7 982,761 + MMJJ_RS05300 0.31 -1.7 982,800 - MMJJ_RS05300 0.34 -0.4 982,817 - MMJJ_RS05300 0.36 -2.7 982,820 - MMJJ_RS05300 0.36 -3.0 982,820 - MMJJ_RS05300 0.36 -3.3 982,820 - MMJJ_RS05300 0.36 -0.7 982,820 - MMJJ_RS05300 0.36 +0.4 982,821 + MMJJ_RS05300 0.37 +0.2 982,821 + MMJJ_RS05300 0.37 -0.4 982,821 + MMJJ_RS05300 0.37 -3.1 982,821 + MMJJ_RS05300 0.37 -2.0 982,849 - MMJJ_RS05300 0.39 -2.0 982,849 - MMJJ_RS05300 0.39 -2.6 982,850 + MMJJ_RS05300 0.39 -4.1 982,850 + MMJJ_RS05300 0.39 -2.3 982,850 + MMJJ_RS05300 0.39 -3.3 982,863 - MMJJ_RS05300 0.41 -2.7 982,866 - MMJJ_RS05300 0.41 +1.3 982,866 - MMJJ_RS05300 0.41 -1.3 982,867 + MMJJ_RS05300 0.41 +0.2 982,867 + MMJJ_RS05300 0.41 -2.7 982,867 + MMJJ_RS05300 0.41 +0.4 982,881 + MMJJ_RS05300 0.42 +0.6 982,915 - MMJJ_RS05300 0.46 +0.7 982,916 + MMJJ_RS05300 0.46 -0.8 982,916 + MMJJ_RS05300 0.46 -1.4 982,916 + MMJJ_RS05300 0.46 -2.2 982,916 + MMJJ_RS05300 0.46 +0.0 982,916 + MMJJ_RS05300 0.46 -2.8 982,917 - MMJJ_RS05300 0.46 -2.1 982,917 - MMJJ_RS05300 0.46 -0.6 982,917 - MMJJ_RS05300 0.46 +0.1 982,917 - MMJJ_RS05300 0.46 -1.8 982,917 - MMJJ_RS05300 0.46 -3.8 982,917 - MMJJ_RS05300 0.46 -0.0 982,918 + MMJJ_RS05300 0.46 -3.7 982,918 + MMJJ_RS05300 0.46 -1.2 982,918 + MMJJ_RS05300 0.46 +0.4 982,945 - MMJJ_RS05300 0.49 -2.0 982,946 + MMJJ_RS05300 0.49 -1.9 982,952 - MMJJ_RS05300 0.50 -2.3 982,952 - MMJJ_RS05300 0.50 -2.2 982,953 + MMJJ_RS05300 0.50 -4.1 982,953 + MMJJ_RS05300 0.50 -0.6 982,964 - MMJJ_RS05300 0.51 -1.0 982,964 - MMJJ_RS05300 0.51 -2.0 982,964 - MMJJ_RS05300 0.51 -1.6 982,965 + MMJJ_RS05300 0.51 -3.6 982,965 + MMJJ_RS05300 0.51 -2.7 982,965 + MMJJ_RS05300 0.51 -3.1 983,010 - MMJJ_RS05300 0.55 -1.7 983,010 - MMJJ_RS05300 0.55 -2.8 983,015 - MMJJ_RS05300 0.56 -1.9 983,015 - MMJJ_RS05300 0.56 -4.0 983,015 - MMJJ_RS05300 0.56 -1.8 983,015 - MMJJ_RS05300 0.56 +2.0 983,015 - MMJJ_RS05300 0.56 -1.0 983,015 - MMJJ_RS05300 0.56 -2.4 983,015 - MMJJ_RS05300 0.56 -1.2 983,015 - MMJJ_RS05300 0.56 -2.9 983,015 - MMJJ_RS05300 0.56 -1.5 983,015 - MMJJ_RS05300 0.56 -2.7 983,016 + MMJJ_RS05300 0.56 -2.9 983,016 + MMJJ_RS05300 0.56 -2.2 983,016 + MMJJ_RS05300 0.56 +0.1 983,016 + MMJJ_RS05300 0.56 -2.1 983,016 + MMJJ_RS05300 0.56 +0.3 983,016 + MMJJ_RS05300 0.56 -3.4 983,016 + MMJJ_RS05300 0.56 -2.0 983,016 + MMJJ_RS05300 0.56 +0.4 983,016 + MMJJ_RS05300 0.56 -1.3 983,017 - MMJJ_RS05300 0.56 +2.4 983,017 - MMJJ_RS05300 0.56 -5.4 983,017 - MMJJ_RS05300 0.56 -2.4 983,017 - MMJJ_RS05300 0.56 -1.2 983,017 - MMJJ_RS05300 0.56 -2.0 983,018 + MMJJ_RS05300 0.56 -2.4 983,018 + MMJJ_RS05300 0.56 -1.0 983,018 + MMJJ_RS05300 0.56 -2.6 983,018 + MMJJ_RS05300 0.56 -3.3 983,018 + MMJJ_RS05300 0.56 -1.5 983,018 + MMJJ_RS05300 0.56 -0.8 983,019 - MMJJ_RS05300 0.56 -2.9 983,019 - -0.2 983,019 - MMJJ_RS05300 0.56 -2.5 983,019 - MMJJ_RS05300 0.56 -0.6 983,019 - MMJJ_RS05300 0.56 -3.3 983,019 - MMJJ_RS05300 0.56 -1.5 983,019 - MMJJ_RS05300 0.56 -3.0 983,019 - +1.4 983,019 - MMJJ_RS05300 0.56 -2.8 983,020 + MMJJ_RS05300 0.56 -3.1 983,020 + MMJJ_RS05300 0.56 -0.9 983,020 + MMJJ_RS05300 0.56 -1.9 983,020 + MMJJ_RS05300 0.56 -2.2 983,022 - MMJJ_RS05300 0.56 -1.2 983,023 + MMJJ_RS05300 0.57 -2.3 983,055 + MMJJ_RS05300 0.60 -2.2 983,055 + MMJJ_RS05300 0.60 -2.8 983,057 + MMJJ_RS05300 0.60 +0.9 983,134 - MMJJ_RS05300 0.68 -1.2 983,134 - MMJJ_RS05300 0.68 -0.9 983,134 - MMJJ_RS05300 0.68 -0.0 983,211 - MMJJ_RS05300 0.75 -1.5 983,227 - MMJJ_RS05300 0.77 -1.2 983,227 - MMJJ_RS05300 0.77 -2.5 983,228 + MMJJ_RS05300 0.77 -2.0 983,258 - MMJJ_RS05300 0.80 -1.5 983,259 + MMJJ_RS05300 0.80 -4.1 983,259 + MMJJ_RS05300 0.80 -1.6 983,309 - MMJJ_RS05300 0.85 +1.2 983,309 - MMJJ_RS05300 0.85 -3.9 983,310 + MMJJ_RS05300 0.85 -1.8 983,310 + MMJJ_RS05300 0.85 -2.7 983,316 - MMJJ_RS05300 0.86 -3.0 983,317 + MMJJ_RS05300 0.86 -2.3 983,317 + MMJJ_RS05300 0.86 -0.3 983,317 + MMJJ_RS05300 0.86 -1.6 983,319 - MMJJ_RS05300 0.86 -2.0 983,319 - MMJJ_RS05300 0.86 -2.1 983,320 + MMJJ_RS05300 0.86 -2.1 983,320 + MMJJ_RS05300 0.86 -2.6 983,320 + MMJJ_RS05300 0.86 -2.5 983,320 + MMJJ_RS05300 0.86 -2.8 983,322 - MMJJ_RS05300 0.86 -1.9 983,323 + MMJJ_RS05300 0.86 -2.4 983,360 - -2.6 983,360 - -1.8 983,361 + -2.6 983,361 + -2.4 983,395 - -0.2 983,395 - -1.4 983,396 + -1.3 983,408 - -1.6 983,409 + -2.7 983,435 - -0.7 983,435 - -2.4 983,435 - -3.5 983,435 - -3.1 983,436 + -3.0 983,436 + -0.7 983,436 + -2.7 983,458 - +1.0 983,458 - -0.2 983,459 + -0.7 983,484 + +0.7 983,485 - -0.2 983,485 - +0.8 983,486 + -0.4 985,198 + -3.4
Or see this region's nucleotide sequence