Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS05010

Experiment: R2A with nitrite 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 50 mM
1,067,856	+		LRK54_RS05005	0.66	-0.9
1,067,856	+		LRK54_RS05005	0.66	-0.3
1,067,857	-		LRK54_RS05005	0.66	-0.7
1,067,857	-		LRK54_RS05005	0.66	+0.0
1,067,857	-		LRK54_RS05005	0.66	+0.4
1,067,857	-		LRK54_RS05005	0.66	-0.3
1,067,857	-		LRK54_RS05005	0.66	+0.6
1,067,889	+		LRK54_RS05005	0.67	+0.6
1,067,889	+		LRK54_RS05005	0.67	+1.2
1,067,889	+		LRK54_RS05005	0.67	-0.9
1,067,889	+		LRK54_RS05005	0.67	-0.4
1,067,889	+		LRK54_RS05005	0.67	-1.4
1,067,890	-		LRK54_RS05005	0.67	+1.3
1,067,890	-		LRK54_RS05005	0.67	-1.3
1,067,943	+		LRK54_RS05005	0.69	+0.7
1,067,943	+		LRK54_RS05005	0.69	-0.9
1,067,943	+		LRK54_RS05005	0.69	+0.2
1,067,943	+		LRK54_RS05005	0.69	+0.3
1,067,943	+		LRK54_RS05005	0.69	-1.3
1,067,943	+		LRK54_RS05005	0.69	+2.0
1,067,944	-		LRK54_RS05005	0.69	+0.2
1,067,944	-		LRK54_RS05005	0.69	+1.2
1,067,944	-		LRK54_RS05005	0.69	-0.4
1,067,944	-		LRK54_RS05005	0.69	+0.8
1,067,970	+		LRK54_RS05005	0.70	+0.1
1,067,970	+		LRK54_RS05005	0.70	-0.9
1,067,970	+		LRK54_RS05005	0.70	-0.7
1,067,970	+		LRK54_RS05005	0.70	-1.9
1,067,970	+		LRK54_RS05005	0.70	+0.7
1,067,971	-		LRK54_RS05005	0.70	+0.8
1,067,971	-		LRK54_RS05005	0.70	-0.8
1,067,971	-		LRK54_RS05005	0.70	-0.2
1,067,971	-		LRK54_RS05005	0.70	+0.2
1,067,971	-		LRK54_RS05005	0.70	+1.5
1,068,087	+		LRK54_RS05005	0.75	-0.0
1,068,087	+		LRK54_RS05005	0.75	+1.4
1,068,087	+		LRK54_RS05005	0.75	-0.2
1,068,087	+		LRK54_RS05005	0.75	-0.3
1,068,087	+		LRK54_RS05005	0.75	+0.8
1,068,088	-		LRK54_RS05005	0.75	+0.6
1,068,088	-		LRK54_RS05005	0.75	+1.4
1,068,088	-		LRK54_RS05005	0.75	+1.4
1,068,088	-		LRK54_RS05005	0.75	+0.1
1,068,088	-		LRK54_RS05005	0.75	+0.1
1,068,088	-		LRK54_RS05005	0.75	-0.5
1,068,105	+		LRK54_RS05005	0.76	-0.9
1,068,105	+		LRK54_RS05005	0.76	-1.5
1,068,105	+		LRK54_RS05005	0.76	+1.5
1,068,105	+		LRK54_RS05005	0.76	-0.1
1,068,105	+		LRK54_RS05005	0.76	-0.0
1,068,106	-		LRK54_RS05005	0.76	+0.4
1,068,106	-		LRK54_RS05005	0.76	+0.3
1,068,106	-		LRK54_RS05005	0.76	+0.5
1,068,123	+		LRK54_RS05005	0.76	-0.0
1,068,123	+		LRK54_RS05005	0.76	-0.9
1,068,123	+		LRK54_RS05005	0.76	+1.1
1,068,123	+		LRK54_RS05005	0.76	-0.2
1,068,123	+		LRK54_RS05005	0.76	+0.4
1,068,123	+		LRK54_RS05005	0.76	-0.3
1,068,124	-		LRK54_RS05005	0.76	-0.1
1,068,124	-		LRK54_RS05005	0.76	+0.5
1,068,124	-		LRK54_RS05005	0.76	-0.3
1,068,124	-		LRK54_RS05005	0.76	+2.4
1,068,124	-		LRK54_RS05005	0.76	-2.0
1,068,124	-		LRK54_RS05005	0.76	+1.8
1,068,150	+		LRK54_RS05005	0.77	-1.6
1,068,150	+		LRK54_RS05005	0.77	-0.6
1,068,150	+		LRK54_RS05005	0.77	-0.4
1,068,150	+		LRK54_RS05005	0.77	+0.1
1,068,151	-		LRK54_RS05005	0.77	+0.1
1,068,151	-		LRK54_RS05005	0.77	-0.2
1,068,151	-		LRK54_RS05005	0.77	+0.7
1,068,151	-		LRK54_RS05005	0.77	+0.2
1,068,176	-		LRK54_RS05005	0.78	+1.0
1,068,198	+		LRK54_RS05005	0.79	-0.6
1,068,198	+		LRK54_RS05005	0.79	-0.2
1,068,199	-		LRK54_RS05005	0.79	+2.0
1,068,199	-		LRK54_RS05005	0.79	-0.6
1,068,279	+		LRK54_RS05005	0.83	-1.2
1,068,279	+		LRK54_RS05005	0.83	-0.7
1,068,279	+		LRK54_RS05005	0.83	+1.2
1,068,279	+		LRK54_RS05005	0.83	+0.1
1,068,279	+		LRK54_RS05005	0.83	+1.1
1,068,279	+		LRK54_RS05005	0.83	-0.3
1,068,279	+		LRK54_RS05005	0.83	-1.5
1,068,279	+		LRK54_RS05005	0.83	+1.6
1,068,279	+		LRK54_RS05005	0.83	-0.4
1,068,280	-		LRK54_RS05005	0.83	+1.1
1,068,280	-		LRK54_RS05005	0.83	+1.4
1,068,280	-		LRK54_RS05005	0.83	+0.8
1,068,280	-		LRK54_RS05005	0.83	-0.3
1,068,280	-		LRK54_RS05005	0.83	-0.6
1,068,294	+		LRK54_RS05005	0.83	-0.8
1,068,294	+		LRK54_RS05005	0.83	+1.8
1,068,294	+		LRK54_RS05005	0.83	-0.2
1,068,294	+		LRK54_RS05005	0.83	-0.6
1,068,295	-		LRK54_RS05005	0.83	-0.1
1,068,295	-		LRK54_RS05005	0.83	+0.8
1,068,321	+		LRK54_RS05005	0.84	-0.2
1,068,321	+		LRK54_RS05005	0.84	+1.5
1,068,322	-		LRK54_RS05005	0.84	-0.2
1,068,322	-		LRK54_RS05005	0.84	+0.1
1,068,322	-		LRK54_RS05005	0.84	+0.2
1,068,322	-		LRK54_RS05005	0.84	+0.5
1,068,322	-		LRK54_RS05005	0.84	+1.1
1,068,399	+		LRK54_RS05005	0.87	+1.2
1,068,399	+		LRK54_RS05005	0.87	+0.9
1,068,399	+		LRK54_RS05005	0.87	+0.6
1,068,399	+		LRK54_RS05005	0.87	-0.0
1,068,399	+		LRK54_RS05005	0.87	+2.4
1,068,399	+		LRK54_RS05005	0.87	+1.0
1,068,399	+		LRK54_RS05005	0.87	-1.2
1,068,400	-		LRK54_RS05005	0.87	+0.7
1,068,400	-		LRK54_RS05005	0.87	+1.0
1,068,400	-		LRK54_RS05005	0.87	+1.8
1,068,400	-		LRK54_RS05005	0.87	+1.0
1,068,400	-		LRK54_RS05005	0.87	+0.1
1,068,400	-		LRK54_RS05005	0.87	+0.4
1,068,417	+		LRK54_RS05005	0.88	+2.4
1,068,462	+		LRK54_RS05005	0.90	+0.3
1,068,462	+		LRK54_RS05005	0.90	+0.3
1,068,462	+		LRK54_RS05005	0.90	+0.8
1,068,463	-		LRK54_RS05005	0.90	+0.6
1,068,463	-		LRK54_RS05005	0.90	+0.6
1,068,463	-		LRK54_RS05005	0.90	+0.5
1,068,463	-		LRK54_RS05005	0.90	+0.5
1,068,463	-		LRK54_RS05005	0.90	-0.4
1,068,463	-		LRK54_RS05005	0.90	-0.7
1,068,519	+				-2.0
1,068,519	+				+1.4
1,068,519	+				-0.9
1,068,519	+				-0.0
1,068,519	+				+0.1
1,068,520	-				-0.7
1,068,520	-				-0.8
1,068,520	-				+0.1
1,068,520	-				-1.2
1,068,711	+				+0.4
1,068,711	+				+0.0
1,068,711	+				-1.3
1,068,711	+				-0.2
1,068,711	+				-0.1
1,068,711	+				-0.0
1,068,711	+				+2.4
1,068,711	+				-0.8
1,068,711	+				+0.2
1,068,711	+				-0.5
1,068,711	+				-1.6
1,068,711	+				-0.1
1,068,711	+				-0.5
1,068,711	+				+0.7
1,068,711	+				-0.5
1,068,711	+				+0.2
1,068,712	-				+0.2
1,068,712	-				+0.4
1,068,712	-				+0.1
1,068,712	-				+0.5
1,068,712	-				-0.4
1,068,712	-				-0.8
1,068,712	-				-0.7
1,068,712	-				-0.8
1,068,712	-				+0.3
1,068,712	-				+1.8
1,068,712	-				+0.1
1,068,712	-				-2.0
1,068,712	-				+0.9
1,068,712	-				+0.5
1,068,860	+				+0.1
1,068,860	+				-0.4
1,068,860	+				+0.1
1,068,860	+				+0.2
1,068,860	+				-0.0
1,068,860	+				-0.2
1,068,860	+				+0.1
1,068,860	+				+1.4
1,068,860	+				+0.1
1,068,860	+				+1.6
1,068,860	+				+1.1
1,068,861	-				+1.2
1,068,861	-				+1.6
1,068,861	-				+0.7
1,068,861	-				+0.5
1,068,861	-				-0.4
1,068,861	-				+0.5
1,068,861	-				+1.0
1,068,861	-				+0.9
1,068,861	-				+1.4
1,068,861	-				+0.2
1,068,962	+		LRK54_RS05010	0.11	+1.1
1,068,962	+		LRK54_RS05010	0.11	+0.5
1,068,962	+		LRK54_RS05010	0.11	-0.4
1,068,962	+		LRK54_RS05010	0.11	+0.6
1,068,962	+		LRK54_RS05010	0.11	-0.1
1,068,962	+		LRK54_RS05010	0.11	-1.1
1,068,962	+		LRK54_RS05010	0.11	+0.7
1,068,962	+		LRK54_RS05010	0.11	+0.6
1,068,962	+		LRK54_RS05010	0.11	+0.4
1,068,962	+		LRK54_RS05010	0.11	+0.7
1,068,962	+		LRK54_RS05010	0.11	+0.7
1,068,963	-		LRK54_RS05010	0.11	+0.6
1,068,963	-		LRK54_RS05010	0.11	+0.4
1,068,963	-		LRK54_RS05010	0.11	+0.3
1,068,963	-		LRK54_RS05010	0.11	+0.5
1,068,963	-		LRK54_RS05010	0.11	+0.9
1,069,088	+		LRK54_RS05010	0.21	-0.1
1,069,089	-		LRK54_RS05010	0.21	-0.2
1,069,163	+		LRK54_RS05010	0.27	+1.5
1,069,163	+		LRK54_RS05010	0.27	+1.2
1,069,163	+		LRK54_RS05010	0.27	+1.2
1,069,163	+		LRK54_RS05010	0.27	+0.5
1,069,163	+		LRK54_RS05010	0.27	+0.5
1,069,163	+		LRK54_RS05010	0.27	+0.1
1,069,163	+		LRK54_RS05010	0.27	+0.4
1,069,163	+		LRK54_RS05010	0.27	+0.5
1,069,163	+		LRK54_RS05010	0.27	+0.5
1,069,163	+		LRK54_RS05010	0.27	+0.7
1,069,164	-		LRK54_RS05010	0.27	+0.1
1,069,164	-		LRK54_RS05010	0.27	-0.0
1,069,164	-		LRK54_RS05010	0.27	+1.4
1,069,164	-		LRK54_RS05010	0.27	+0.1
1,069,277	+		LRK54_RS05010	0.36	-0.1
1,069,277	+		LRK54_RS05010	0.36	+0.8
1,069,277	+		LRK54_RS05010	0.36	-0.4
1,069,277	+		LRK54_RS05010	0.36	+0.4
1,069,277	+		LRK54_RS05010	0.36	-0.5
1,069,277	+		LRK54_RS05010	0.36	+0.5
1,069,277	+		LRK54_RS05010	0.36	+0.3
1,069,277	+		LRK54_RS05010	0.36	+0.8
1,069,277	+		LRK54_RS05010	0.36	-0.4
1,069,278	-		LRK54_RS05010	0.36	+0.0
1,069,278	-		LRK54_RS05010	0.36	+0.3
1,069,278	-		LRK54_RS05010	0.36	+2.1
1,069,278	-		LRK54_RS05010	0.36	+1.7
1,069,278	-		LRK54_RS05010	0.36	+0.9
1,069,278	-		LRK54_RS05010	0.36	+0.6
1,069,278	-		LRK54_RS05010	0.36	+1.0
1,069,278	-		LRK54_RS05010	0.36	+0.4
1,069,279	+		LRK54_RS05010	0.36	-1.7
1,069,279	+		LRK54_RS05010	0.36	+0.4
1,069,279	+		LRK54_RS05010	0.36	+0.2
1,069,279	+		LRK54_RS05010	0.36	-0.4
1,069,279	+		LRK54_RS05010	0.36	-0.3
1,069,279	+		LRK54_RS05010	0.36	+0.1
1,069,279	+		LRK54_RS05010	0.36	-0.7
1,069,279	+		LRK54_RS05010	0.36	-0.1
1,069,279	+		LRK54_RS05010	0.36	-0.2
1,069,279	+		LRK54_RS05010	0.36	+1.1
1,069,279	+		LRK54_RS05010	0.36	+0.6
1,069,279	+		LRK54_RS05010	0.36	+0.2
1,069,279	+		LRK54_RS05010	0.36	+1.1
1,069,279	+		LRK54_RS05010	0.36	+0.3
1,069,279	+		LRK54_RS05010	0.36	+0.8
1,069,280	-		LRK54_RS05010	0.36	+0.9
1,069,280	-		LRK54_RS05010	0.36	+0.6
1,069,280	-		LRK54_RS05010	0.36	-0.2
1,069,280	-		LRK54_RS05010	0.36	+0.4
1,069,280	-		LRK54_RS05010	0.36	+0.7
1,069,280	-		LRK54_RS05010	0.36	-1.3
1,069,280	-		LRK54_RS05010	0.36	-0.9
1,069,280	-		LRK54_RS05010	0.36	+0.4
1,069,280	-		LRK54_RS05010	0.36	+0.6
1,069,280	-		LRK54_RS05010	0.36	-0.2
1,069,280	-		LRK54_RS05010	0.36	+0.1
1,069,280	-		LRK54_RS05010	0.36	+0.4
1,069,280	-		LRK54_RS05010	0.36	+0.9
1,069,280	-		LRK54_RS05010	0.36	-0.2
1,069,322	+		LRK54_RS05010	0.39	+0.3
1,069,322	+		LRK54_RS05010	0.39	-0.9
1,069,322	+		LRK54_RS05010	0.39	+1.0
1,069,322	+		LRK54_RS05010	0.39	+0.3
1,069,322	+		LRK54_RS05010	0.39	+0.6
1,069,323	-		LRK54_RS05010	0.40	+1.4
1,069,472	+		LRK54_RS05010	0.51	-0.1
1,069,472	+		LRK54_RS05010	0.51	+1.5
1,069,472	+		LRK54_RS05010	0.51	+0.1
1,069,472	+		LRK54_RS05010	0.51	+0.7
1,069,472	+		LRK54_RS05010	0.51	+0.5
1,069,473	-		LRK54_RS05010	0.51	-0.5
1,069,473	-		LRK54_RS05010	0.51	-0.5
1,069,473	-		LRK54_RS05010	0.51	-0.3
1,069,473	-		LRK54_RS05010	0.51	-0.2
1,069,499	+		LRK54_RS05010	0.53	-1.5
1,069,499	+		LRK54_RS05010	0.53	+0.2
1,069,499	+		LRK54_RS05010	0.53	+1.2
1,069,499	+		LRK54_RS05010	0.53	+0.1
1,069,499	+		LRK54_RS05010	0.53	+0.5
1,069,499	+		LRK54_RS05010	0.53	+0.7
1,069,499	+		LRK54_RS05010	0.53	+0.6
1,069,499	+		LRK54_RS05010	0.53	+0.3
1,069,499	+		LRK54_RS05010	0.53	-0.2
1,069,499	+		LRK54_RS05010	0.53	+0.9
1,069,499	+		LRK54_RS05010	0.53	-0.1
1,069,500	-		LRK54_RS05010	0.54	-0.4
1,069,500	-		LRK54_RS05010	0.54	+0.8
1,069,500	-		LRK54_RS05010	0.54	+0.6
1,069,500	-		LRK54_RS05010	0.54	+0.3
1,069,500	-		LRK54_RS05010	0.54	+0.8
1,069,500	-		LRK54_RS05010	0.54	+2.1
1,069,500	-		LRK54_RS05010	0.54	+0.5
1,069,500	-		LRK54_RS05010	0.54	+0.6
1,069,500	-		LRK54_RS05010	0.54	-0.2
1,069,500	-		LRK54_RS05010	0.54	+0.3
1,069,500	-		LRK54_RS05010	0.54	+0.1
1,069,500	-		LRK54_RS05010	0.54	-0.1
1,069,500	-		LRK54_RS05010	0.54	-0.7
1,069,500	-		LRK54_RS05010	0.54	+0.1
1,069,624	+		LRK54_RS05010	0.63	+1.1
1,069,624	+		LRK54_RS05010	0.63	+0.9
1,069,625	-		LRK54_RS05010	0.63	-0.5
1,069,661	+		LRK54_RS05010	0.66	+0.2
1,069,662	-		LRK54_RS05010	0.66	+1.2
1,069,662	-		LRK54_RS05010	0.66	+0.5
1,069,662	-		LRK54_RS05010	0.66	+0.3
1,069,781	+		LRK54_RS05010	0.76	+0.1
1,069,782	-		LRK54_RS05010	0.76	+0.1
1,069,782	-		LRK54_RS05010	0.76	-0.1
1,069,782	-		LRK54_RS05010	0.76	+0.5
1,069,782	-		LRK54_RS05010	0.76	+0.3
1,069,782	-		LRK54_RS05010	0.76	+1.4
1,069,782	-		LRK54_RS05010	0.76	-0.2
1,069,782	-		LRK54_RS05010	0.76	+0.7
1,069,820	+		LRK54_RS05010	0.79	-0.5
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