Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09845

Experiment: R2A with nitrite 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 50 mM
2,146,941	-		LRK54_RS09840	0.29	-0.8
2,147,036	+		LRK54_RS09840	0.36	-2.2
2,147,036	+		LRK54_RS09840	0.36	-1.8
2,147,036	+		LRK54_RS09840	0.36	-0.7
2,147,036	+		LRK54_RS09840	0.36	-0.3
2,147,036	+		LRK54_RS09840	0.36	+0.3
2,147,036	+		LRK54_RS09840	0.36	-1.9
2,147,036	+		LRK54_RS09840	0.36	-0.0
2,147,036	+		LRK54_RS09840	0.36	-1.0
2,147,036	+		LRK54_RS09840	0.36	-0.3
2,147,036	+		LRK54_RS09840	0.36	-1.6
2,147,036	+		LRK54_RS09840	0.36	+0.7
2,147,036	+		LRK54_RS09840	0.36	+0.9
2,147,036	+		LRK54_RS09840	0.36	+0.3
2,147,036	+		LRK54_RS09840	0.36	+0.5
2,147,036	+		LRK54_RS09840	0.36	-0.9
2,147,036	+		LRK54_RS09840	0.36	-0.7
2,147,037	-		LRK54_RS09840	0.36	-0.5
2,147,037	-		LRK54_RS09840	0.36	+0.7
2,147,037	-		LRK54_RS09840	0.36	-3.4
2,147,037	-		LRK54_RS09840	0.36	+0.5
2,147,084	+		LRK54_RS09840	0.40	-1.5
2,147,084	+		LRK54_RS09840	0.40	-1.8
2,147,084	+		LRK54_RS09840	0.40	-1.2
2,147,084	+		LRK54_RS09840	0.40	-0.7
2,147,084	+		LRK54_RS09840	0.40	-0.0
2,147,085	-		LRK54_RS09840	0.40	-0.7
2,147,085	-		LRK54_RS09840	0.40	-1.3
2,147,085	-		LRK54_RS09840	0.40	-2.2
2,147,085	-		LRK54_RS09840	0.40	-2.5
2,147,085	-		LRK54_RS09840	0.40	-3.2
2,147,085	-		LRK54_RS09840	0.40	-0.5
2,147,085	-		LRK54_RS09840	0.40	-1.7
2,147,144	+		LRK54_RS09840	0.45	+0.4
2,147,144	+		LRK54_RS09840	0.45	-1.8
2,147,144	+		LRK54_RS09840	0.45	-0.5
2,147,144	+		LRK54_RS09840	0.45	-1.0
2,147,144	+		LRK54_RS09840	0.45	-1.2
2,147,144	+		LRK54_RS09840	0.45	+0.3
2,147,144	+		LRK54_RS09840	0.45	-0.7
2,147,144	+		LRK54_RS09840	0.45	-0.8
2,147,144	+		LRK54_RS09840	0.45	-0.6
2,147,144	+		LRK54_RS09840	0.45	-0.3
2,147,144	+		LRK54_RS09840	0.45	-1.9
2,147,144	+		LRK54_RS09840	0.45	-0.8
2,147,144	+		LRK54_RS09840	0.45	-0.4
2,147,144	+		LRK54_RS09840	0.45	-1.0
2,147,144	+		LRK54_RS09840	0.45	-1.0
2,147,144	+		LRK54_RS09840	0.45	-1.8
2,147,144	+		LRK54_RS09840	0.45	-2.7
2,147,144	+		LRK54_RS09840	0.45	-1.1
2,147,144	+		LRK54_RS09840	0.45	-0.1
2,147,144	+		LRK54_RS09840	0.45	-0.8
2,147,144	+		LRK54_RS09840	0.45	-0.8
2,147,144	+		LRK54_RS09840	0.45	-0.9
2,147,144	+		LRK54_RS09840	0.45	-2.6
2,147,145	-		LRK54_RS09840	0.45	-0.9
2,147,145	-		LRK54_RS09840	0.45	-1.3
2,147,145	-		LRK54_RS09840	0.45	+0.7
2,147,145	-		LRK54_RS09840	0.45	-1.0
2,147,145	-		LRK54_RS09840	0.45	-1.1
2,147,145	-		LRK54_RS09840	0.45	-1.4
2,147,145	-		LRK54_RS09840	0.45	-0.4
2,147,145	-		LRK54_RS09840	0.45	-0.6
2,147,145	-		LRK54_RS09840	0.45	-1.3
2,147,145	-		LRK54_RS09840	0.45	-0.6
2,147,145	-		LRK54_RS09840	0.45	-1.1
2,147,145	-		LRK54_RS09840	0.45	-0.4
2,147,145	-		LRK54_RS09840	0.45	-1.3
2,147,145	-		LRK54_RS09840	0.45	-2.5
2,147,145	-		LRK54_RS09840	0.45	-1.0
2,147,145	-		LRK54_RS09840	0.45	-2.8
2,147,145	-		LRK54_RS09840	0.45	-1.9
2,147,145	-		LRK54_RS09840	0.45	-0.3
2,147,145	-		LRK54_RS09840	0.45	+0.1
2,147,145	-		LRK54_RS09840	0.45	-1.3
2,147,145	-		LRK54_RS09840	0.45	-0.3
2,147,145	-		LRK54_RS09840	0.45	-0.6
2,147,145	-		LRK54_RS09840	0.45	+1.7
2,147,145	-		LRK54_RS09840	0.45	-2.9
2,147,145	-		LRK54_RS09840	0.45	+0.8
2,147,145	-		LRK54_RS09840	0.45	+0.1
2,147,145	-		LRK54_RS09840	0.45	-0.6
2,147,145	-		LRK54_RS09840	0.45	-0.8
2,147,145	-		LRK54_RS09840	0.45	-2.1
2,147,570	+		LRK54_RS09840	0.79	-1.0
2,147,570	+		LRK54_RS09840	0.79	-2.4
2,147,570	+		LRK54_RS09840	0.79	+1.4
2,147,570	+		LRK54_RS09840	0.79	-0.5
2,147,570	+		LRK54_RS09840	0.79	-0.7
2,147,570	+		LRK54_RS09840	0.79	-0.9
2,147,570	+		LRK54_RS09840	0.79	+0.3
2,147,570	+		LRK54_RS09840	0.79	-0.7
2,147,570	+		LRK54_RS09840	0.79	-1.2
2,147,570	+		LRK54_RS09840	0.79	-1.9
2,147,570	+		LRK54_RS09840	0.79	-1.7
2,147,570	+		LRK54_RS09840	0.79	-0.3
2,147,570	+		LRK54_RS09840	0.79	-2.0
2,147,570	+		LRK54_RS09840	0.79	-1.2
2,147,570	+		LRK54_RS09840	0.79	-2.1
2,147,570	+		LRK54_RS09840	0.79	+0.3
2,147,570	+		LRK54_RS09840	0.79	-0.9
2,147,570	+		LRK54_RS09840	0.79	-1.5
2,147,570	+		LRK54_RS09840	0.79	-1.1
2,147,570	+		LRK54_RS09840	0.79	-2.3
2,147,570	+		LRK54_RS09840	0.79	-0.5
2,147,570	+		LRK54_RS09840	0.79	-1.8
2,147,570	+		LRK54_RS09840	0.79	-0.7
2,147,570	+		LRK54_RS09840	0.79	-0.7
2,147,571	-		LRK54_RS09840	0.79	-0.7
2,147,571	-		LRK54_RS09840	0.79	-1.7
2,147,571	-		LRK54_RS09840	0.79	-0.7
2,147,571	-		LRK54_RS09840	0.79	-1.2
2,147,571	-		LRK54_RS09840	0.79	-0.0
2,147,571	-		LRK54_RS09840	0.79	-0.9
2,147,571	-		LRK54_RS09840	0.79	-1.7
2,147,571	-		LRK54_RS09840	0.79	-0.9
2,147,571	-		LRK54_RS09840	0.79	-0.7
2,147,571	-		LRK54_RS09840	0.79	-1.6
2,147,571	-		LRK54_RS09840	0.79	+1.7
2,147,571	-		LRK54_RS09840	0.79	-1.2
2,147,571	-		LRK54_RS09840	0.79	+0.9
2,147,571	-		LRK54_RS09840	0.79	-0.6
2,147,571	-		LRK54_RS09840	0.79	-0.3
2,147,571	-		LRK54_RS09840	0.79	-0.8
2,147,571	-		LRK54_RS09840	0.79	-0.3
2,147,571	-		LRK54_RS09840	0.79	-2.5
2,147,571	-		LRK54_RS09840	0.79	-1.0
2,147,571	-		LRK54_RS09840	0.79	-1.3
2,147,576	+		LRK54_RS09840	0.80	-0.9
2,147,577	-		LRK54_RS09840	0.80	+0.5
2,147,577	-		LRK54_RS09840	0.80	-2.1
2,147,596	+		LRK54_RS09840	0.81	-0.8
2,147,596	+		LRK54_RS09840	0.81	-0.0
2,147,596	+		LRK54_RS09840	0.81	-0.6
2,147,596	+		LRK54_RS09840	0.81	-1.3
2,147,596	+		LRK54_RS09840	0.81	-2.2
2,147,596	+		LRK54_RS09840	0.81	-2.8
2,147,596	+		LRK54_RS09840	0.81	-1.2
2,147,596	+		LRK54_RS09840	0.81	-0.8
2,147,596	+		LRK54_RS09840	0.81	+0.8
2,147,596	+		LRK54_RS09840	0.81	-1.8
2,147,597	-		LRK54_RS09840	0.81	+0.1
2,147,597	-		LRK54_RS09840	0.81	+0.8
2,147,597	-		LRK54_RS09840	0.81	+0.7
2,147,597	-		LRK54_RS09840	0.81	-1.0
2,147,597	-		LRK54_RS09840	0.81	-2.1
2,147,597	-		LRK54_RS09840	0.81	-0.0
2,147,597	-		LRK54_RS09840	0.81	-2.2
2,147,597	-		LRK54_RS09840	0.81	-2.2
2,147,913	+				+0.3
2,147,913	+				-0.1
2,147,913	+				-1.1
2,147,913	+				-1.9
2,147,913	+				+1.7
2,147,913	+				-0.4
2,147,913	+				-0.2
2,147,913	+				+1.0
2,147,913	+				+2.1
2,147,913	+				+0.0
2,147,913	+				+1.3
2,147,913	+				-1.2
2,147,913	+				+0.1
2,147,913	+				-0.3
2,147,913	+				-1.0
2,147,913	+				-1.3
2,147,913	+				+0.3
2,147,913	+				-0.4
2,147,913	+				+2.3
2,147,913	+				+1.0
2,147,913	+				-2.1
2,147,913	+				-0.8
2,147,913	+				+0.4
2,147,913	+				-1.7
2,147,913	+				-0.4
2,147,913	+				-0.8
2,147,913	+				-2.5
2,147,914	-				-1.7
2,147,914	-				-0.2
2,147,914	-				-0.2
2,147,914	-				-1.3
2,147,914	-				-1.2
2,147,914	-				-0.1
2,147,914	-				-0.2
2,147,914	-				-0.9
2,147,914	-				-0.2
2,147,914	-				-1.0
2,147,914	-				-2.6
2,147,914	-				+0.1
2,147,914	-				+0.1
2,147,914	-				+0.5
2,147,914	-				+0.3
2,147,914	-				-1.1
2,147,914	-				+0.7
2,147,914	-				-2.2
2,147,914	-				-0.8
2,147,914	-				-1.9
2,147,914	-				-0.7
2,147,914	-				-0.7
2,147,914	-				-1.2
2,147,914	-				-1.8
2,147,914	-				-1.4
2,147,914	-				-0.6
2,147,914	-				-0.5
2,147,914	-				+0.1
2,147,914	-				+0.4
2,147,914	-				-1.1
2,147,914	-				-0.3
2,147,914	-				+2.0
2,147,914	-				-1.5
2,147,926	+				+0.7
2,147,927	-				-0.5
2,147,927	-				-1.6
2,147,954	+				-0.5
2,147,954	+				-1.1
2,148,082	-				-0.4
2,148,082	-				-0.7
2,148,315	+		LRK54_RS09845	0.12	-0.6
2,148,315	+		LRK54_RS09845	0.12	-1.1
2,148,315	+		LRK54_RS09845	0.12	-1.2
2,148,315	+		LRK54_RS09845	0.12	-2.5
2,148,315	+		LRK54_RS09845	0.12	-0.3
2,148,316	-		LRK54_RS09845	0.12	-1.3
2,148,316	-		LRK54_RS09845	0.12	+0.3
2,148,316	-		LRK54_RS09845	0.12	-0.6
2,148,316	-		LRK54_RS09845	0.12	-2.4
2,148,316	-		LRK54_RS09845	0.12	-0.6
2,148,316	-		LRK54_RS09845	0.12	+1.2
2,148,316	-		LRK54_RS09845	0.12	-0.5
2,148,316	-		LRK54_RS09845	0.12	-1.7
2,148,316	-		LRK54_RS09845	0.12	-1.9
2,148,316	-		LRK54_RS09845	0.12	-0.9
2,148,316	-		LRK54_RS09845	0.12	-1.9
2,148,316	-		LRK54_RS09845	0.12	-0.0
2,148,316	-		LRK54_RS09845	0.12	-0.7
2,148,316	-		LRK54_RS09845	0.12	-0.2
2,148,316	-		LRK54_RS09845	0.12	-0.7
2,148,609	+		LRK54_RS09845	0.21	-1.5
2,148,609	+		LRK54_RS09845	0.21	-0.9
2,148,609	+		LRK54_RS09845	0.21	-0.9
2,148,609	+		LRK54_RS09845	0.21	-2.5
2,148,609	+		LRK54_RS09845	0.21	-1.7
2,148,609	+		LRK54_RS09845	0.21	-0.9
2,148,609	+		LRK54_RS09845	0.21	-1.3
2,148,609	+		LRK54_RS09845	0.21	-2.4
2,148,609	+		LRK54_RS09845	0.21	-3.3
2,148,609	+		LRK54_RS09845	0.21	-2.5
2,148,609	+		LRK54_RS09845	0.21	+1.1
2,148,609	+		LRK54_RS09845	0.21	-3.3
2,148,610	-		LRK54_RS09845	0.21	-1.5
2,148,610	-		LRK54_RS09845	0.21	-0.7
2,148,610	-		LRK54_RS09845	0.21	-1.3
2,148,610	-		LRK54_RS09845	0.21	-1.8
2,148,651	+		LRK54_RS09845	0.22	-2.3
2,148,651	+		LRK54_RS09845	0.22	-0.8
2,148,651	+		LRK54_RS09845	0.22	-0.9
2,148,651	+		LRK54_RS09845	0.22	-2.9
2,148,652	-		LRK54_RS09845	0.22	-0.7
2,148,652	-		LRK54_RS09845	0.22	-0.4
2,148,652	-		LRK54_RS09845	0.22	-0.0
2,148,652	-		LRK54_RS09845	0.22	-1.3
2,148,672	+		LRK54_RS09845	0.23	-0.0
2,148,672	+		LRK54_RS09845	0.23	+0.1
2,148,672	+		LRK54_RS09845	0.23	-2.4
2,148,672	+		LRK54_RS09845	0.23	+1.3
2,148,672	+		LRK54_RS09845	0.23	-2.2
2,148,672	+		LRK54_RS09845	0.23	+0.7
2,148,672	+		LRK54_RS09845	0.23	-1.2
2,148,672	+		LRK54_RS09845	0.23	-1.7
2,148,672	+		LRK54_RS09845	0.23	-1.4
2,148,672	+		LRK54_RS09845	0.23	-1.2
2,148,672	+		LRK54_RS09845	0.23	-1.6
2,148,672	+		LRK54_RS09845	0.23	-0.4
2,148,672	+		LRK54_RS09845	0.23	-2.1
2,148,673	-		LRK54_RS09845	0.23	-0.7
2,148,673	-		LRK54_RS09845	0.23	+0.3
2,148,673	-		LRK54_RS09845	0.23	-0.6
2,148,673	-		LRK54_RS09845	0.23	+0.4
2,148,673	-		LRK54_RS09845	0.23	+0.1
2,148,673	-		LRK54_RS09845	0.23	-1.4
2,148,673	-		LRK54_RS09845	0.23	-1.7
2,148,673	-		LRK54_RS09845	0.23	-1.4
2,148,909	-		LRK54_RS09845	0.30	-0.9
2,148,909	-		LRK54_RS09845	0.30	+0.7
2,149,167	+		LRK54_RS09845	0.38	-0.3
2,149,167	+		LRK54_RS09845	0.38	-1.5
2,149,167	+		LRK54_RS09845	0.38	+0.3
2,149,167	+		LRK54_RS09845	0.38	-0.0
2,149,167	+		LRK54_RS09845	0.38	-1.2
2,149,167	+		LRK54_RS09845	0.38	-0.8
2,149,168	-		LRK54_RS09845	0.38	-0.0
2,149,168	-		LRK54_RS09845	0.38	-0.3
2,149,168	-		LRK54_RS09845	0.38	-0.3
2,149,168	-		LRK54_RS09845	0.38	-1.4
2,149,392	+		LRK54_RS09845	0.45	-0.3
2,149,392	+		LRK54_RS09845	0.45	-0.2
2,149,392	+		LRK54_RS09845	0.45	-1.7
2,149,392	+		LRK54_RS09845	0.45	-0.7
2,149,392	+		LRK54_RS09845	0.45	-0.1
2,149,392	+		LRK54_RS09845	0.45	-1.9
2,149,392	+		LRK54_RS09845	0.45	-3.3
2,149,393	-		LRK54_RS09845	0.45	-2.2
2,149,393	-		LRK54_RS09845	0.45	+0.7
2,149,393	-		LRK54_RS09845	0.45	+0.7
2,149,393	-		LRK54_RS09845	0.45	-3.7
2,149,491	+		LRK54_RS09845	0.48	-0.2
2,149,491	+		LRK54_RS09845	0.48	-0.0
2,149,491	+		LRK54_RS09845	0.48	-0.7
2,149,491	+		LRK54_RS09845	0.48	-0.3
2,149,492	-		LRK54_RS09845	0.48	+1.3
2,149,492	-		LRK54_RS09845	0.48	-1.0
2,149,492	-		LRK54_RS09845	0.48	+0.7
2,149,492	-		LRK54_RS09845	0.48	-1.5
2,149,578	+		LRK54_RS09845	0.51	-0.5
2,149,578	+		LRK54_RS09845	0.51	-2.3
2,149,578	+		LRK54_RS09845	0.51	-2.0
2,149,578	+		LRK54_RS09845	0.51	-1.0
2,149,578	+		LRK54_RS09845	0.51	-2.5
2,149,578	+		LRK54_RS09845	0.51	-1.5
2,149,578	+		LRK54_RS09845	0.51	+1.0
2,149,578	+		LRK54_RS09845	0.51	+1.3
2,149,578	+		LRK54_RS09845	0.51	-0.5
2,149,578	+		LRK54_RS09845	0.51	-0.7
2,149,578	+		LRK54_RS09845	0.51	-2.5
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2,151,847	+		LRK54_RS09850	0.15	-0.4
2,151,847	+		LRK54_RS09850	0.15	+0.3
2,151,847	+		LRK54_RS09850	0.15	-0.9
2,151,847	+		LRK54_RS09850	0.15	-1.5
2,151,847	+		LRK54_RS09850	0.15	-0.6
2,151,847	+		LRK54_RS09850	0.15	-0.7
2,151,848	-		LRK54_RS09850	0.15	+0.7
2,151,848	-		LRK54_RS09850	0.15	+0.5
2,151,848	-		LRK54_RS09850	0.15	+0.4
2,151,848	-		LRK54_RS09850	0.15	-0.1
2,151,848	-		LRK54_RS09850	0.15	-0.2
2,151,848	-		LRK54_RS09850	0.15	-1.1
2,151,848	-		LRK54_RS09850	0.15	-2.4
2,151,848	-		LRK54_RS09850	0.15	-0.4
2,151,848	-		LRK54_RS09850	0.15	+0.7
2,151,848	-		LRK54_RS09850	0.15	+0.3
2,151,848	-		LRK54_RS09850	0.15	-0.6
2,151,848	-		LRK54_RS09850	0.15	-0.2
2,151,848	-		LRK54_RS09850	0.15	-0.3
2,151,848	-		LRK54_RS09850	0.15	-0.0
2,151,848	-		LRK54_RS09850	0.15	-0.3
2,151,848	-		LRK54_RS09850	0.15	+0.5
2,151,848	-		LRK54_RS09850	0.15	-0.3