Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05635

Experiment: R2A with nitrite 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 50 mM
1,213,188	+		LRK54_RS05630	0.46	+0.3
1,213,188	+		LRK54_RS05630	0.46	+1.0
1,213,188	+		LRK54_RS05630	0.46	+0.3
1,213,188	+		LRK54_RS05630	0.46	-0.3
1,213,188	+		LRK54_RS05630	0.46	-0.3
1,213,188	+		LRK54_RS05630	0.46	-2.1
1,213,188	+		LRK54_RS05630	0.46	-0.5
1,213,188	+		LRK54_RS05630	0.46	+0.3
1,213,188	+		LRK54_RS05630	0.46	-0.9
1,213,188	+		LRK54_RS05630	0.46	-3.6
1,213,189	-		LRK54_RS05630	0.46	-1.5
1,213,189	-		LRK54_RS05630	0.46	-1.0
1,213,189	-		LRK54_RS05630	0.46	+0.7
1,213,189	-		LRK54_RS05630	0.46	-1.9
1,213,189	-		LRK54_RS05630	0.46	-2.0
1,213,234	+		LRK54_RS05630	0.54	-0.8
1,213,234	+		LRK54_RS05630	0.54	-1.8
1,213,234	+		LRK54_RS05630	0.54	-0.7
1,213,234	+		LRK54_RS05630	0.54	-2.2
1,213,234	+		LRK54_RS05630	0.54	-0.3
1,213,234	+		LRK54_RS05630	0.54	-1.3
1,213,234	+		LRK54_RS05630	0.54	-0.0
1,213,234	+		LRK54_RS05630	0.54	-0.5
1,213,234	+		LRK54_RS05630	0.54	-0.5
1,213,235	-		LRK54_RS05630	0.55	-0.5
1,213,235	-		LRK54_RS05630	0.55	+0.7
1,213,235	-		LRK54_RS05630	0.55	-2.3
1,213,235	-		LRK54_RS05630	0.55	-1.5
1,213,235	-		LRK54_RS05630	0.55	-0.5
1,213,235	-		LRK54_RS05630	0.55	-2.2
1,213,240	+		LRK54_RS05630	0.56	-2.3
1,213,241	-		LRK54_RS05630	0.56	-2.4
1,213,247	-		LRK54_RS05630	0.57	-1.5
1,213,318	+		LRK54_RS05630	0.70	-1.1
1,213,319	-		LRK54_RS05630	0.70	-1.1
1,213,319	-		LRK54_RS05630	0.70	+0.1
1,213,319	-		LRK54_RS05630	0.70	-1.6
1,213,319	-		LRK54_RS05630	0.70	-2.8
1,213,321	+		LRK54_RS05630	0.71	-0.5
1,213,321	+		LRK54_RS05630	0.71	+1.6
1,213,321	+		LRK54_RS05630	0.71	-1.6
1,213,322	-		LRK54_RS05630	0.71	-0.7
1,213,322	-		LRK54_RS05630	0.71	-0.5
1,213,322	-		LRK54_RS05630	0.71	-2.4
1,213,322	-		LRK54_RS05630	0.71	-0.9
1,213,322	-		LRK54_RS05630	0.71	-0.5
1,213,322	-		LRK54_RS05630	0.71	-1.6
1,213,463	+				-0.5
1,213,485	+				-1.1
1,213,485	+				-2.1
1,213,485	+				-1.6
1,213,485	+				+2.3
1,213,486	-				-1.6
1,213,486	-				+0.3
1,213,486	-				-0.3
1,213,486	-				-2.2
1,213,486	-				-2.6
1,213,486	-				-0.0
1,213,486	-				-2.0
1,213,532	+				-1.7
1,213,532	+				-0.9
1,213,532	+				-1.5
1,213,532	+				-1.9
1,213,532	+				+0.7
1,213,532	+				-2.3
1,213,532	+				-1.4
1,213,532	+				+0.7
1,213,532	+				-2.6
1,213,532	+				-1.8
1,213,533	-				-0.7
1,213,533	-				-1.3
1,213,533	-				+0.2
1,213,533	-				-1.1
1,213,533	-				-1.1
1,213,533	-				-1.1
1,213,533	-				-1.3
1,213,533	-				-1.5
1,213,533	-				-0.8
1,213,561	+				-2.0
1,213,562	-				-0.8
1,213,950	+		LRK54_RS05635	0.41	-0.5
1,213,950	+		LRK54_RS05635	0.41	-2.2
1,213,951	-		LRK54_RS05635	0.41	-1.5
1,213,951	-		LRK54_RS05635	0.41	-0.5
1,213,951	-		LRK54_RS05635	0.41	-0.0
1,213,951	-		LRK54_RS05635	0.41	-0.1
1,213,951	-		LRK54_RS05635	0.41	-0.3
1,213,951	-		LRK54_RS05635	0.41	-1.1
1,213,951	-		LRK54_RS05635	0.41	-2.6
1,213,951	-		LRK54_RS05635	0.41	-0.5
1,213,951	-		LRK54_RS05635	0.41	-0.3
1,213,951	-		LRK54_RS05635	0.41	-2.4
1,213,951	-		LRK54_RS05635	0.41	-1.6
1,213,951	-		LRK54_RS05635	0.41	-0.5
1,213,951	-		LRK54_RS05635	0.41	-0.7
1,213,951	-		LRK54_RS05635	0.41	+0.7
1,213,951	-		LRK54_RS05635	0.41	-0.5
1,213,951	-		LRK54_RS05635	0.41	-2.9
1,214,031	+		LRK54_RS05635	0.49	-1.7
1,214,031	+		LRK54_RS05635	0.49	-2.6
1,214,031	+		LRK54_RS05635	0.49	+2.3
1,214,031	+		LRK54_RS05635	0.49	-1.5
1,214,032	-		LRK54_RS05635	0.49	-0.7
1,214,032	-		LRK54_RS05635	0.49	-1.3
1,214,070	+		LRK54_RS05635	0.53	-0.9
1,214,121	+		LRK54_RS05635	0.58	-0.3
1,214,121	+		LRK54_RS05635	0.58	+1.9
1,214,121	+		LRK54_RS05635	0.58	+1.0
1,214,121	+		LRK54_RS05635	0.58	-2.4
1,214,121	+		LRK54_RS05635	0.58	-0.0
1,214,122	-		LRK54_RS05635	0.58	-0.5
1,214,122	-		LRK54_RS05635	0.58	-2.5
1,214,122	-		LRK54_RS05635	0.58	-0.9
1,214,122	-		LRK54_RS05635	0.58	-2.5
1,214,142	+		LRK54_RS05635	0.60	-2.5
1,214,142	+		LRK54_RS05635	0.60	-1.3
1,214,142	+		LRK54_RS05635	0.60	-2.1
1,214,142	+		LRK54_RS05635	0.60	-1.1
1,214,142	+		LRK54_RS05635	0.60	-0.6
1,214,143	-		LRK54_RS05635	0.60	-2.0
1,214,143	-		LRK54_RS05635	0.60	-1.9
1,214,143	-		LRK54_RS05635	0.60	-0.0
1,214,283	+		LRK54_RS05635	0.73	+0.3
1,214,283	+		LRK54_RS05635	0.73	-1.9
1,214,284	-		LRK54_RS05635	0.73	+1.9
1,214,284	-		LRK54_RS05635	0.73	-1.6
1,214,284	-		LRK54_RS05635	0.73	-0.5
1,214,304	+		LRK54_RS05635	0.75	-0.5
1,214,304	+		LRK54_RS05635	0.75	-2.0
1,214,304	+		LRK54_RS05635	0.75	-2.7
1,214,304	+		LRK54_RS05635	0.75	-0.7
1,214,305	-		LRK54_RS05635	0.75	-0.5
1,214,305	-		LRK54_RS05635	0.75	-1.8
1,214,305	-		LRK54_RS05635	0.75	-0.3
1,214,305	-		LRK54_RS05635	0.75	-2.1
1,214,305	-		LRK54_RS05635	0.75	-2.0
1,214,314	+		LRK54_RS05635	0.76	-3.3
1,214,315	-		LRK54_RS05635	0.76	-3.1
1,214,315	-		LRK54_RS05635	0.76	-2.2
1,214,436	+		LRK54_RS05635	0.88	-1.5
1,214,436	+		LRK54_RS05635	0.88	-1.1
1,214,437	-		LRK54_RS05635	0.88	-2.7
1,214,437	-		LRK54_RS05635	0.88	-1.6
1,214,437	-		LRK54_RS05635	0.88	-0.5
1,214,443	-		LRK54_RS05635	0.89	-0.1
1,214,478	+				-2.5
1,214,478	+				-0.0
1,214,479	-				+0.2
1,214,479	-				-1.0
1,214,479	-				-1.7
1,214,491	-				-3.3
1,214,491	-				-1.3
1,214,491	-				-2.4
1,214,491	-				+0.3
1,214,498	+				-0.0
1,214,498	+				+0.6
1,214,498	+				-2.3
1,214,498	+				-2.5
1,214,498	+				-1.1
1,214,499	-				-1.0
1,214,499	-				-0.9
1,214,499	-				-1.7
1,214,499	-				-2.4
1,214,499	-				-2.2
1,214,499	-				-1.6
1,214,579	+				-1.6
1,214,594	+				-0.5
1,214,611	+				-0.9
1,214,611	+				-0.5
1,214,611	+				-0.7
1,214,611	+				-1.1
1,214,611	+				+0.7
1,214,611	+				-0.3
1,214,611	+				+0.5
1,214,612	-				-0.8
1,214,612	-				-2.9
1,214,612	-				+1.6
1,214,612	-				+2.3
1,214,612	-				+0.1
1,214,629	+				-0.1
1,214,630	-				-1.0
1,214,755	+		LRK54_RS05640	0.21	+0.3
1,214,755	+		LRK54_RS05640	0.21	+0.7
1,214,755	+		LRK54_RS05640	0.21	+1.0
1,214,755	+		LRK54_RS05640	0.21	-0.9
1,214,756	-		LRK54_RS05640	0.21	-1.9
1,214,783	+		LRK54_RS05640	0.24	-0.9
1,214,783	+		LRK54_RS05640	0.24	-1.1
1,214,783	+		LRK54_RS05640	0.24	-0.3
1,214,783	+		LRK54_RS05640	0.24	-0.7
1,214,784	-		LRK54_RS05640	0.24	+0.5
1,214,784	-		LRK54_RS05640	0.24	+0.1
1,214,784	-		LRK54_RS05640	0.24	-0.6
1,214,807	+		LRK54_RS05640	0.26	-1.6
1,214,808	-		LRK54_RS05640	0.26	-0.5
1,214,874	+		LRK54_RS05640	0.33	-0.0
1,215,006	+		LRK54_RS05640	0.47	-2.4
1,215,007	-		LRK54_RS05640	0.47	+0.3
1,215,007	-		LRK54_RS05640	0.47	-0.3
1,215,038	+		LRK54_RS05640	0.50	-0.1
1,215,038	+		LRK54_RS05640	0.50	-2.0
1,215,038	+		LRK54_RS05640	0.50	-0.7
1,215,038	+		LRK54_RS05640	0.50	-0.7
1,215,038	+		LRK54_RS05640	0.50	-1.5
1,215,038	+		LRK54_RS05640	0.50	+0.3
1,215,038	+		LRK54_RS05640	0.50	+1.1
1,215,038	+		LRK54_RS05640	0.50	-2.5
1,215,038	+		LRK54_RS05640	0.50	-1.8
1,215,039	-		LRK54_RS05640	0.50	-0.7
1,215,039	-		LRK54_RS05640	0.50	-0.3
1,215,039	-		LRK54_RS05640	0.50	-2.2
1,215,039	-		LRK54_RS05640	0.50	-0.7
1,215,039	-		LRK54_RS05640	0.50	-1.1
1,215,044	+		LRK54_RS05640	0.51	+1.3
1,215,044	+		LRK54_RS05640	0.51	-1.9
1,215,045	-		LRK54_RS05640	0.51	-0.3
1,215,045	-		LRK54_RS05640	0.51	-2.1
1,215,086	+		LRK54_RS05640	0.55	-1.3
1,215,086	+		LRK54_RS05640	0.55	-0.8
1,215,103	+		LRK54_RS05640	0.57	-1.1
1,215,152	+		LRK54_RS05640	0.62	-1.3
1,215,152	+		LRK54_RS05640	0.62	-2.4
1,215,152	+		LRK54_RS05640	0.62	+0.7
1,215,152	+		LRK54_RS05640	0.62	-1.9
1,215,153	-		LRK54_RS05640	0.62	-0.5
1,215,153	-		LRK54_RS05640	0.62	+0.5
1,215,153	-		LRK54_RS05640	0.62	-1.3
1,215,153	-		LRK54_RS05640	0.62	+0.2
1,215,215	+		LRK54_RS05640	0.68	-1.7
1,215,215	+		LRK54_RS05640	0.68	-1.8
1,215,215	+		LRK54_RS05640	0.68	-1.1
1,215,215	+		LRK54_RS05640	0.68	-0.0
1,215,215	+		LRK54_RS05640	0.68	-1.0
1,215,215	+		LRK54_RS05640	0.68	-1.7
1,215,216	-		LRK54_RS05640	0.69	-2.1
1,215,216	-		LRK54_RS05640	0.69	-1.1
1,215,216	-		LRK54_RS05640	0.69	+0.1
1,215,284	+		LRK54_RS05640	0.76	-1.4
1,215,284	+		LRK54_RS05640	0.76	-1.9
1,215,284	+		LRK54_RS05640	0.76	-1.5
1,215,285	-		LRK54_RS05640	0.76	-0.6
1,215,285	-		LRK54_RS05640	0.76	-1.1
1,215,285	-		LRK54_RS05640	0.76	+0.7
1,215,305	+		LRK54_RS05640	0.78	-0.9
1,215,305	+		LRK54_RS05640	0.78	-0.9
1,215,305	+		LRK54_RS05640	0.78	-0.7
1,215,305	+		LRK54_RS05640	0.78	-1.6
1,215,305	+		LRK54_RS05640	0.78	-2.1
1,215,305	+		LRK54_RS05640	0.78	-1.0
1,215,305	+		LRK54_RS05640	0.78	-2.5
1,215,305	+		LRK54_RS05640	0.78	-1.3
1,215,305	+		LRK54_RS05640	0.78	-0.5
1,215,305	+		LRK54_RS05640	0.78	-1.6
1,215,305	+		LRK54_RS05640	0.78	-1.9
1,215,305	+		LRK54_RS05640	0.78	-1.4
1,215,305	+		LRK54_RS05640	0.78	-0.9
1,215,305	+		LRK54_RS05640	0.78	-1.4
1,215,305	+		LRK54_RS05640	0.78	-1.1
1,215,305	+		LRK54_RS05640	0.78	-0.3
1,215,305	+		LRK54_RS05640	0.78	-0.9
1,215,306	-		LRK54_RS05640	0.78	-0.0
1,215,306	-		LRK54_RS05640	0.78	-2.4
1,215,306	-		LRK54_RS05640	0.78	-0.3
1,215,306	-		LRK54_RS05640	0.78	+0.9
1,215,306	-		LRK54_RS05640	0.78	-0.1
1,215,306	-		LRK54_RS05640	0.78	+0.5
1,215,306	-		LRK54_RS05640	0.78	+0.1
1,215,306	-		LRK54_RS05640	0.78	-0.5
1,215,306	-		LRK54_RS05640	0.78	+0.3
1,215,306	-		LRK54_RS05640	0.78	-1.3
1,215,425	+				+0.3
1,215,425	+				-1.9
1,215,476	+				-2.3
1,215,477	-				-0.1
1,215,505	+				+0.3
1,215,505	+				-2.3
1,215,505	+				-0.5
1,215,506	-				-0.3
1,215,506	-				-0.7
1,215,506	-				-1.3
1,215,511	+				+0.6
1,215,511	+				+0.7
1,215,511	+				+0.3
1,215,511	+				-0.7
1,215,511	+				+2.3
1,215,511	+				+1.3
1,215,511	+				-0.9
1,215,511	+				-1.5
1,215,511	+				+1.3
1,215,511	+				-1.4
1,215,512	-				-1.1
1,215,512	-				-0.0
1,215,512	-				-0.7
1,215,512	-				-1.4
1,215,512	-				-1.6
1,215,512	-				-1.0
1,215,512	-				-1.5
1,215,525	+				+0.5
1,215,525	+				-0.7
1,215,525	+				+0.3
1,215,525	+				-0.1
1,215,525	+				-2.8
1,215,525	+				+1.0
1,215,525	+				-1.1
1,215,525	+				-1.0
1,215,525	+				-1.9
1,215,526	-				+1.3
1,215,526	-				-0.1
1,215,526	-				-0.0
1,215,526	-				-0.9
1,215,533	+				-0.3
1,215,534	-				+0.1
1,215,534	-				-2.7