Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS04095

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS04090 and CA265_RS04095 are separated by 675 nucleotidesCA265_RS04095 and CA265_RS04100 are separated by 104 nucleotidesCA265_RS04100 and CA265_RS04105 overlap by 17 nucleotides CA265_RS04090: CA265_RS04090 - transcriptional regulator, at 984,025 to 984,471 _RS04090 CA265_RS04095: CA265_RS04095 - nitrite reductase, at 985,147 to 987,237 _RS04095 CA265_RS04100: CA265_RS04100 - uroporphyrinogen-III C-methyltransferase, at 987,342 to 988,112 _RS04100 CA265_RS04105: CA265_RS04105 - siroheme synthase, at 988,096 to 989,607 _RS04105 Position (kb) 985 986 987 988Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 984.388 kb on - strand, within CA265_RS04090at 984.460 kb on - strandat 984.524 kb on + strandat 984.529 kb on + strandat 984.561 kb on - strandat 984.624 kb on + strandat 984.678 kb on - strandat 984.709 kb on - strandat 984.762 kb on + strandat 984.810 kb on - strandat 984.823 kb on + strandat 984.823 kb on + strandat 984.843 kb on - strandat 984.846 kb on + strandat 984.851 kb on - strandat 985.091 kb on + strandat 985.131 kb on - strandat 985.136 kb on + strandat 985.146 kb on + strandat 985.271 kb on + strandat 985.323 kb on + strandat 985.324 kb on - strandat 985.362 kb on - strand, within CA265_RS04095at 985.409 kb on + strand, within CA265_RS04095at 985.438 kb on + strand, within CA265_RS04095at 985.439 kb on - strand, within CA265_RS04095at 985.443 kb on - strand, within CA265_RS04095at 985.479 kb on - strand, within CA265_RS04095at 985.492 kb on - strand, within CA265_RS04095at 985.524 kb on - strand, within CA265_RS04095at 985.610 kb on - strand, within CA265_RS04095at 985.621 kb on - strand, within CA265_RS04095at 985.678 kb on - strand, within CA265_RS04095at 985.699 kb on - strand, within CA265_RS04095at 985.776 kb on - strand, within CA265_RS04095at 985.806 kb on - strand, within CA265_RS04095at 985.843 kb on - strand, within CA265_RS04095at 985.917 kb on - strand, within CA265_RS04095at 985.947 kb on - strand, within CA265_RS04095at 985.947 kb on - strand, within CA265_RS04095at 986.007 kb on + strand, within CA265_RS04095at 986.164 kb on - strand, within CA265_RS04095at 986.207 kb on - strand, within CA265_RS04095at 986.246 kb on + strand, within CA265_RS04095at 986.337 kb on - strand, within CA265_RS04095at 986.343 kb on + strand, within CA265_RS04095at 986.368 kb on - strand, within CA265_RS04095at 986.368 kb on - strand, within CA265_RS04095at 986.374 kb on - strand, within CA265_RS04095at 986.383 kb on - strand, within CA265_RS04095at 986.429 kb on - strand, within CA265_RS04095at 986.604 kb on + strand, within CA265_RS04095at 986.604 kb on + strand, within CA265_RS04095at 986.634 kb on - strand, within CA265_RS04095at 986.634 kb on - strand, within CA265_RS04095at 986.637 kb on + strand, within CA265_RS04095at 986.638 kb on - strand, within CA265_RS04095at 986.638 kb on - strand, within CA265_RS04095at 986.682 kb on - strand, within CA265_RS04095at 986.731 kb on + strand, within CA265_RS04095at 986.787 kb on - strand, within CA265_RS04095at 986.829 kb on - strand, within CA265_RS04095at 986.876 kb on + strand, within CA265_RS04095at 986.898 kb on - strand, within CA265_RS04095at 986.898 kb on - strand, within CA265_RS04095at 986.976 kb on + strand, within CA265_RS04095at 986.981 kb on - strand, within CA265_RS04095at 987.022 kb on - strand, within CA265_RS04095at 987.034 kb on - strandat 987.034 kb on - strandat 987.077 kb on - strandat 987.081 kb on - strandat 987.129 kb on - strandat 987.251 kb on - strandat 987.251 kb on - strandat 987.416 kb on - strandat 987.416 kb on - strandat 987.457 kb on - strand, within CA265_RS04100at 987.676 kb on - strand, within CA265_RS04100at 987.676 kb on - strand, within CA265_RS04100at 987.676 kb on - strand, within CA265_RS04100at 987.725 kb on - strand, within CA265_RS04100at 987.825 kb on + strand, within CA265_RS04100at 987.974 kb on - strand, within CA265_RS04100at 988.020 kb on - strand, within CA265_RS04100at 988.023 kb on - strand, within CA265_RS04100at 988.088 kb on + strandat 988.095 kb on + strandat 988.096 kb on - strandat 988.178 kb on + strandat 988.197 kb on + strandat 988.202 kb on + strandat 988.205 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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984,388 - CA265_RS04090 0.81 -0.6
984,460 - -2.4
984,524 + -0.4
984,529 + +0.0
984,561 - -1.3
984,624 + -0.4
984,678 - -0.7
984,709 - +0.4
984,762 + +0.1
984,810 - -0.1
984,823 + -0.7
984,823 + -0.6
984,843 - -1.7
984,846 + +0.2
984,851 - +0.3
985,091 + -0.4
985,131 - -2.9
985,136 + -0.5
985,146 + -0.6
985,271 + -1.5
985,323 + -0.3
985,324 - -3.3
985,362 - CA265_RS04095 0.10 -3.1
985,409 + CA265_RS04095 0.13 -1.5
985,438 + CA265_RS04095 0.14 +1.7
985,439 - CA265_RS04095 0.14 -4.5
985,443 - CA265_RS04095 0.14 -3.9
985,479 - CA265_RS04095 0.16 -2.1
985,492 - CA265_RS04095 0.16 -3.8
985,524 - CA265_RS04095 0.18 -4.9
985,610 - CA265_RS04095 0.22 -2.6
985,621 - CA265_RS04095 0.23 -1.5
985,678 - CA265_RS04095 0.25 -1.1
985,699 - CA265_RS04095 0.26 -3.7
985,776 - CA265_RS04095 0.30 -3.6
985,806 - CA265_RS04095 0.32 -3.8
985,843 - CA265_RS04095 0.33 -3.5
985,917 - CA265_RS04095 0.37 -3.3
985,947 - CA265_RS04095 0.38 -2.6
985,947 - CA265_RS04095 0.38 -2.5
986,007 + CA265_RS04095 0.41 +0.1
986,164 - CA265_RS04095 0.49 -3.1
986,207 - CA265_RS04095 0.51 -3.4
986,246 + CA265_RS04095 0.53 -2.0
986,337 - CA265_RS04095 0.57 -4.0
986,343 + CA265_RS04095 0.57 -3.5
986,368 - CA265_RS04095 0.58 -4.9
986,368 - CA265_RS04095 0.58 -4.2
986,374 - CA265_RS04095 0.59 -3.4
986,383 - CA265_RS04095 0.59 -4.6
986,429 - CA265_RS04095 0.61 -4.1
986,604 + CA265_RS04095 0.70 -0.3
986,604 + CA265_RS04095 0.70 -0.3
986,634 - CA265_RS04095 0.71 -1.0
986,634 - CA265_RS04095 0.71 -4.2
986,637 + CA265_RS04095 0.71 -3.1
986,638 - CA265_RS04095 0.71 -4.2
986,638 - CA265_RS04095 0.71 -4.3
986,682 - CA265_RS04095 0.73 -5.4
986,731 + CA265_RS04095 0.76 -0.3
986,787 - CA265_RS04095 0.78 -4.4
986,829 - CA265_RS04095 0.80 -2.1
986,876 + CA265_RS04095 0.83 -2.3
986,898 - CA265_RS04095 0.84 -2.6
986,898 - CA265_RS04095 0.84 -4.1
986,976 + CA265_RS04095 0.87 +0.1
986,981 - CA265_RS04095 0.88 -2.0
987,022 - CA265_RS04095 0.90 -5.0
987,034 - -4.7
987,034 - -3.2
987,077 - -1.4
987,081 - -4.0
987,129 - -3.5
987,251 - -4.1
987,251 - -4.8
987,416 - -1.7
987,416 - -4.7
987,457 - CA265_RS04100 0.15 -1.1
987,676 - CA265_RS04100 0.43 -2.8
987,676 - CA265_RS04100 0.43 -3.4
987,676 - CA265_RS04100 0.43 -3.3
987,725 - CA265_RS04100 0.50 -0.6
987,825 + CA265_RS04100 0.63 -0.6
987,974 - CA265_RS04100 0.82 -3.2
988,020 - CA265_RS04100 0.88 -4.7
988,023 - CA265_RS04100 0.88 -1.5
988,088 + -0.5
988,095 + -2.0
988,096 - -3.4
988,178 + -3.4
988,197 + -3.2
988,202 + -4.0
988,205 + -3.2

Or see this region's nucleotide sequence