Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS09045

Experiment: R2A with nitrite 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 50 mM
1,972,882	-		LRK54_RS09035	0.87	-1.3
1,972,885	+		LRK54_RS09035	0.87	-0.2
1,972,885	+		LRK54_RS09035	0.87	+0.5
1,972,885	+		LRK54_RS09035	0.87	-0.8
1,972,885	+		LRK54_RS09035	0.87	-2.7
1,972,885	+		LRK54_RS09035	0.87	+1.9
1,972,885	+		LRK54_RS09035	0.87	-2.4
1,972,885	+		LRK54_RS09035	0.87	+0.8
1,972,885	+		LRK54_RS09035	0.87	+0.3
1,972,886	-		LRK54_RS09035	0.87	+0.5
1,972,886	-		LRK54_RS09035	0.87	-0.6
1,972,886	-		LRK54_RS09035	0.87	+0.1
1,972,886	-		LRK54_RS09035	0.87	-0.7
1,972,895	+		LRK54_RS09035	0.87	-0.0
1,972,895	+		LRK54_RS09035	0.87	-0.6
1,972,895	+		LRK54_RS09035	0.87	-0.0
1,972,895	+		LRK54_RS09035	0.87	+0.3
1,972,895	+		LRK54_RS09035	0.87	+0.8
1,972,895	+		LRK54_RS09035	0.87	-1.4
1,972,896	-		LRK54_RS09035	0.87	-1.1
1,972,896	-		LRK54_RS09035	0.87	-1.6
1,972,896	-		LRK54_RS09035	0.87	-1.1
1,972,896	-		LRK54_RS09035	0.87	-0.7
1,972,896	-		LRK54_RS09035	0.87	+1.5
1,972,896	-		LRK54_RS09035	0.87	+0.8
1,972,897	+		LRK54_RS09035	0.87	-0.7
1,973,055	+				+0.2
1,973,055	+				-0.8
1,973,056	-				-1.1
1,973,087	+				-1.4
1,973,087	+				-0.3
1,973,087	+				-1.1
1,973,087	+				-0.1
1,973,087	+				-0.1
1,973,087	+				-1.2
1,973,087	+				-1.1
1,973,087	+				-0.2
1,973,087	+				+0.8
1,973,088	-				+0.0
1,973,088	-				+0.3
1,973,088	-				-1.1
1,973,088	-				-0.6
1,973,088	-				-0.1
1,973,088	-				+0.7
1,973,088	-				-0.9
1,973,088	-				+0.1
1,973,112	+				-0.7
1,973,112	+				-1.4
1,973,112	+				+0.2
1,973,112	+				-0.5
1,973,112	+				+0.4
1,973,113	-				-0.8
1,973,113	-				-0.1
1,973,113	-				+1.0
1,973,113	-				-0.2
1,973,198	+				+0.3
1,973,198	+				-0.4
1,973,199	-				-0.2
1,973,199	-				-1.2
1,973,199	-				-0.8
1,973,224	-				+0.5
1,973,323	-				+0.1
1,973,393	+		LRK54_RS09040	0.18	+0.9
1,973,393	+		LRK54_RS09040	0.18	-1.0
1,973,394	-		LRK54_RS09040	0.18	-0.7
1,973,401	+		LRK54_RS09040	0.20	-0.4
1,973,401	+		LRK54_RS09040	0.20	-0.4
1,973,402	-		LRK54_RS09040	0.20	+0.2
1,973,402	-		LRK54_RS09040	0.20	+0.1
1,973,402	-		LRK54_RS09040	0.20	-0.1
1,973,402	-		LRK54_RS09040	0.20	+0.5
1,973,402	-		LRK54_RS09040	0.20	+0.0
1,973,402	-		LRK54_RS09040	0.20	+1.3
1,973,402	-		LRK54_RS09040	0.20	-0.0
1,973,402	-		LRK54_RS09040	0.20	-0.5
1,973,402	-		LRK54_RS09040	0.20	-1.4
1,973,412	+		LRK54_RS09040	0.22	+0.5
1,973,444	+		LRK54_RS09040	0.29	-0.3
1,973,445	-		LRK54_RS09040	0.29	-1.9
1,973,460	+		LRK54_RS09040	0.32	-0.8
1,973,460	+		LRK54_RS09040	0.32	-0.5
1,973,461	-		LRK54_RS09040	0.32	-0.4
1,973,594	+		LRK54_RS09040	0.60	-2.1
1,973,594	+		LRK54_RS09040	0.60	-0.9
1,973,595	-		LRK54_RS09040	0.60	-1.6
1,973,595	-		LRK54_RS09040	0.60	-0.6
1,973,602	+		LRK54_RS09040	0.61	-1.0
1,973,603	-		LRK54_RS09040	0.62	-0.8
1,973,668	+		LRK54_RS09040	0.75	-3.1
1,973,716	+		LRK54_RS09040	0.85	-0.7
1,973,717	-		LRK54_RS09040	0.85	+0.4
1,973,734	+		LRK54_RS09040	0.89	-0.2
1,973,734	+		LRK54_RS09040	0.89	-2.1
1,973,735	-		LRK54_RS09040	0.89	-0.5
1,973,735	-		LRK54_RS09040	0.89	+0.6
1,973,788	-				+1.2
1,973,788	-				+0.8
1,973,788	-				-1.4
1,973,788	-				+0.1
1,973,788	-				-1.3
1,973,807	+				-1.0
1,973,807	+				-0.6
1,973,807	+				-0.6
1,973,808	-				-0.9
1,973,808	-				-0.7
1,973,837	+				+0.6
1,973,838	-				-0.8
1,973,985	+		LRK54_RS09045	0.13	+0.5
1,974,008	+		LRK54_RS09045	0.15	-0.6
1,974,008	+		LRK54_RS09045	0.15	+0.4
1,974,008	+		LRK54_RS09045	0.15	+0.8
1,974,008	+		LRK54_RS09045	0.15	-0.7
1,974,008	+		LRK54_RS09045	0.15	-2.2
1,974,008	+		LRK54_RS09045	0.15	+0.8
1,974,009	-		LRK54_RS09045	0.15	+0.8
1,974,009	-		LRK54_RS09045	0.15	-1.3
1,974,009	-		LRK54_RS09045	0.15	-0.3
1,974,009	-		LRK54_RS09045	0.15	+1.2
1,974,009	-		LRK54_RS09045	0.15	-1.4
1,974,009	-		LRK54_RS09045	0.15	-0.4
1,974,124	+		LRK54_RS09045	0.23	-0.5
1,974,124	+		LRK54_RS09045	0.23	-0.3
1,974,124	+		LRK54_RS09045	0.23	+0.3
1,974,125	-		LRK54_RS09045	0.23	-0.4
1,974,144	+		LRK54_RS09045	0.25	+0.5
1,974,144	+		LRK54_RS09045	0.25	-1.0
1,974,145	-		LRK54_RS09045	0.25	-0.3
1,974,145	-		LRK54_RS09045	0.25	-0.4
1,974,286	+		LRK54_RS09045	0.35	-0.1
1,974,286	+		LRK54_RS09045	0.35	-0.4
1,974,286	+		LRK54_RS09045	0.35	-0.9
1,974,287	-		LRK54_RS09045	0.35	+1.1
1,974,287	-		LRK54_RS09045	0.35	+1.6
1,974,287	-		LRK54_RS09045	0.35	-0.7
1,974,287	-		LRK54_RS09045	0.35	-2.9
1,974,287	-		LRK54_RS09045	0.35	-1.3
1,974,355	+		LRK54_RS09045	0.40	-0.9
1,974,355	+		LRK54_RS09045	0.40	+0.3
1,974,355	+		LRK54_RS09045	0.40	+0.2
1,974,355	+		LRK54_RS09045	0.40	-1.2
1,974,355	+		LRK54_RS09045	0.40	-0.8
1,974,356	-		LRK54_RS09045	0.40	-1.0
1,974,356	-		LRK54_RS09045	0.40	-0.9
1,974,356	-		LRK54_RS09045	0.40	-0.3
1,974,356	-		LRK54_RS09045	0.40	-1.0
1,974,404	+		LRK54_RS09045	0.44	-1.0
1,974,405	-		LRK54_RS09045	0.44	-0.4
1,974,405	-		LRK54_RS09045	0.44	-1.7
1,974,451	+		LRK54_RS09045	0.47	+0.3
1,974,493	+		LRK54_RS09045	0.50	+0.3
1,974,493	+		LRK54_RS09045	0.50	+0.2
1,974,494	-		LRK54_RS09045	0.50	-0.2
1,974,494	-		LRK54_RS09045	0.50	-1.9
1,974,494	-		LRK54_RS09045	0.50	+0.2
1,974,557	+		LRK54_RS09045	0.55	-0.3
1,974,558	-		LRK54_RS09045	0.55	-0.7
1,974,558	-		LRK54_RS09045	0.55	-0.9
1,974,618	-		LRK54_RS09045	0.59	+0.3
1,974,618	-		LRK54_RS09045	0.59	+0.0
1,974,620	+		LRK54_RS09045	0.59	+0.5
1,974,620	+		LRK54_RS09045	0.59	+0.0
1,974,620	+		LRK54_RS09045	0.59	-0.2
1,974,620	+		LRK54_RS09045	0.59	-0.8
1,974,620	+		LRK54_RS09045	0.59	-1.4
1,974,620	+		LRK54_RS09045	0.59	+0.4
1,974,621	-		LRK54_RS09045	0.59	-0.1
1,974,621	-		LRK54_RS09045	0.59	-0.5
1,974,621	-		LRK54_RS09045	0.59	-0.7
1,974,621	-		LRK54_RS09045	0.59	-1.1
1,974,621	-		LRK54_RS09045	0.59	-0.6
1,974,668	+		LRK54_RS09045	0.63	-1.0
1,974,669	-		LRK54_RS09045	0.63	-1.6
1,974,775	+		LRK54_RS09045	0.71	-0.8
1,974,802	-		LRK54_RS09045	0.72	-1.2
1,974,827	+		LRK54_RS09045	0.74	-1.4
1,974,827	+		LRK54_RS09045	0.74	+0.9
1,974,827	+		LRK54_RS09045	0.74	-0.6
1,974,827	+		LRK54_RS09045	0.74	-3.1
1,974,827	+		LRK54_RS09045	0.74	+0.2
1,974,828	-		LRK54_RS09045	0.74	+1.2
1,974,828	-		LRK54_RS09045	0.74	+0.6
1,974,828	-		LRK54_RS09045	0.74	-0.9
1,974,860	+		LRK54_RS09045	0.77	+0.5
1,974,860	+		LRK54_RS09045	0.77	-1.0
1,974,861	-		LRK54_RS09045	0.77	-0.3
1,974,861	-		LRK54_RS09045	0.77	+0.0
1,974,910	-		LRK54_RS09045	0.80	+0.1
1,974,912	+		LRK54_RS09045	0.80	-1.1
1,974,912	+		LRK54_RS09045	0.80	+0.5
1,974,982	+		LRK54_RS09045	0.86	-1.1
1,974,982	+		LRK54_RS09045	0.86	-0.2
1,974,982	+		LRK54_RS09045	0.86	-0.5
1,974,982	+		LRK54_RS09045	0.86	-1.1
1,974,983	-		LRK54_RS09045	0.86	+0.2
1,975,077	-				+0.5
1,975,077	-				+0.2
1,975,235	+				+0.9
1,975,236	-				-0.3
1,975,236	-				-1.7
1,975,302	+				-2.0
1,975,302	+				-0.1
1,975,303	-				-0.9
1,975,303	-				-1.5
1,975,403	+				+0.5
1,975,404	-				-3.3
1,975,404	-				+0.6
1,975,588	+		LRK54_RS09050	0.22	-0.7
1,975,589	-		LRK54_RS09050	0.23	-1.0
1,975,589	-		LRK54_RS09050	0.23	+0.3
1,975,589	-		LRK54_RS09050	0.23	-0.9
1,975,730	+		LRK54_RS09050	0.33	+1.9
1,975,730	+		LRK54_RS09050	0.33	+0.3
1,975,730	+		LRK54_RS09050	0.33	+0.4
1,975,730	+		LRK54_RS09050	0.33	+1.1
1,975,731	-		LRK54_RS09050	0.33	+0.4
1,975,731	-		LRK54_RS09050	0.33	-0.1
1,975,731	-		LRK54_RS09050	0.33	+1.8
1,975,731	-		LRK54_RS09050	0.33	+0.8
1,975,731	-		LRK54_RS09050	0.33	+0.0
1,975,731	-		LRK54_RS09050	0.33	+1.3
1,975,731	-		LRK54_RS09050	0.33	+0.3
1,975,731	-		LRK54_RS09050	0.33	+0.0
1,975,731	-		LRK54_RS09050	0.33	-0.8
1,975,751	+		LRK54_RS09050	0.35	+0.5
1,975,751	+		LRK54_RS09050	0.35	-1.0
1,975,752	-		LRK54_RS09050	0.35	-0.8
1,975,752	-		LRK54_RS09050	0.35	-0.9
1,975,752	-		LRK54_RS09050	0.35	+0.8
1,975,825	+		LRK54_RS09050	0.41	+0.2
1,975,825	+		LRK54_RS09050	0.41	-0.7
1,975,826	-		LRK54_RS09050	0.41	-0.2
1,975,826	-		LRK54_RS09050	0.41	-0.9
1,976,115	+		LRK54_RS09050	0.63	-0.2
1,976,115	+		LRK54_RS09050	0.63	+0.9
1,976,115	+		LRK54_RS09050	0.63	-0.5
1,976,115	+		LRK54_RS09050	0.63	-3.1
1,976,116	-		LRK54_RS09050	0.63	-1.0