Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS22515 and ABZR87_RS22520 are separated by 148 nucleotides ABZR87_RS22520 and ABZR87_RS22525 are separated by 117 nucleotides
ABZR87_RS22515: ABZR87_RS22515 - nitronate monooxygenase family protein, at 1,409,168 to 1,410,238
_RS22515
ABZR87_RS22520: ABZR87_RS22520 - ABATE domain-containing protein, at 1,410,387 to 1,410,968
_RS22520
ABZR87_RS22525: ABZR87_RS22525 - 3-oxoacyl-ACP reductase family protein, at 1,411,086 to 1,411,859
_RS22525
Position (kb)
1410
1411 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1409.505 kb on + strand, within ABZR87_RS22515 at 1409.505 kb on + strand, within ABZR87_RS22515 at 1409.505 kb on + strand, within ABZR87_RS22515 at 1409.506 kb on - strand, within ABZR87_RS22515 at 1409.506 kb on - strand, within ABZR87_RS22515 at 1409.720 kb on + strand, within ABZR87_RS22515 at 1409.720 kb on + strand, within ABZR87_RS22515 at 1409.721 kb on - strand, within ABZR87_RS22515 at 1409.721 kb on - strand, within ABZR87_RS22515 at 1409.946 kb on + strand, within ABZR87_RS22515 at 1409.949 kb on + strand, within ABZR87_RS22515 at 1409.950 kb on - strand, within ABZR87_RS22515 at 1409.950 kb on - strand, within ABZR87_RS22515 at 1410.055 kb on - strand, within ABZR87_RS22515 at 1410.274 kb on + strand at 1410.342 kb on - strand at 1410.581 kb on - strand, within ABZR87_RS22520 at 1410.581 kb on - strand, within ABZR87_RS22520 at 1410.871 kb on - strand, within ABZR87_RS22520 at 1411.228 kb on - strand, within ABZR87_RS22525 at 1411.228 kb on - strand, within ABZR87_RS22525 at 1411.228 kb on - strand, within ABZR87_RS22525 at 1411.581 kb on + strand, within ABZR87_RS22525 at 1411.582 kb on - strand, within ABZR87_RS22525 at 1411.582 kb on - strand, within ABZR87_RS22525 at 1411.630 kb on + strand, within ABZR87_RS22525 at 1411.630 kb on + strand, within ABZR87_RS22525 at 1411.631 kb on - strand, within ABZR87_RS22525 at 1411.857 kb on + strand at 1411.857 kb on + strand at 1411.858 kb on - strand at 1411.858 kb on - strand at 1411.904 kb on + strand at 1411.905 kb on - strand at 1411.905 kb on - strand at 1411.933 kb on + strand at 1411.933 kb on + strand at 1411.934 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 1,409,505 + ABZR87_RS22515 0.31 -0.8 1,409,505 + ABZR87_RS22515 0.31 -1.4 1,409,505 + ABZR87_RS22515 0.31 -1.1 1,409,506 - ABZR87_RS22515 0.32 +0.9 1,409,506 - ABZR87_RS22515 0.32 +0.1 1,409,720 + ABZR87_RS22515 0.52 -0.9 1,409,720 + ABZR87_RS22515 0.52 +2.6 1,409,721 - ABZR87_RS22515 0.52 -0.5 1,409,721 - ABZR87_RS22515 0.52 -0.5 1,409,946 + ABZR87_RS22515 0.73 +0.1 1,409,949 + ABZR87_RS22515 0.73 -0.2 1,409,950 - ABZR87_RS22515 0.73 -1.1 1,409,950 - ABZR87_RS22515 0.73 -0.0 1,410,055 - ABZR87_RS22515 0.83 +1.1 1,410,274 + +0.1 1,410,342 - -2.5 1,410,581 - ABZR87_RS22520 0.33 -1.3 1,410,581 - ABZR87_RS22520 0.33 -1.4 1,410,871 - ABZR87_RS22520 0.83 -0.9 1,411,228 - ABZR87_RS22525 0.18 -0.3 1,411,228 - ABZR87_RS22525 0.18 -1.9 1,411,228 - ABZR87_RS22525 0.18 +0.2 1,411,581 + ABZR87_RS22525 0.64 +0.4 1,411,582 - ABZR87_RS22525 0.64 -1.8 1,411,582 - ABZR87_RS22525 0.64 +0.2 1,411,630 + ABZR87_RS22525 0.70 -3.2 1,411,630 + ABZR87_RS22525 0.70 -1.2 1,411,631 - ABZR87_RS22525 0.70 -2.1 1,411,857 + +0.4 1,411,857 + +0.7 1,411,858 - -1.0 1,411,858 - -3.6 1,411,904 + -1.5 1,411,905 - +1.9 1,411,905 - -0.2 1,411,933 + -1.4 1,411,933 + -3.9 1,411,934 - -0.5
Or see this region's nucleotide sequence