Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04945

Experiment: R2A with nitrite 50 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with nitrite 50 mM
1,046,055	+		LRK54_RS04935	0.54	-0.0
1,046,056	-		LRK54_RS04935	0.54	+0.0
1,046,061	+		LRK54_RS04935	0.55	+0.1
1,046,061	+		LRK54_RS04935	0.55	-1.1
1,046,061	+		LRK54_RS04935	0.55	+0.1
1,046,061	+		LRK54_RS04935	0.55	-0.2
1,046,061	+		LRK54_RS04935	0.55	-1.5
1,046,061	+		LRK54_RS04935	0.55	-1.1
1,046,061	+		LRK54_RS04935	0.55	+0.8
1,046,061	+		LRK54_RS04935	0.55	-2.8
1,046,061	+		LRK54_RS04935	0.55	-0.2
1,046,061	+		LRK54_RS04935	0.55	-0.3
1,046,061	+		LRK54_RS04935	0.55	+2.4
1,046,061	+		LRK54_RS04935	0.55	+0.2
1,046,061	+		LRK54_RS04935	0.55	-0.3
1,046,061	+		LRK54_RS04935	0.55	-0.1
1,046,062	-		LRK54_RS04935	0.55	+2.4
1,046,062	-		LRK54_RS04935	0.55	-0.5
1,046,062	-		LRK54_RS04935	0.55	-1.3
1,046,062	-		LRK54_RS04935	0.55	-0.3
1,046,062	-		LRK54_RS04935	0.55	-0.2
1,046,062	-		LRK54_RS04935	0.55	+0.3
1,046,062	-		LRK54_RS04935	0.55	-0.3
1,046,062	-		LRK54_RS04935	0.55	+0.1
1,046,062	-		LRK54_RS04935	0.55	-0.0
1,046,178	+		LRK54_RS04935	0.73	-1.2
1,046,178	+		LRK54_RS04935	0.73	+0.1
1,046,178	+		LRK54_RS04935	0.73	+1.0
1,046,178	+		LRK54_RS04935	0.73	-0.3
1,046,178	+		LRK54_RS04935	0.73	-1.0
1,046,178	+		LRK54_RS04935	0.73	+0.2
1,046,178	+		LRK54_RS04935	0.73	+0.5
1,046,178	+		LRK54_RS04935	0.73	+0.1
1,046,178	+		LRK54_RS04935	0.73	+1.3
1,046,178	+		LRK54_RS04935	0.73	+0.4
1,046,178	+		LRK54_RS04935	0.73	-0.0
1,046,178	+		LRK54_RS04935	0.73	+0.4
1,046,178	+		LRK54_RS04935	0.73	-1.1
1,046,179	-		LRK54_RS04935	0.73	-2.7
1,046,179	-		LRK54_RS04935	0.73	+0.4
1,046,179	-		LRK54_RS04935	0.73	+0.3
1,046,179	-		LRK54_RS04935	0.73	+0.2
1,046,179	-		LRK54_RS04935	0.73	+0.6
1,046,179	-		LRK54_RS04935	0.73	-1.5
1,046,179	-		LRK54_RS04935	0.73	-1.1
1,046,179	-		LRK54_RS04935	0.73	-0.9
1,046,179	-		LRK54_RS04935	0.73	+0.4
1,046,179	-		LRK54_RS04935	0.73	-0.7
1,046,179	-		LRK54_RS04935	0.73	+0.0
1,046,179	-		LRK54_RS04935	0.73	-0.0
1,046,179	-		LRK54_RS04935	0.73	+0.6
1,046,179	-		LRK54_RS04935	0.73	+0.2
1,046,179	-		LRK54_RS04935	0.73	-0.2
1,046,179	-		LRK54_RS04935	0.73	+0.4
1,046,179	-		LRK54_RS04935	0.73	-0.5
1,046,179	-		LRK54_RS04935	0.73	+0.4
1,046,190	+		LRK54_RS04935	0.75	+0.5
1,046,190	+		LRK54_RS04935	0.75	+0.4
1,046,190	+		LRK54_RS04935	0.75	-0.4
1,046,190	+		LRK54_RS04935	0.75	+0.4
1,046,217	+		LRK54_RS04935	0.79	-0.0
1,046,218	-		LRK54_RS04935	0.79	-0.3
1,046,218	-		LRK54_RS04935	0.79	-1.3
1,046,218	-		LRK54_RS04935	0.79	+0.3
1,046,406	+				-0.1
1,046,406	+				-1.5
1,046,406	+				+0.1
1,046,407	-				+0.8
1,046,407	-				-0.3
1,046,407	-				+0.3
1,046,407	-				-0.5
1,046,407	-				-0.0
1,046,586	+		LRK54_RS04940	0.46	-0.2
1,046,586	+		LRK54_RS04940	0.46	-0.3
1,046,586	+		LRK54_RS04940	0.46	+0.4
1,046,587	-		LRK54_RS04940	0.46	+0.2
1,046,736	+				-0.5
1,046,736	+				+0.5
1,046,736	+				-1.3
1,046,736	+				-0.5
1,046,736	+				+0.4
1,046,736	+				+0.2
1,046,736	+				+0.8
1,046,737	-				-0.5
1,046,737	-				+0.9
1,046,737	-				+0.2
1,046,737	-				-1.0
1,046,737	-				+0.3
1,046,821	+				-1.4
1,046,821	+				+0.7
1,046,821	+				+0.4
1,046,821	+				-1.3
1,046,821	+				-0.0
1,046,821	+				+0.4
1,046,821	+				+0.6
1,046,821	+				-0.3
1,046,821	+				+1.3
1,046,822	-				-0.7
1,046,822	-				+0.2
1,046,822	-				+0.1
1,046,856	+				+1.2
1,046,856	+				-0.5
1,046,856	+				+0.3
1,046,856	+				+1.0
1,046,856	+				+0.5
1,046,856	+				-1.3
1,046,856	+				+0.2
1,046,856	+				-1.0
1,046,856	+				-0.2
1,046,856	+				+0.2
1,046,857	-				+0.2
1,046,857	-				-0.7
1,046,857	-				-0.4
1,046,857	-				+0.6
1,046,857	-				-0.5
1,046,857	-				-0.2
1,046,857	-				-0.5
1,046,859	+				+0.4
1,046,859	+				+0.2
1,046,859	+				+0.6
1,046,860	-				-1.6
1,046,860	-				-0.8
1,046,860	-				-0.3
1,046,949	+				+1.1
1,046,950	-				+0.1
1,046,957	+				+1.3
1,046,957	+				-0.4
1,046,958	+				+0.7
1,046,958	-				+0.2
1,046,958	-				+0.3
1,046,959	+				+0.2
1,046,959	+				+0.6
1,046,959	+				+0.0
1,046,959	+				+0.5
1,046,959	+				+0.7
1,046,959	+				+0.9
1,046,959	+				+0.6
1,046,959	+				+0.5
1,046,959	+				+1.2
1,046,959	+				+0.5
1,046,959	+				+0.2
1,046,959	+				+0.7
1,046,960	-				+1.1
1,046,960	-				-0.3
1,046,960	-				-0.1
1,046,960	-				-2.1
1,046,960	-				+0.2
1,046,960	-				+0.4
1,046,960	-				+0.5
1,046,960	-				-0.3
1,046,960	-				-0.9
1,046,960	-				-0.2
1,046,965	+				-0.3
1,046,966	-				+1.1
1,046,991	-				-0.8
1,046,991	-				-0.1
1,046,991	-				-1.5
1,047,542	+		LRK54_RS04945	0.21	-0.2
1,047,542	+		LRK54_RS04945	0.21	+0.6
1,047,543	-		LRK54_RS04945	0.21	-0.4
1,047,543	-		LRK54_RS04945	0.21	-0.5
1,047,543	-		LRK54_RS04945	0.21	-0.7
1,047,629	+		LRK54_RS04945	0.25	-0.2
1,047,629	+		LRK54_RS04945	0.25	-1.0
1,047,629	+		LRK54_RS04945	0.25	-0.5
1,047,630	-		LRK54_RS04945	0.25	-0.0
1,047,630	-		LRK54_RS04945	0.25	-1.1
1,047,735	-		LRK54_RS04945	0.29	-0.9
1,047,735	-		LRK54_RS04945	0.29	-1.3
1,047,782	+		LRK54_RS04945	0.31	-1.7
1,047,782	+		LRK54_RS04945	0.31	-0.8
1,047,782	+		LRK54_RS04945	0.31	-0.7
1,047,782	+		LRK54_RS04945	0.31	-0.4
1,047,782	+		LRK54_RS04945	0.31	-0.4
1,047,783	-		LRK54_RS04945	0.31	+0.6
1,047,783	-		LRK54_RS04945	0.31	-1.3
1,047,783	-		LRK54_RS04945	0.31	-1.9
1,047,783	-		LRK54_RS04945	0.31	+0.1
1,047,783	-		LRK54_RS04945	0.31	-0.6
1,047,783	-		LRK54_RS04945	0.31	-0.2
1,047,783	-		LRK54_RS04945	0.31	+0.4
1,047,783	-		LRK54_RS04945	0.31	-0.2
1,047,783	-		LRK54_RS04945	0.31	-2.0
1,047,783	-		LRK54_RS04945	0.31	+0.1
1,047,851	+		LRK54_RS04945	0.34	-0.9
1,047,851	+		LRK54_RS04945	0.34	-2.5
1,047,852	-		LRK54_RS04945	0.34	-0.7
1,047,878	+		LRK54_RS04945	0.35	-0.8
1,047,878	+		LRK54_RS04945	0.35	-0.1
1,047,879	-		LRK54_RS04945	0.35	-2.3
1,047,879	-		LRK54_RS04945	0.35	-0.6
1,047,879	-		LRK54_RS04945	0.35	-0.5
1,047,879	-		LRK54_RS04945	0.35	-1.1
1,047,879	-		LRK54_RS04945	0.35	+1.4
1,047,926	+		LRK54_RS04945	0.37	-1.5
1,047,926	+		LRK54_RS04945	0.37	-2.7
1,047,926	+		LRK54_RS04945	0.37	-1.3
1,047,926	+		LRK54_RS04945	0.37	+0.2
1,047,927	-		LRK54_RS04945	0.37	-0.8
1,047,927	-		LRK54_RS04945	0.37	-0.4
1,047,965	+		LRK54_RS04945	0.39	-2.4
1,047,966	-		LRK54_RS04945	0.39	-1.3
1,048,049	+		LRK54_RS04945	0.43	-0.7
1,048,049	+		LRK54_RS04945	0.43	-0.7
1,048,049	+		LRK54_RS04945	0.43	-2.2
1,048,049	+		LRK54_RS04945	0.43	+0.1
1,048,049	+		LRK54_RS04945	0.43	-1.1
1,048,049	+		LRK54_RS04945	0.43	-0.7
1,048,049	+		LRK54_RS04945	0.43	-2.4
1,048,050	-		LRK54_RS04945	0.43	-1.3
1,048,050	-		LRK54_RS04945	0.43	-0.5
1,048,050	-		LRK54_RS04945	0.43	-0.2
1,048,050	-		LRK54_RS04945	0.43	-1.5
1,048,050	-		LRK54_RS04945	0.43	-0.9
1,048,050	-		LRK54_RS04945	0.43	-0.6
1,048,050	-		LRK54_RS04945	0.43	-1.8
1,048,050	-		LRK54_RS04945	0.43	-1.4
1,048,076	+		LRK54_RS04945	0.44	-2.1
1,048,076	+		LRK54_RS04945	0.44	-0.8
1,048,076	+		LRK54_RS04945	0.44	-0.6
1,048,076	+		LRK54_RS04945	0.44	-0.7
1,048,077	-		LRK54_RS04945	0.44	-0.4
1,048,077	-		LRK54_RS04945	0.44	+0.8
1,048,077	-		LRK54_RS04945	0.44	-0.7
1,048,077	-		LRK54_RS04945	0.44	+0.1
1,048,077	-		LRK54_RS04945	0.44	-1.4
1,048,077	-		LRK54_RS04945	0.44	-0.6
1,048,077	-		LRK54_RS04945	0.44	-1.8
1,048,078	-		LRK54_RS04945	0.44	-0.6
1,048,154	+		LRK54_RS04945	0.47	-0.6
1,048,154	+		LRK54_RS04945	0.47	+0.3
1,048,154	+		LRK54_RS04945	0.47	-1.5
1,048,154	+		LRK54_RS04945	0.47	+0.4
1,048,154	+		LRK54_RS04945	0.47	-2.6
1,048,155	-		LRK54_RS04945	0.47	-0.9
1,048,155	-		LRK54_RS04945	0.47	-0.7
1,048,155	-		LRK54_RS04945	0.47	-0.9
1,048,155	-		LRK54_RS04945	0.47	-0.7
1,048,155	-		LRK54_RS04945	0.47	-2.1
1,048,262	+		LRK54_RS04945	0.52	-0.7
1,048,277	+		LRK54_RS04945	0.52	-0.5
1,048,277	+		LRK54_RS04945	0.52	-0.1
1,048,277	+		LRK54_RS04945	0.52	-1.8
1,048,277	+		LRK54_RS04945	0.52	+0.4
1,048,277	+		LRK54_RS04945	0.52	-0.6
1,048,277	+		LRK54_RS04945	0.52	-1.4
1,048,277	+		LRK54_RS04945	0.52	-0.5
1,048,277	+		LRK54_RS04945	0.52	-0.2
1,048,277	+		LRK54_RS04945	0.52	-1.9
1,048,277	+		LRK54_RS04945	0.52	-1.7
1,048,277	+		LRK54_RS04945	0.52	-1.0
1,048,277	+		LRK54_RS04945	0.52	-2.4
1,048,277	+		LRK54_RS04945	0.52	-0.9
1,048,277	+		LRK54_RS04945	0.52	-1.9
1,048,278	-		LRK54_RS04945	0.52	-2.4
1,048,278	-		LRK54_RS04945	0.52	-0.8
1,048,278	-		LRK54_RS04945	0.52	-0.4
1,048,278	-		LRK54_RS04945	0.52	+1.6
1,048,278	-		LRK54_RS04945	0.52	-0.6
1,048,278	-		LRK54_RS04945	0.52	-0.3
1,048,278	-		LRK54_RS04945	0.52	-1.4
1,048,278	-		LRK54_RS04945	0.52	+0.4
1,048,278	-		LRK54_RS04945	0.52	-0.2
1,048,278	-		LRK54_RS04945	0.52	+0.1
1,048,278	-		LRK54_RS04945	0.52	-0.6
1,048,278	-		LRK54_RS04945	0.52	-1.4
1,048,278	-		LRK54_RS04945	0.52	-0.4
1,048,278	-		LRK54_RS04945	0.52	-1.0
1,048,278	-		LRK54_RS04945	0.52	-0.1
1,048,278	-		LRK54_RS04945	0.52	-1.7
1,048,278	-		LRK54_RS04945	0.52	-0.6
1,048,278	-		LRK54_RS04945	0.52	+0.2
1,048,278	-		LRK54_RS04945	0.52	-1.4
1,048,307	+		LRK54_RS04945	0.53	-0.8
1,048,307	+		LRK54_RS04945	0.53	-1.8
1,048,308	-		LRK54_RS04945	0.54	-0.8
1,048,308	-		LRK54_RS04945	0.54	-1.4
1,048,308	-		LRK54_RS04945	0.54	+0.1
1,048,308	-		LRK54_RS04945	0.54	-1.3
1,048,308	-		LRK54_RS04945	0.54	-1.7
1,048,308	-		LRK54_RS04945	0.54	-1.2
1,048,308	-		LRK54_RS04945	0.54	+0.0
1,048,308	-		LRK54_RS04945	0.54	-1.5
1,048,379	+		LRK54_RS04945	0.57	-1.1
1,048,379	+		LRK54_RS04945	0.57	-0.9
1,048,379	+		LRK54_RS04945	0.57	-1.0
1,048,379	+		LRK54_RS04945	0.57	-1.1
1,048,379	+		LRK54_RS04945	0.57	-1.3
1,048,380	-		LRK54_RS04945	0.57	-1.1
1,048,380	-		LRK54_RS04945	0.57	-1.0
1,048,380	-		LRK54_RS04945	0.57	-0.3
1,048,380	-		LRK54_RS04945	0.57	-0.1
1,048,380	-		LRK54_RS04945	0.57	+0.6
1,048,380	-		LRK54_RS04945	0.57	+0.1
1,048,380	-		LRK54_RS04945	0.57	+0.1
1,048,380	-		LRK54_RS04945	0.57	+0.5
1,048,380	-		LRK54_RS04945	0.57	-1.7
1,048,380	-		LRK54_RS04945	0.57	-1.3
1,048,388	+		LRK54_RS04945	0.57	-0.7
1,048,388	+		LRK54_RS04945	0.57	-1.0
1,048,388	+		LRK54_RS04945	0.57	-0.5
1,048,388	+		LRK54_RS04945	0.57	-1.1
1,048,389	-		LRK54_RS04945	0.57	+0.2
1,048,389	-		LRK54_RS04945	0.57	-0.3
1,048,389	-		LRK54_RS04945	0.57	-0.3
1,048,389	-		LRK54_RS04945	0.57	+0.1
1,048,440	+		LRK54_RS04945	0.59	-1.6
1,048,441	-		LRK54_RS04945	0.59	-1.4
1,048,441	-		LRK54_RS04945	0.59	-0.6
1,048,441	-		LRK54_RS04945	0.59	-0.7
1,048,454	+		LRK54_RS04945	0.60	+0.6
1,048,454	+		LRK54_RS04945	0.60	-0.5
1,048,454	+		LRK54_RS04945	0.60	-1.4
1,048,455	-		LRK54_RS04945	0.60	+0.2
1,048,455	-		LRK54_RS04945	0.60	+0.4
1,048,499	+		LRK54_RS04945	0.62	-0.8
1,048,499	+		LRK54_RS04945	0.62	-2.2
1,048,499	+		LRK54_RS04945	0.62	+1.0
1,048,500	-		LRK54_RS04945	0.62	+0.2
1,048,500	-		LRK54_RS04945	0.62	+0.4
1,048,500	-		LRK54_RS04945	0.62	-0.4
1,048,500	-		LRK54_RS04945	0.62	+0.2
1,048,577	+		LRK54_RS04945	0.65	-0.6
1,048,577	+		LRK54_RS04945	0.65	+0.1
1,048,577	+		LRK54_RS04945	0.65	-3.4
1,048,577	+		LRK54_RS04945	0.65	-1.8
1,048,577	+		LRK54_RS04945	0.65	-0.2
1,048,577	+		LRK54_RS04945	0.65	-1.9
1,048,577	+		LRK54_RS04945	0.65	-1.1
1,048,577	+		LRK54_RS04945	0.65	+0.3
1,048,577	+		LRK54_RS04945	0.65	-0.6
1,048,578	-		LRK54_RS04945	0.65	-0.5
1,048,578	-		LRK54_RS04945	0.65	-0.8
1,048,578	-		LRK54_RS04945	0.65	-0.4
1,048,578	-		LRK54_RS04945	0.65	-0.5
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