Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22520

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22515 and ABZR87_RS22520 are separated by 148 nucleotidesABZR87_RS22520 and ABZR87_RS22525 are separated by 117 nucleotides ABZR87_RS22515: ABZR87_RS22515 - nitronate monooxygenase family protein, at 1,409,168 to 1,410,238 _RS22515 ABZR87_RS22520: ABZR87_RS22520 - ABATE domain-containing protein, at 1,410,387 to 1,410,968 _RS22520 ABZR87_RS22525: ABZR87_RS22525 - 3-oxoacyl-ACP reductase family protein, at 1,411,086 to 1,411,859 _RS22525 Position (kb) 1410 1411Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1409.505 kb on + strand, within ABZR87_RS22515at 1409.505 kb on + strand, within ABZR87_RS22515at 1409.505 kb on + strand, within ABZR87_RS22515at 1409.506 kb on - strand, within ABZR87_RS22515at 1409.506 kb on - strand, within ABZR87_RS22515at 1409.720 kb on + strand, within ABZR87_RS22515at 1409.720 kb on + strand, within ABZR87_RS22515at 1409.721 kb on - strand, within ABZR87_RS22515at 1409.721 kb on - strand, within ABZR87_RS22515at 1409.946 kb on + strand, within ABZR87_RS22515at 1409.949 kb on + strand, within ABZR87_RS22515at 1409.950 kb on - strand, within ABZR87_RS22515at 1409.950 kb on - strand, within ABZR87_RS22515at 1410.055 kb on - strand, within ABZR87_RS22515at 1410.274 kb on + strandat 1410.342 kb on - strandat 1410.581 kb on - strand, within ABZR87_RS22520at 1410.581 kb on - strand, within ABZR87_RS22520at 1410.871 kb on - strand, within ABZR87_RS22520at 1411.228 kb on - strand, within ABZR87_RS22525at 1411.228 kb on - strand, within ABZR87_RS22525at 1411.228 kb on - strand, within ABZR87_RS22525at 1411.581 kb on + strand, within ABZR87_RS22525at 1411.582 kb on - strand, within ABZR87_RS22525at 1411.582 kb on - strand, within ABZR87_RS22525at 1411.630 kb on + strand, within ABZR87_RS22525at 1411.630 kb on + strand, within ABZR87_RS22525at 1411.631 kb on - strand, within ABZR87_RS22525at 1411.857 kb on + strandat 1411.857 kb on + strandat 1411.858 kb on - strandat 1411.858 kb on - strandat 1411.904 kb on + strandat 1411.905 kb on - strandat 1411.905 kb on - strandat 1411.933 kb on + strandat 1411.933 kb on + strandat 1411.934 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,409,505 + ABZR87_RS22515 0.31 -0.8
1,409,505 + ABZR87_RS22515 0.31 -1.4
1,409,505 + ABZR87_RS22515 0.31 -1.1
1,409,506 - ABZR87_RS22515 0.32 +0.9
1,409,506 - ABZR87_RS22515 0.32 +0.1
1,409,720 + ABZR87_RS22515 0.52 -0.9
1,409,720 + ABZR87_RS22515 0.52 +2.6
1,409,721 - ABZR87_RS22515 0.52 -0.5
1,409,721 - ABZR87_RS22515 0.52 -0.5
1,409,946 + ABZR87_RS22515 0.73 +0.1
1,409,949 + ABZR87_RS22515 0.73 -0.2
1,409,950 - ABZR87_RS22515 0.73 -1.1
1,409,950 - ABZR87_RS22515 0.73 -0.0
1,410,055 - ABZR87_RS22515 0.83 +1.1
1,410,274 + +0.1
1,410,342 - -2.5
1,410,581 - ABZR87_RS22520 0.33 -1.3
1,410,581 - ABZR87_RS22520 0.33 -1.4
1,410,871 - ABZR87_RS22520 0.83 -0.9
1,411,228 - ABZR87_RS22525 0.18 -0.3
1,411,228 - ABZR87_RS22525 0.18 -1.9
1,411,228 - ABZR87_RS22525 0.18 +0.2
1,411,581 + ABZR87_RS22525 0.64 +0.4
1,411,582 - ABZR87_RS22525 0.64 -1.8
1,411,582 - ABZR87_RS22525 0.64 +0.2
1,411,630 + ABZR87_RS22525 0.70 -3.2
1,411,630 + ABZR87_RS22525 0.70 -1.2
1,411,631 - ABZR87_RS22525 0.70 -2.1
1,411,857 + +0.4
1,411,857 + +0.7
1,411,858 - -1.0
1,411,858 - -3.6
1,411,904 + -1.5
1,411,905 - +1.9
1,411,905 - -0.2
1,411,933 + -1.4
1,411,933 + -3.9
1,411,934 - -0.5

Or see this region's nucleotide sequence