Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS17230

Experiment: R2A with nitrite 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 50 mM
3,763,578	+		LRK54_RS17220	0.45	-0.4
3,763,578	+		LRK54_RS17220	0.45	+0.3
3,763,579	-		LRK54_RS17220	0.45	+0.2
3,763,579	-		LRK54_RS17220	0.45	-1.3
3,763,579	-		LRK54_RS17220	0.45	-1.5
3,763,579	-		LRK54_RS17220	0.45	-1.7
3,763,579	-		LRK54_RS17220	0.45	-1.9
3,763,579	-		LRK54_RS17220	0.45	-2.7
3,763,760	+		LRK54_RS17225	0.13	-0.8
3,763,985	+		LRK54_RS17225	0.47	-0.2
3,763,985	+		LRK54_RS17225	0.47	-1.5
3,763,986	-		LRK54_RS17225	0.47	-1.5
3,763,986	-		LRK54_RS17225	0.47	-1.1
3,764,135	+		LRK54_RS17225	0.69	-0.5
3,764,136	-		LRK54_RS17225	0.70	+1.1
3,764,136	-		LRK54_RS17225	0.70	-0.8
3,764,136	-		LRK54_RS17225	0.70	-1.1
3,764,136	-		LRK54_RS17225	0.70	-0.5
3,764,136	-		LRK54_RS17225	0.70	-0.4
3,764,153	+		LRK54_RS17225	0.72	-1.2
3,764,153	+		LRK54_RS17225	0.72	+0.2
3,764,153	+		LRK54_RS17225	0.72	-0.8
3,764,153	+		LRK54_RS17225	0.72	-0.7
3,764,153	+		LRK54_RS17225	0.72	-1.4
3,764,154	-		LRK54_RS17225	0.72	-1.5
3,764,154	-		LRK54_RS17225	0.72	-0.4
3,764,154	-		LRK54_RS17225	0.72	-1.2
3,764,154	-		LRK54_RS17225	0.72	-0.7
3,764,330	+				-0.8
3,764,331	-				-1.1
3,764,331	-				+0.0
3,764,331	-				+0.0
3,764,331	-				+0.9
3,764,331	-				-0.7
3,764,349	+				+0.3
3,764,350	-				+0.9
3,764,350	-				-1.1
3,764,350	-				+0.0
3,764,350	-				+0.0
3,764,350	-				-0.9
3,764,350	-				+0.2
3,764,350	-				-0.9
3,764,350	-				-1.2
3,764,350	-				-1.1
3,764,350	-				-1.5
3,764,567	-				-1.5
3,764,567	-				+0.3
3,764,567	-				-0.4
3,764,811	+		LRK54_RS17230	0.24	-0.7
3,764,811	+		LRK54_RS17230	0.24	-1.9
3,764,811	+		LRK54_RS17230	0.24	+0.3
3,764,811	+		LRK54_RS17230	0.24	-1.5
3,764,812	-		LRK54_RS17230	0.24	-0.4
3,764,812	-		LRK54_RS17230	0.24	-1.3
3,764,812	-		LRK54_RS17230	0.24	-1.3
3,764,812	-		LRK54_RS17230	0.24	-1.9
3,764,812	-		LRK54_RS17230	0.24	-1.1
3,764,812	-		LRK54_RS17230	0.24	-0.4
3,764,850	+		LRK54_RS17230	0.26	-0.2
3,764,850	+		LRK54_RS17230	0.26	-0.2
3,764,850	+		LRK54_RS17230	0.26	-0.9
3,764,851	-		LRK54_RS17230	0.26	-0.5
3,764,925	+		LRK54_RS17230	0.31	+1.1
3,764,926	-		LRK54_RS17230	0.31	+0.1
3,764,988	+		LRK54_RS17230	0.36	-0.5
3,764,988	+		LRK54_RS17230	0.36	-0.5
3,764,989	-		LRK54_RS17230	0.36	+1.3
3,764,989	-		LRK54_RS17230	0.36	+0.8
3,765,156	+		LRK54_RS17230	0.47	-0.5
3,765,156	+		LRK54_RS17230	0.47	+0.8
3,765,156	+		LRK54_RS17230	0.47	+0.6
3,765,156	+		LRK54_RS17230	0.47	-0.7
3,765,156	+		LRK54_RS17230	0.47	-2.0
3,765,156	+		LRK54_RS17230	0.47	-0.9
3,765,156	+		LRK54_RS17230	0.47	-0.4
3,765,157	-		LRK54_RS17230	0.47	-2.4
3,765,157	-		LRK54_RS17230	0.47	-2.8
3,765,157	-		LRK54_RS17230	0.47	-0.7
3,765,157	-		LRK54_RS17230	0.47	-0.9
3,765,157	-		LRK54_RS17230	0.47	-0.4
3,765,157	-		LRK54_RS17230	0.47	-0.5
3,765,157	-		LRK54_RS17230	0.47	-1.4
3,765,157	-		LRK54_RS17230	0.47	-0.3
3,765,186	+		LRK54_RS17230	0.49	+0.1
3,765,186	+		LRK54_RS17230	0.49	-2.7
3,765,186	+		LRK54_RS17230	0.49	-0.4
3,765,186	+		LRK54_RS17230	0.49	-0.2
3,765,186	+		LRK54_RS17230	0.49	+1.3
3,765,186	+		LRK54_RS17230	0.49	-0.9
3,765,187	-		LRK54_RS17230	0.49	+0.6
3,765,187	-		LRK54_RS17230	0.49	-0.8
3,765,187	-		LRK54_RS17230	0.49	+1.1
3,765,187	-		LRK54_RS17230	0.49	-0.9
3,765,187	-		LRK54_RS17230	0.49	-2.2
3,765,187	-		LRK54_RS17230	0.49	+0.3
3,765,187	-		LRK54_RS17230	0.49	+1.1
3,765,229	-		LRK54_RS17230	0.52	+3.2
3,765,229	-		LRK54_RS17230	0.52	-0.5
3,765,229	-		LRK54_RS17230	0.52	+0.3
3,765,267	+		LRK54_RS17230	0.55	-1.8
3,765,267	+		LRK54_RS17230	0.55	-0.9
3,765,267	+		LRK54_RS17230	0.55	+0.1
3,765,267	+		LRK54_RS17230	0.55	-0.8
3,765,267	+		LRK54_RS17230	0.55	+0.6
3,765,268	-		LRK54_RS17230	0.55	-1.8
3,765,268	-		LRK54_RS17230	0.55	-0.7
3,765,268	-		LRK54_RS17230	0.55	-1.1
3,765,268	-		LRK54_RS17230	0.55	-1.3
3,765,270	+		LRK54_RS17230	0.55	+0.3
3,765,270	+		LRK54_RS17230	0.55	-1.5
3,765,270	+		LRK54_RS17230	0.55	-0.5
3,765,270	+		LRK54_RS17230	0.55	-0.1
3,765,270	+		LRK54_RS17230	0.55	-0.5
3,765,270	+		LRK54_RS17230	0.55	+0.1
3,765,270	+		LRK54_RS17230	0.55	-0.9
3,765,270	+		LRK54_RS17230	0.55	-0.2
3,765,270	+		LRK54_RS17230	0.55	+0.3
3,765,270	+		LRK54_RS17230	0.55	-2.2
3,765,270	+		LRK54_RS17230	0.55	-0.4
3,765,270	+		LRK54_RS17230	0.55	-1.2
3,765,270	+		LRK54_RS17230	0.55	-1.6
3,765,270	+		LRK54_RS17230	0.55	-1.4
3,765,271	-		LRK54_RS17230	0.55	-0.4
3,765,271	-		LRK54_RS17230	0.55	-0.7
3,765,271	-		LRK54_RS17230	0.55	+0.1
3,765,271	-		LRK54_RS17230	0.55	-0.4
3,765,271	-		LRK54_RS17230	0.55	+1.6
3,765,271	-		LRK54_RS17230	0.55	+0.1
3,765,324	+		LRK54_RS17230	0.59	-1.3
3,765,360	+		LRK54_RS17230	0.61	-0.3
3,765,360	+		LRK54_RS17230	0.61	-1.0
3,765,361	-		LRK54_RS17230	0.61	-0.2
3,765,361	-		LRK54_RS17230	0.61	-1.6
3,765,361	-		LRK54_RS17230	0.61	-0.4
3,765,370	-		LRK54_RS17230	0.62	-1.1
3,765,447	+		LRK54_RS17230	0.67	-0.7
3,765,447	+		LRK54_RS17230	0.67	-2.4
3,765,447	+		LRK54_RS17230	0.67	-1.8
3,765,447	+		LRK54_RS17230	0.67	-1.1
3,765,448	-		LRK54_RS17230	0.67	-1.4
3,765,451	-		LRK54_RS17230	0.67	-2.1
3,765,451	-		LRK54_RS17230	0.67	-1.3
3,765,451	-		LRK54_RS17230	0.67	-0.9
3,765,465	+		LRK54_RS17230	0.68	-0.3
3,765,465	+		LRK54_RS17230	0.68	+0.6
3,765,465	+		LRK54_RS17230	0.68	+0.6
3,765,465	+		LRK54_RS17230	0.68	-1.6
3,765,465	+		LRK54_RS17230	0.68	-0.9
3,765,465	+		LRK54_RS17230	0.68	-1.0
3,765,465	+		LRK54_RS17230	0.68	-0.9
3,765,465	+		LRK54_RS17230	0.68	-0.9
3,765,465	+		LRK54_RS17230	0.68	+1.2
3,765,465	+		LRK54_RS17230	0.68	-1.7
3,765,465	+		LRK54_RS17230	0.68	+0.1
3,765,465	+		LRK54_RS17230	0.68	-0.4
3,765,465	+		LRK54_RS17230	0.68	-1.2
3,765,465	+		LRK54_RS17230	0.68	-0.9
3,765,465	+		LRK54_RS17230	0.68	-1.1
3,765,465	+		LRK54_RS17230	0.68	-1.2
3,765,465	+		LRK54_RS17230	0.68	+1.1
3,765,465	+		LRK54_RS17230	0.68	+0.3
3,765,465	+		LRK54_RS17230	0.68	-1.3
3,765,465	+		LRK54_RS17230	0.68	+0.8
3,765,466	-		LRK54_RS17230	0.68	-0.4
3,765,466	-		LRK54_RS17230	0.68	-0.9
3,765,466	-		LRK54_RS17230	0.68	-2.0
3,765,466	-		LRK54_RS17230	0.68	-2.4
3,765,466	-		LRK54_RS17230	0.68	+0.1
3,765,466	-		LRK54_RS17230	0.68	+0.1
3,765,466	-		LRK54_RS17230	0.68	-0.5
3,765,466	-		LRK54_RS17230	0.68	-0.7
3,765,466	-		LRK54_RS17230	0.68	-0.5
3,765,466	-		LRK54_RS17230	0.68	+0.1
3,765,466	-		LRK54_RS17230	0.68	-0.6
3,765,466	-		LRK54_RS17230	0.68	-1.1
3,765,466	-		LRK54_RS17230	0.68	-0.8
3,765,466	-		LRK54_RS17230	0.68	-1.5
3,765,466	-		LRK54_RS17230	0.68	-1.7
3,765,466	-		LRK54_RS17230	0.68	-0.9
3,765,466	-		LRK54_RS17230	0.68	-0.7
3,765,466	-		LRK54_RS17230	0.68	-1.1
3,765,466	-		LRK54_RS17230	0.68	-1.9
3,765,466	-		LRK54_RS17230	0.68	-1.3
3,765,570	+		LRK54_RS17230	0.75	-0.4
3,765,570	+		LRK54_RS17230	0.75	+0.3
3,765,570	+		LRK54_RS17230	0.75	-1.2
3,765,571	-		LRK54_RS17230	0.75	-1.2
3,765,571	-		LRK54_RS17230	0.75	-1.2
3,765,702	+		LRK54_RS17230	0.84	-0.4
3,765,702	+		LRK54_RS17230	0.84	-2.2
3,765,702	+		LRK54_RS17230	0.84	-1.3
3,765,702	+		LRK54_RS17230	0.84	-0.4
3,765,702	+		LRK54_RS17230	0.84	-0.7
3,765,702	+		LRK54_RS17230	0.84	-0.9
3,765,702	+		LRK54_RS17230	0.84	-0.8
3,765,703	-		LRK54_RS17230	0.84	-3.2
3,765,703	-		LRK54_RS17230	0.84	+2.6
3,765,703	-		LRK54_RS17230	0.84	-1.5
3,765,703	-		LRK54_RS17230	0.84	+0.1
3,765,703	-		LRK54_RS17230	0.84	-1.0
3,765,703	-		LRK54_RS17230	0.84	-1.6
3,765,705	+		LRK54_RS17230	0.85	-1.9
3,765,705	+		LRK54_RS17230	0.85	+0.6
3,765,705	+		LRK54_RS17230	0.85	-1.1
3,765,706	-		LRK54_RS17230	0.85	-0.7
3,765,706	-		LRK54_RS17230	0.85	-1.9
3,765,706	-		LRK54_RS17230	0.85	+0.6
3,765,706	-		LRK54_RS17230	0.85	-0.5
3,765,706	-		LRK54_RS17230	0.85	-0.5
3,765,706	-		LRK54_RS17230	0.85	+0.1
3,765,706	-		LRK54_RS17230	0.85	-0.5
3,765,837	+				+2.2
3,765,837	+				+2.1
3,765,837	+				-1.3
3,765,912	+				-0.8
3,765,912	+				-1.4
3,765,912	+				-1.6
3,765,912	+				-2.5
3,765,912	+				-0.8
3,765,913	-				+1.1
3,765,913	-				-0.6
3,765,913	-				+1.3
3,765,913	-				-1.2
3,765,913	-				-1.1
3,765,913	-				-0.8
3,765,913	-				-1.1
3,765,913	-				-0.8
3,765,913	-				-1.4
3,765,913	-				-1.4
3,765,913	-				-0.9
3,765,913	-				+1.1
3,765,913	-				-1.4
3,765,913	-				+0.3
3,765,913	-				-1.2
3,765,915	+				-0.9
3,765,915	+				-1.9
3,765,915	+				-1.8
3,765,915	+				-1.8
3,765,916	-				+1.1
3,765,916	-				-0.2
3,765,916	-				-2.1
3,765,949	+				+1.6
3,765,949	+				-2.2
3,765,949	+				-0.7
3,765,949	+				-2.2
3,765,949	+				+1.1
3,765,950	-				+0.2
3,765,950	-				+0.9
3,765,950	-				+0.6
3,765,950	-				+0.4
3,765,950	-				-1.5
3,765,950	-				-1.7
3,765,950	-				+1.1
3,765,950	-				+0.1
3,765,950	-				+0.2
3,765,950	-				-0.5
3,765,950	-				+1.0
3,765,950	-				-0.4
3,765,950	-				+0.6
3,765,950	-				-0.6
3,765,950	-				-0.1
3,765,958	-				-1.3
3,765,958	-				-0.2
3,765,958	-				+0.3
3,765,958	-				+0.6
3,765,958	-				-1.1
3,765,958	-				-0.7
3,765,958	-				-1.1
3,765,958	-				+0.1
3,765,958	-				-1.5
3,765,976	+				-0.9
3,765,976	+				+0.1
3,765,976	+				-2.3
3,765,976	+				-1.1
3,765,976	+				-1.3
3,765,976	+				+1.6
3,765,976	+				+1.1
3,765,976	+				+0.6
3,765,977	-				-1.0
3,765,977	-				-1.1
3,765,977	-				-0.9
3,765,977	-				+0.5
3,765,977	-				-0.9
3,765,977	-				+0.1
3,765,977	-				+0.8
3,765,977	-				-0.2
3,765,977	-				-1.1
3,765,977	-				-1.1
3,765,977	-				+0.1
3,765,977	-				+0.2
3,765,977	-				+0.9
3,765,977	-				-0.2
3,765,977	-				+1.5
3,765,977	-				-1.2
3,765,977	-				-0.8
3,765,977	-				-0.2
3,765,977	-				-0.4
3,766,035	+		LRK54_RS17235	0.18	+1.1
3,766,035	+		LRK54_RS17235	0.18	+1.1
3,766,035	+		LRK54_RS17235	0.18	-0.0
3,766,035	+		LRK54_RS17235	0.18	-1.4
3,766,035	+		LRK54_RS17235	0.18	+0.1
3,766,035	+		LRK54_RS17235	0.18	+0.1
3,766,035	+		LRK54_RS17235	0.18	+1.3
3,766,035	+		LRK54_RS17235	0.18	-3.0
3,766,035	+		LRK54_RS17235	0.18	+0.3
3,766,035	+		LRK54_RS17235	0.18	-0.4
3,766,035	+		LRK54_RS17235	0.18	-0.9
3,766,036	-		LRK54_RS17235	0.18	-0.7
3,766,036	-		LRK54_RS17235	0.18	-1.2
3,766,036	-		LRK54_RS17235	0.18	-0.5
3,766,036	-		LRK54_RS17235	0.18	-1.3
3,766,036	-		LRK54_RS17235	0.18	+0.3
3,766,036	-		LRK54_RS17235	0.18	+0.1
3,766,036	-		LRK54_RS17235	0.18	-0.6
3,766,036	-		LRK54_RS17235	0.18	+0.4
3,766,036	-		LRK54_RS17235	0.18	+0.6
3,766,036	-		LRK54_RS17235	0.18	-0.2
3,766,036	-		LRK54_RS17235	0.18	+0.4
3,766,036	-		LRK54_RS17235	0.18	-0.9
3,766,036	-		LRK54_RS17235	0.18	-0.4
3,766,036	-		LRK54_RS17235	0.18	-1.9
3,766,036	-		LRK54_RS17235	0.18	-2.2
3,766,036	-		LRK54_RS17235	0.18	-0.4
3,766,175	+		LRK54_RS17235	0.81	+0.9
3,766,176	-		LRK54_RS17235	0.81	-0.7