Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS10665

Experiment: R2A with nitrite 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 50 mM
2,359,381	+				+0.0
2,359,381	+				-2.6
2,359,381	+				-0.3
2,359,381	+				-1.1
2,359,381	+				-0.5
2,359,382	-				-1.7
2,359,382	-				+0.6
2,359,382	-				-1.7
2,359,382	-				-1.0
2,359,382	-				+0.1
2,359,382	-				-2.8
2,359,382	-				-1.8
2,359,382	-				+0.9
2,359,382	-				-2.0
2,359,399	+				-0.2
2,359,399	+				-2.4
2,359,399	+				-1.8
2,359,399	+				-0.1
2,359,399	+				+0.1
2,359,399	+				-0.9
2,359,399	+				-0.5
2,359,399	+				-0.9
2,359,399	+				+1.2
2,359,399	+				+0.2
2,359,399	+				-1.7
2,359,399	+				-1.5
2,359,399	+				-1.7
2,359,399	+				-1.0
2,359,399	+				-0.8
2,359,399	+				-0.8
2,359,399	+				-0.5
2,359,399	+				-1.2
2,359,400	-				-1.4
2,359,400	-				-0.5
2,359,400	-				+1.2
2,359,400	-				-1.5
2,359,400	-				+1.0
2,359,400	-				+0.1
2,359,400	-				-0.4
2,359,400	-				-0.1
2,359,400	-				+1.5
2,359,400	-				-0.4
2,359,400	-				+0.1
2,359,400	-				+0.2
2,359,400	-				-0.9
2,359,400	-				-1.6
2,359,400	-				-0.9
2,359,400	-				-0.1
2,359,400	-				-1.2
2,359,668	+				-0.0
2,359,668	+				+1.2
2,359,669	-				+0.6
2,359,669	-				-0.4
2,359,669	-				-0.9
2,359,669	-				+0.7
2,360,035	+		LRK54_RS10660	0.75	+2.0
2,360,035	+		LRK54_RS10660	0.75	-0.9
2,360,036	-		LRK54_RS10660	0.75	+1.1
2,360,187	-				-0.1
2,360,442	+		LRK54_RS10665	0.14	-1.7
2,360,442	+		LRK54_RS10665	0.14	-0.9
2,360,442	+		LRK54_RS10665	0.14	-0.9
2,360,442	+		LRK54_RS10665	0.14	-1.7
2,360,442	+		LRK54_RS10665	0.14	-1.3
2,360,443	-		LRK54_RS10665	0.15	-0.7
2,360,443	-		LRK54_RS10665	0.15	-1.9
2,360,443	-		LRK54_RS10665	0.15	-0.9
2,360,443	-		LRK54_RS10665	0.15	-2.0
2,360,443	-		LRK54_RS10665	0.15	-2.2
2,360,443	-		LRK54_RS10665	0.15	-0.8
2,360,522	-		LRK54_RS10665	0.20	-1.2
2,360,598	+		LRK54_RS10665	0.26	+0.2
2,360,598	+		LRK54_RS10665	0.26	-0.2
2,360,598	+		LRK54_RS10665	0.26	-1.9
2,360,598	+		LRK54_RS10665	0.26	-0.8
2,360,598	+		LRK54_RS10665	0.26	-1.4
2,360,598	+		LRK54_RS10665	0.26	-0.8
2,360,598	+		LRK54_RS10665	0.26	-1.9
2,360,599	-		LRK54_RS10665	0.26	+0.6
2,360,599	-		LRK54_RS10665	0.26	+0.1
2,360,599	-		LRK54_RS10665	0.26	-0.8
2,360,599	-		LRK54_RS10665	0.26	+1.8
2,360,599	-		LRK54_RS10665	0.26	+0.2
2,360,599	-		LRK54_RS10665	0.26	-1.4
2,360,599	-		LRK54_RS10665	0.26	+0.4
2,360,599	-		LRK54_RS10665	0.26	-0.4
2,360,640	+		LRK54_RS10665	0.29	+0.6
2,360,640	+		LRK54_RS10665	0.29	-0.4
2,360,641	-		LRK54_RS10665	0.29	-0.9
2,360,718	+		LRK54_RS10665	0.34	-2.9
2,360,718	+		LRK54_RS10665	0.34	-1.1
2,360,718	+		LRK54_RS10665	0.34	-2.1
2,360,718	+		LRK54_RS10665	0.34	-0.5
2,360,718	+		LRK54_RS10665	0.34	-2.5
2,360,719	-		LRK54_RS10665	0.34	-1.1
2,360,719	-		LRK54_RS10665	0.34	+0.2
2,360,719	-		LRK54_RS10665	0.34	-0.6
2,360,719	-		LRK54_RS10665	0.34	-1.4
2,360,719	-		LRK54_RS10665	0.34	-2.3
2,360,719	-		LRK54_RS10665	0.34	-2.5
2,360,719	-		LRK54_RS10665	0.34	-0.1
2,360,719	-		LRK54_RS10665	0.34	-1.6
2,360,745	+		LRK54_RS10665	0.36	+0.2
2,360,745	+		LRK54_RS10665	0.36	-0.1
2,360,745	+		LRK54_RS10665	0.36	-1.7
2,360,745	+		LRK54_RS10665	0.36	-0.4
2,360,745	+		LRK54_RS10665	0.36	-2.5
2,360,745	+		LRK54_RS10665	0.36	-1.5
2,360,745	+		LRK54_RS10665	0.36	-1.2
2,360,745	+		LRK54_RS10665	0.36	-1.2
2,360,745	+		LRK54_RS10665	0.36	+0.6
2,360,745	+		LRK54_RS10665	0.36	+0.3
2,360,745	+		LRK54_RS10665	0.36	-1.9
2,360,745	+		LRK54_RS10665	0.36	-1.2
2,360,746	-		LRK54_RS10665	0.36	+1.9
2,360,746	-		LRK54_RS10665	0.36	-3.9
2,360,746	-		LRK54_RS10665	0.36	-0.5
2,360,746	-		LRK54_RS10665	0.36	-0.8
2,360,746	-		LRK54_RS10665	0.36	-0.1
2,360,746	-		LRK54_RS10665	0.36	-2.6
2,360,781	+		LRK54_RS10665	0.39	-1.1
2,360,949	+		LRK54_RS10665	0.51	-1.9
2,360,949	+		LRK54_RS10665	0.51	-0.8
2,360,949	+		LRK54_RS10665	0.51	-0.3
2,360,949	+		LRK54_RS10665	0.51	-0.5
2,360,949	+		LRK54_RS10665	0.51	-0.5
2,360,949	+		LRK54_RS10665	0.51	-0.9
2,360,949	+		LRK54_RS10665	0.51	-0.4
2,360,950	-		LRK54_RS10665	0.51	-1.2
2,360,950	-		LRK54_RS10665	0.51	-1.1
2,360,950	-		LRK54_RS10665	0.51	-2.6
2,360,950	-		LRK54_RS10665	0.51	-1.1
2,361,093	+		LRK54_RS10665	0.61	-0.3
2,361,093	+		LRK54_RS10665	0.61	-2.1
2,361,093	+		LRK54_RS10665	0.61	-2.2
2,361,093	+		LRK54_RS10665	0.61	-0.7
2,361,093	+		LRK54_RS10665	0.61	-1.4
2,361,093	+		LRK54_RS10665	0.61	-0.7
2,361,093	+		LRK54_RS10665	0.61	-1.8
2,361,094	-		LRK54_RS10665	0.61	-2.4
2,361,094	-		LRK54_RS10665	0.61	-1.7
2,361,094	-		LRK54_RS10665	0.61	+2.8
2,361,094	-		LRK54_RS10665	0.61	-0.9
2,361,094	-		LRK54_RS10665	0.61	-2.4
2,361,094	-		LRK54_RS10665	0.61	-0.6
2,361,094	-		LRK54_RS10665	0.61	-1.9
2,361,094	-		LRK54_RS10665	0.61	-0.1
2,361,195	+		LRK54_RS10665	0.69	+1.8
2,361,195	+		LRK54_RS10665	0.69	-0.9
2,361,195	+		LRK54_RS10665	0.69	+0.6
2,361,195	+		LRK54_RS10665	0.69	+1.0
2,361,195	+		LRK54_RS10665	0.69	-1.0
2,361,195	+		LRK54_RS10665	0.69	+0.2
2,361,195	+		LRK54_RS10665	0.69	-1.1
2,361,195	+		LRK54_RS10665	0.69	-1.3
2,361,195	+		LRK54_RS10665	0.69	-1.8
2,361,195	+		LRK54_RS10665	0.69	-0.9
2,361,195	+		LRK54_RS10665	0.69	-0.4
2,361,195	+		LRK54_RS10665	0.69	-0.1
2,361,195	+		LRK54_RS10665	0.69	+0.2
2,361,195	+		LRK54_RS10665	0.69	-1.3
2,361,196	-		LRK54_RS10665	0.69	-1.9
2,361,196	-		LRK54_RS10665	0.69	-1.2
2,361,196	-		LRK54_RS10665	0.69	-1.9
2,361,196	-		LRK54_RS10665	0.69	-2.2
2,361,196	-		LRK54_RS10665	0.69	-1.7
2,361,196	-		LRK54_RS10665	0.69	-0.4
2,361,196	-		LRK54_RS10665	0.69	-1.4
2,361,196	-		LRK54_RS10665	0.69	-2.1
2,361,240	+		LRK54_RS10665	0.72	-1.7
2,361,240	+		LRK54_RS10665	0.72	-1.7
2,361,240	+		LRK54_RS10665	0.72	-1.5
2,361,240	+		LRK54_RS10665	0.72	-1.2
2,361,240	+		LRK54_RS10665	0.72	-1.1
2,361,240	+		LRK54_RS10665	0.72	-1.4
2,361,240	+		LRK54_RS10665	0.72	-1.9
2,361,240	+		LRK54_RS10665	0.72	-0.8
2,361,240	+		LRK54_RS10665	0.72	-0.1
2,361,240	+		LRK54_RS10665	0.72	-1.2
2,361,240	+		LRK54_RS10665	0.72	-1.2
2,361,240	+		LRK54_RS10665	0.72	-1.8
2,361,241	-		LRK54_RS10665	0.72	-1.1
2,361,241	-		LRK54_RS10665	0.72	-0.9
2,361,241	-		LRK54_RS10665	0.72	-3.1
2,361,241	-		LRK54_RS10665	0.72	+1.2
2,361,246	+		LRK54_RS10665	0.72	-1.4
2,361,246	+		LRK54_RS10665	0.72	-2.4
2,361,246	+		LRK54_RS10665	0.72	-0.1
2,361,246	+		LRK54_RS10665	0.72	-2.3
2,361,246	+		LRK54_RS10665	0.72	-0.4
2,361,246	+		LRK54_RS10665	0.72	-2.1
2,361,246	+		LRK54_RS10665	0.72	-1.1
2,361,246	+		LRK54_RS10665	0.72	-1.4
2,361,246	+		LRK54_RS10665	0.72	-0.8
2,361,246	+		LRK54_RS10665	0.72	-0.0
2,361,246	+		LRK54_RS10665	0.72	-0.9
2,361,247	-		LRK54_RS10665	0.72	-0.9
2,361,247	-		LRK54_RS10665	0.72	-2.5
2,361,247	-		LRK54_RS10665	0.72	-0.2
2,361,247	-		LRK54_RS10665	0.72	-3.1
2,361,247	-		LRK54_RS10665	0.72	-2.5
2,361,247	-		LRK54_RS10665	0.72	+1.0
2,361,247	-		LRK54_RS10665	0.72	-1.9
2,361,315	+		LRK54_RS10665	0.77	-1.4
2,361,315	+		LRK54_RS10665	0.77	-0.0
2,361,315	+		LRK54_RS10665	0.77	-0.3
2,361,315	+		LRK54_RS10665	0.77	-1.8
2,361,315	+		LRK54_RS10665	0.77	-3.0
2,361,315	+		LRK54_RS10665	0.77	-1.6
2,361,315	+		LRK54_RS10665	0.77	-0.3
2,361,315	+		LRK54_RS10665	0.77	-1.6
2,361,315	+		LRK54_RS10665	0.77	-1.4
2,361,315	+		LRK54_RS10665	0.77	-1.6
2,361,315	+		LRK54_RS10665	0.77	-1.7
2,361,315	+		LRK54_RS10665	0.77	-0.7
2,361,315	+		LRK54_RS10665	0.77	-2.1
2,361,315	+		LRK54_RS10665	0.77	-0.7
2,361,315	+		LRK54_RS10665	0.77	-1.8
2,361,315	+		LRK54_RS10665	0.77	+1.0
2,361,316	-		LRK54_RS10665	0.77	-2.1
2,361,316	-		LRK54_RS10665	0.77	-1.1
2,361,316	-		LRK54_RS10665	0.77	-1.5
2,361,316	-		LRK54_RS10665	0.77	-2.1
2,361,316	-		LRK54_RS10665	0.77	-1.7
2,361,316	-		LRK54_RS10665	0.77	+0.2
2,361,316	-		LRK54_RS10665	0.77	-1.2
2,361,316	-		LRK54_RS10665	0.77	-2.5
2,361,316	-		LRK54_RS10665	0.77	-1.3
2,361,316	-		LRK54_RS10665	0.77	-0.1
2,361,316	-		LRK54_RS10665	0.77	-1.7
2,361,316	-		LRK54_RS10665	0.77	+0.3
2,361,316	-		LRK54_RS10665	0.77	+0.5
2,361,316	-		LRK54_RS10665	0.77	-1.9
2,361,316	-		LRK54_RS10665	0.77	+0.2
2,361,316	-		LRK54_RS10665	0.77	-1.5
2,361,316	-		LRK54_RS10665	0.77	-2.8
2,361,316	-		LRK54_RS10665	0.77	+1.2
2,361,316	-		LRK54_RS10665	0.77	-1.4
2,361,316	-		LRK54_RS10665	0.77	-1.1
2,361,316	-		LRK54_RS10665	0.77	-2.4
2,361,316	-		LRK54_RS10665	0.77	-1.9
2,361,316	-		LRK54_RS10665	0.77	-1.7
2,361,342	+		LRK54_RS10665	0.79	-0.8
2,361,342	+		LRK54_RS10665	0.79	-1.5
2,361,342	+		LRK54_RS10665	0.79	-1.0
2,361,342	+		LRK54_RS10665	0.79	-0.4
2,361,342	+		LRK54_RS10665	0.79	-2.2
2,361,342	+		LRK54_RS10665	0.79	-2.2
2,361,342	+		LRK54_RS10665	0.79	+0.6
2,361,342	+		LRK54_RS10665	0.79	-0.7
2,361,342	+		LRK54_RS10665	0.79	-2.3
2,361,342	+		LRK54_RS10665	0.79	-0.6
2,361,342	+		LRK54_RS10665	0.79	-1.2
2,361,342	+		LRK54_RS10665	0.79	+2.2
2,361,342	+		LRK54_RS10665	0.79	-0.5
2,361,342	+		LRK54_RS10665	0.79	-1.5
2,361,343	-		LRK54_RS10665	0.79	-1.4
2,361,343	-		LRK54_RS10665	0.79	-0.1
2,361,343	-		LRK54_RS10665	0.79	+0.4
2,361,343	-		LRK54_RS10665	0.79	-0.8
2,361,343	-		LRK54_RS10665	0.79	-1.2
2,361,343	-		LRK54_RS10665	0.79	-1.7
2,361,343	-		LRK54_RS10665	0.79	-1.2
2,361,343	-		LRK54_RS10665	0.79	-3.1
2,361,343	-		LRK54_RS10665	0.79	-1.9
2,361,343	-		LRK54_RS10665	0.79	+2.2
2,361,343	-		LRK54_RS10665	0.79	-2.0
2,361,343	-		LRK54_RS10665	0.79	-1.6
2,361,343	-		LRK54_RS10665	0.79	-1.2
2,361,343	-		LRK54_RS10665	0.79	-1.6
2,361,343	-		LRK54_RS10665	0.79	-2.5
2,361,343	-		LRK54_RS10665	0.79	-3.0
2,361,343	-		LRK54_RS10665	0.79	-1.8
2,361,343	-		LRK54_RS10665	0.79	-1.2
2,361,385	+		LRK54_RS10665	0.82	-1.2
2,361,385	+		LRK54_RS10665	0.82	+0.5
2,361,385	+		LRK54_RS10665	0.82	-1.4
2,361,515	-				-0.6
2,361,515	-				-1.9
2,361,630	+				-0.1
2,361,630	+				-0.6
2,361,630	+				-1.0
2,361,631	-				+0.6
2,361,631	-				-0.2
2,361,695	+				+0.1
2,361,696	-				+0.5
2,361,989	+		LRK54_RS10670	0.49	-2.2
2,361,990	-		LRK54_RS10670	0.50	+1.8
2,361,990	-		LRK54_RS10670	0.50	+0.7
2,361,990	-		LRK54_RS10670	0.50	+1.5
2,361,990	-		LRK54_RS10670	0.50	-0.2
2,361,998	+		LRK54_RS10670	0.51	+0.5
2,361,998	+		LRK54_RS10670	0.51	+0.5
2,361,998	+		LRK54_RS10670	0.51	-0.8
2,361,998	+		LRK54_RS10670	0.51	+0.5
2,361,999	-		LRK54_RS10670	0.51	-0.5
2,361,999	-		LRK54_RS10670	0.51	-1.9
2,362,037	+		LRK54_RS10670	0.57	-0.4
2,362,037	+		LRK54_RS10670	0.57	-0.8
2,362,037	+		LRK54_RS10670	0.57	+0.1
2,362,037	+		LRK54_RS10670	0.57	-2.0
2,362,038	-		LRK54_RS10670	0.58	+1.0
2,362,038	-		LRK54_RS10670	0.58	-1.5
2,362,038	-		LRK54_RS10670	0.58	+0.3
2,362,038	-		LRK54_RS10670	0.58	-0.2
2,362,038	-		LRK54_RS10670	0.58	-1.2
2,362,038	-		LRK54_RS10670	0.58	+0.1
2,362,038	-		LRK54_RS10670	0.58	-0.5
2,362,038	-		LRK54_RS10670	0.58	-1.1
2,362,040	+		LRK54_RS10670	0.58	-0.4
2,362,040	+		LRK54_RS10670	0.58	+0.5
2,362,041	-		LRK54_RS10670	0.58	-0.2
2,362,041	-		LRK54_RS10670	0.58	+0.1
2,362,136	+		LRK54_RS10670	0.74	-0.5
2,362,137	-		LRK54_RS10670	0.74	-1.2
2,362,137	-		LRK54_RS10670	0.74	-0.1
2,362,137	-		LRK54_RS10670	0.74	-0.9
2,362,137	-		LRK54_RS10670	0.74	-0.9
2,362,137	-		LRK54_RS10670	0.74	+1.8
2,362,137	-		LRK54_RS10670	0.74	+1.4
2,362,545	+				-0.4
2,362,545	+				-0.5
2,362,545	+				-1.5
2,362,545	+				+0.2
2,362,545	+				-2.2
2,362,545	+				-0.0
2,362,546	-				-0.5
2,362,546	-				-0.7
2,362,546	-				-1.4
2,362,546	-				-0.6
2,362,546	-				+1.2
2,362,546	-				+0.9
2,362,550	+				-1.8
2,362,551	-				-0.1
2,362,590	+				+1.6
2,362,590	+				+0.2
2,362,590	+				+0.0
2,362,590	+				+1.4
2,362,590	+				-1.2
2,362,590	+				-0.4
2,362,590	+				+0.3
2,362,590	+				-0.4
2,362,591	-				-1.4
2,362,591	-				-0.2
2,362,591	-				+0.4