Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05015

Experiment: R2A with nitrite 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 50 mM
1,069,163	+		LRK54_RS05010	0.27	+1.5
1,069,163	+		LRK54_RS05010	0.27	+1.2
1,069,163	+		LRK54_RS05010	0.27	+1.2
1,069,163	+		LRK54_RS05010	0.27	+0.5
1,069,163	+		LRK54_RS05010	0.27	+0.5
1,069,163	+		LRK54_RS05010	0.27	+0.1
1,069,163	+		LRK54_RS05010	0.27	+0.4
1,069,163	+		LRK54_RS05010	0.27	+0.5
1,069,163	+		LRK54_RS05010	0.27	+0.5
1,069,163	+		LRK54_RS05010	0.27	+0.7
1,069,164	-		LRK54_RS05010	0.27	+0.1
1,069,164	-		LRK54_RS05010	0.27	-0.0
1,069,164	-		LRK54_RS05010	0.27	+1.4
1,069,164	-		LRK54_RS05010	0.27	+0.1
1,069,277	+		LRK54_RS05010	0.36	-0.1
1,069,277	+		LRK54_RS05010	0.36	+0.8
1,069,277	+		LRK54_RS05010	0.36	-0.4
1,069,277	+		LRK54_RS05010	0.36	+0.4
1,069,277	+		LRK54_RS05010	0.36	-0.5
1,069,277	+		LRK54_RS05010	0.36	+0.5
1,069,277	+		LRK54_RS05010	0.36	+0.3
1,069,277	+		LRK54_RS05010	0.36	+0.8
1,069,277	+		LRK54_RS05010	0.36	-0.4
1,069,278	-		LRK54_RS05010	0.36	+0.0
1,069,278	-		LRK54_RS05010	0.36	+0.3
1,069,278	-		LRK54_RS05010	0.36	+2.1
1,069,278	-		LRK54_RS05010	0.36	+1.7
1,069,278	-		LRK54_RS05010	0.36	+0.9
1,069,278	-		LRK54_RS05010	0.36	+0.6
1,069,278	-		LRK54_RS05010	0.36	+1.0
1,069,278	-		LRK54_RS05010	0.36	+0.4
1,069,279	+		LRK54_RS05010	0.36	-1.7
1,069,279	+		LRK54_RS05010	0.36	+0.4
1,069,279	+		LRK54_RS05010	0.36	+0.2
1,069,279	+		LRK54_RS05010	0.36	-0.4
1,069,279	+		LRK54_RS05010	0.36	-0.3
1,069,279	+		LRK54_RS05010	0.36	+0.1
1,069,279	+		LRK54_RS05010	0.36	-0.7
1,069,279	+		LRK54_RS05010	0.36	-0.1
1,069,279	+		LRK54_RS05010	0.36	-0.2
1,069,279	+		LRK54_RS05010	0.36	+1.1
1,069,279	+		LRK54_RS05010	0.36	+0.6
1,069,279	+		LRK54_RS05010	0.36	+0.2
1,069,279	+		LRK54_RS05010	0.36	+1.1
1,069,279	+		LRK54_RS05010	0.36	+0.3
1,069,279	+		LRK54_RS05010	0.36	+0.8
1,069,280	-		LRK54_RS05010	0.36	+0.9
1,069,280	-		LRK54_RS05010	0.36	+0.6
1,069,280	-		LRK54_RS05010	0.36	-0.2
1,069,280	-		LRK54_RS05010	0.36	+0.4
1,069,280	-		LRK54_RS05010	0.36	+0.7
1,069,280	-		LRK54_RS05010	0.36	-1.3
1,069,280	-		LRK54_RS05010	0.36	-0.9
1,069,280	-		LRK54_RS05010	0.36	+0.4
1,069,280	-		LRK54_RS05010	0.36	+0.6
1,069,280	-		LRK54_RS05010	0.36	-0.2
1,069,280	-		LRK54_RS05010	0.36	+0.1
1,069,280	-		LRK54_RS05010	0.36	+0.4
1,069,280	-		LRK54_RS05010	0.36	+0.9
1,069,280	-		LRK54_RS05010	0.36	-0.2
1,069,322	+		LRK54_RS05010	0.39	+0.3
1,069,322	+		LRK54_RS05010	0.39	-0.9
1,069,322	+		LRK54_RS05010	0.39	+1.0
1,069,322	+		LRK54_RS05010	0.39	+0.3
1,069,322	+		LRK54_RS05010	0.39	+0.6
1,069,323	-		LRK54_RS05010	0.40	+1.4
1,069,472	+		LRK54_RS05010	0.51	-0.1
1,069,472	+		LRK54_RS05010	0.51	+1.5
1,069,472	+		LRK54_RS05010	0.51	+0.1
1,069,472	+		LRK54_RS05010	0.51	+0.7
1,069,472	+		LRK54_RS05010	0.51	+0.5
1,069,473	-		LRK54_RS05010	0.51	-0.5
1,069,473	-		LRK54_RS05010	0.51	-0.5
1,069,473	-		LRK54_RS05010	0.51	-0.3
1,069,473	-		LRK54_RS05010	0.51	-0.2
1,069,499	+		LRK54_RS05010	0.53	-1.5
1,069,499	+		LRK54_RS05010	0.53	+0.2
1,069,499	+		LRK54_RS05010	0.53	+1.2
1,069,499	+		LRK54_RS05010	0.53	+0.1
1,069,499	+		LRK54_RS05010	0.53	+0.5
1,069,499	+		LRK54_RS05010	0.53	+0.7
1,069,499	+		LRK54_RS05010	0.53	+0.6
1,069,499	+		LRK54_RS05010	0.53	+0.3
1,069,499	+		LRK54_RS05010	0.53	-0.2
1,069,499	+		LRK54_RS05010	0.53	+0.9
1,069,499	+		LRK54_RS05010	0.53	-0.1
1,069,500	-		LRK54_RS05010	0.54	-0.4
1,069,500	-		LRK54_RS05010	0.54	+0.8
1,069,500	-		LRK54_RS05010	0.54	+0.6
1,069,500	-		LRK54_RS05010	0.54	+0.3
1,069,500	-		LRK54_RS05010	0.54	+0.8
1,069,500	-		LRK54_RS05010	0.54	+2.1
1,069,500	-		LRK54_RS05010	0.54	+0.5
1,069,500	-		LRK54_RS05010	0.54	+0.6
1,069,500	-		LRK54_RS05010	0.54	-0.2
1,069,500	-		LRK54_RS05010	0.54	+0.3
1,069,500	-		LRK54_RS05010	0.54	+0.1
1,069,500	-		LRK54_RS05010	0.54	-0.1
1,069,500	-		LRK54_RS05010	0.54	-0.7
1,069,500	-		LRK54_RS05010	0.54	+0.1
1,069,624	+		LRK54_RS05010	0.63	+1.1
1,069,624	+		LRK54_RS05010	0.63	+0.9
1,069,625	-		LRK54_RS05010	0.63	-0.5
1,069,661	+		LRK54_RS05010	0.66	+0.2
1,069,662	-		LRK54_RS05010	0.66	+1.2
1,069,662	-		LRK54_RS05010	0.66	+0.5
1,069,662	-		LRK54_RS05010	0.66	+0.3
1,069,781	+		LRK54_RS05010	0.76	+0.1
1,069,782	-		LRK54_RS05010	0.76	+0.1
1,069,782	-		LRK54_RS05010	0.76	-0.1
1,069,782	-		LRK54_RS05010	0.76	+0.5
1,069,782	-		LRK54_RS05010	0.76	+0.3
1,069,782	-		LRK54_RS05010	0.76	+1.4
1,069,782	-		LRK54_RS05010	0.76	-0.2
1,069,782	-		LRK54_RS05010	0.76	+0.7
1,069,820	+		LRK54_RS05010	0.79	-0.5
1,069,821	-		LRK54_RS05010	0.79	+0.1
1,069,821	-		LRK54_RS05010	0.79	-0.6
1,069,928	+		LRK54_RS05010	0.87	+1.0
1,069,928	+		LRK54_RS05010	0.87	+0.6
1,069,928	+		LRK54_RS05010	0.87	+0.9
1,069,928	+		LRK54_RS05010	0.87	-0.2
1,069,928	+		LRK54_RS05010	0.87	+0.2
1,069,928	+		LRK54_RS05010	0.87	-1.1
1,069,928	+		LRK54_RS05010	0.87	+0.8
1,069,928	+		LRK54_RS05010	0.87	+1.7
1,069,928	+		LRK54_RS05010	0.87	+0.7
1,069,928	+		LRK54_RS05010	0.87	+1.0
1,069,928	+		LRK54_RS05010	0.87	+1.3
1,069,928	+		LRK54_RS05010	0.87	-0.3
1,069,928	+		LRK54_RS05010	0.87	+0.3
1,069,928	+		LRK54_RS05010	0.87	+0.5
1,069,929	-		LRK54_RS05010	0.87	-0.4
1,069,929	-		LRK54_RS05010	0.87	+0.6
1,069,929	-		LRK54_RS05010	0.87	+0.3
1,069,929	-		LRK54_RS05010	0.87	+0.3
1,069,929	-		LRK54_RS05010	0.87	-0.3
1,069,929	-		LRK54_RS05010	0.87	+1.4
1,069,929	-		LRK54_RS05010	0.87	+0.3
1,069,929	-		LRK54_RS05010	0.87	+1.1
1,069,929	-		LRK54_RS05010	0.87	+0.4
1,069,929	-		LRK54_RS05010	0.87	+1.5
1,069,929	-		LRK54_RS05010	0.87	+0.3
1,069,976	+				+0.5
1,069,976	+				+0.8
1,069,976	+				+0.0
1,069,976	+				+0.7
1,069,976	+				+1.4
1,069,977	-				+0.6
1,069,977	-				+0.4
1,069,977	-				+0.7
1,069,977	-				+0.4
1,069,977	-				+1.2
1,070,087	+				-0.8
1,070,087	+				+1.2
1,070,087	+				-0.2
1,070,088	-				+0.1
1,070,088	-				-1.1
1,070,088	-				+0.4
1,070,232	+				-0.2
1,070,232	+				+0.5
1,070,232	+				-0.2
1,070,232	+				-0.4
1,070,232	+				+0.1
1,070,233	-				+0.4
1,070,233	-				-0.8
1,070,233	-				-0.3
1,070,233	-				-0.4
1,070,233	-				+1.8
1,070,244	+				+1.9
1,070,244	+				-0.6
1,070,244	+				+0.8
1,070,244	+				-0.2
1,070,244	+				-1.0
1,070,244	+				-0.3
1,070,244	+				-1.0
1,070,244	+				-0.3
1,070,245	-				+0.9
1,070,245	-				+0.4
1,070,245	-				+0.1
1,070,245	-				-1.4
1,070,245	-				+0.6
1,070,245	-				-0.3
1,070,245	-				-0.7
1,070,245	-				-0.4
1,070,259	+				+0.3
1,070,259	+				-0.4
1,070,259	+				+0.8
1,070,259	+				-0.2
1,070,259	+				+0.0
1,070,259	+				-0.2
1,070,259	+				-0.4
1,070,259	+				+0.4
1,070,260	-				+0.1
1,070,260	-				+1.0
1,070,260	-				-0.2
1,070,260	-				-0.9
1,070,307	+				-0.6
1,070,307	+				+0.5
1,070,307	+				-1.0
1,070,307	+				-2.1
1,070,307	+				-0.8
1,070,307	+				+1.8
1,070,307	+				-0.5
1,070,307	+				+1.1
1,070,307	+				-0.2
1,070,307	+				+0.1
1,070,307	+				-1.5
1,070,307	+				+0.2
1,070,307	+				-0.6
1,070,307	+				-1.3
1,070,307	+				-0.8
1,070,307	+				-0.4
1,070,307	+				-0.6
1,070,307	+				-0.2
1,070,307	+				+0.2
1,070,307	+				+0.5
1,070,307	+				-0.7
1,070,307	+				+1.1
1,070,307	+				-0.4
1,070,307	+				+0.6
1,070,307	+				-0.4
1,070,307	+				-0.6
1,070,307	+				+0.5
1,070,307	+				-0.5
1,070,308	-				-0.3
1,070,308	-				+0.7
1,070,308	-				+0.3
1,070,308	-				-0.2
1,070,308	-				+0.2
1,070,308	-				+0.4
1,070,308	-				-0.3
1,070,308	-				+1.4
1,070,308	-				-1.5
1,070,308	-				-0.8
1,070,308	-				-1.4
1,070,308	-				-0.5
1,070,308	-				-1.3
1,070,308	-				-0.0
1,070,308	-				-1.9
1,070,308	-				+0.7
1,070,308	-				-1.2
1,070,308	-				+0.5
1,070,308	-				-0.2
1,070,308	-				+1.0
1,070,308	-				-0.7
1,070,308	-				+0.9
1,070,328	+				-0.4
1,070,328	+				+1.5
1,070,328	+				-1.1
1,070,328	+				-0.7
1,070,329	-				-0.5
1,070,329	-				+1.4
1,070,329	-				-0.3
1,070,329	-				+0.1
1,070,329	-				+0.4
1,070,329	-				-0.2
1,070,329	-				+1.4
1,070,329	-				-1.3
1,070,329	-				-2.1
1,070,329	-				+0.5
1,070,329	-				-0.4
1,070,329	-				+0.1
1,070,329	-				-1.1
1,070,385	+		LRK54_RS05015	0.12	-0.8
1,070,385	+		LRK54_RS05015	0.12	-1.7
1,070,386	-		LRK54_RS05015	0.12	+0.8
1,070,386	-		LRK54_RS05015	0.12	-0.9
1,070,386	-		LRK54_RS05015	0.12	-0.1
1,070,386	-		LRK54_RS05015	0.12	-0.3
1,070,386	-		LRK54_RS05015	0.12	-0.6
1,070,445	+		LRK54_RS05015	0.15	+1.1
1,070,445	+		LRK54_RS05015	0.15	-0.4
1,070,446	-		LRK54_RS05015	0.15	+1.1
1,070,446	-		LRK54_RS05015	0.15	-0.0
1,070,446	-		LRK54_RS05015	0.15	-0.5
1,070,491	-		LRK54_RS05015	0.17	+0.2
1,070,491	-		LRK54_RS05015	0.17	+0.3
1,070,491	-		LRK54_RS05015	0.17	-0.4
1,070,491	-		LRK54_RS05015	0.17	+0.3
1,070,491	-		LRK54_RS05015	0.17	+0.4
1,070,763	+		LRK54_RS05015	0.29	-0.5
1,070,772	+		LRK54_RS05015	0.30	-0.7
1,070,772	+		LRK54_RS05015	0.30	+0.4
1,070,925	+		LRK54_RS05015	0.36	+0.1
1,070,925	+		LRK54_RS05015	0.36	+0.3
1,070,925	+		LRK54_RS05015	0.36	-0.8
1,070,925	+		LRK54_RS05015	0.36	-0.0
1,070,925	+		LRK54_RS05015	0.36	+1.6
1,070,925	+		LRK54_RS05015	0.36	+0.1
1,070,925	+		LRK54_RS05015	0.36	-0.7
1,070,925	+		LRK54_RS05015	0.36	-0.0
1,070,926	-		LRK54_RS05015	0.36	+1.6
1,070,926	-		LRK54_RS05015	0.36	-0.1
1,070,926	-		LRK54_RS05015	0.36	-1.2
1,070,926	-		LRK54_RS05015	0.36	-0.7
1,070,926	-		LRK54_RS05015	0.36	-0.2
1,070,926	-		LRK54_RS05015	0.36	+0.8
1,070,926	-		LRK54_RS05015	0.36	+1.2
1,070,973	+		LRK54_RS05015	0.38	-1.4
1,070,973	+		LRK54_RS05015	0.38	+0.3
1,070,973	+		LRK54_RS05015	0.38	+0.1
1,070,973	+		LRK54_RS05015	0.38	-0.0
1,070,973	+		LRK54_RS05015	0.38	-2.7
1,070,973	+		LRK54_RS05015	0.38	-0.5
1,070,973	+		LRK54_RS05015	0.38	+0.8
1,070,973	+		LRK54_RS05015	0.38	-0.2
1,070,973	+		LRK54_RS05015	0.38	-0.1
1,070,973	+		LRK54_RS05015	0.38	+0.8
1,070,973	+		LRK54_RS05015	0.38	-0.7
1,070,973	+		LRK54_RS05015	0.38	-0.8
1,070,973	+		LRK54_RS05015	0.38	+0.1
1,070,973	+		LRK54_RS05015	0.38	-0.6
1,070,973	+		LRK54_RS05015	0.38	+0.6
1,070,973	+		LRK54_RS05015	0.38	-1.9
1,070,973	+		LRK54_RS05015	0.38	+2.4
1,070,973	+		LRK54_RS05015	0.38	-0.9
1,070,973	+		LRK54_RS05015	0.38	-1.0
1,070,973	+		LRK54_RS05015	0.38	-0.2
1,070,973	+		LRK54_RS05015	0.38	-0.3
1,070,973	+		LRK54_RS05015	0.38	+0.8
1,070,973	+		LRK54_RS05015	0.38	+2.1
1,070,974	-		LRK54_RS05015	0.38	+1.3
1,070,974	-		LRK54_RS05015	0.38	-0.9
1,070,974	-		LRK54_RS05015	0.38	-2.2
1,070,974	-		LRK54_RS05015	0.38	-0.3
1,070,974	-		LRK54_RS05015	0.38	-0.7
1,070,974	-		LRK54_RS05015	0.38	-0.9
1,070,974	-		LRK54_RS05015	0.38	+0.2
1,070,974	-		LRK54_RS05015	0.38	-0.5
1,070,974	-		LRK54_RS05015	0.38	-0.5
1,070,974	-		LRK54_RS05015	0.38	-0.6
1,070,974	-		LRK54_RS05015	0.38	-0.7
1,070,974	-		LRK54_RS05015	0.38	-1.3
1,070,974	-		LRK54_RS05015	0.38	-2.0
1,070,974	-		LRK54_RS05015	0.38	-0.3
1,070,974	-		LRK54_RS05015	0.38	-0.2
1,070,974	-		LRK54_RS05015	0.38	-0.2
1,070,974	-		LRK54_RS05015	0.38	-0.3
1,070,974	-		LRK54_RS05015	0.38	-1.0
1,070,974	-		LRK54_RS05015	0.38	+0.6
1,070,988	+		LRK54_RS05015	0.39	-0.9
1,070,988	+		LRK54_RS05015	0.39	+0.6
1,070,988	+		LRK54_RS05015	0.39	-0.6
1,070,988	+		LRK54_RS05015	0.39	+0.1
1,070,988	+		LRK54_RS05015	0.39	-0.4
1,070,988	+		LRK54_RS05015	0.39	-0.2
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