Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21225 and ABZR87_RS21230 are separated by 111 nucleotides ABZR87_RS21230 and ABZR87_RS21235 are separated by 86 nucleotides ABZR87_RS21235 and ABZR87_RS21240 are separated by 3 nucleotides
ABZR87_RS21225: ABZR87_RS21225 - LysR family transcriptional regulator, at 1,144,488 to 1,145,438
_RS21225
ABZR87_RS21230: ABZR87_RS21230 - 3-oxoadipate enol-lactonase, at 1,145,550 to 1,146,365
_RS21230
ABZR87_RS21235: ABZR87_RS21235 - TetR/AcrR family transcriptional regulator, at 1,146,452 to 1,147,090
_RS21235
ABZR87_RS21240: ABZR87_RS21240 - 1,2-phenylacetyl-CoA epoxidase subunit PaaE, at 1,147,094 to 1,148,194
_RS21240
Position (kb)
1145
1146
1147 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1144.808 kb on - strand, within ABZR87_RS21225 at 1145.296 kb on - strand, within ABZR87_RS21225 at 1145.474 kb on + strand at 1145.474 kb on + strand at 1145.840 kb on + strand, within ABZR87_RS21230 at 1145.840 kb on + strand, within ABZR87_RS21230 at 1145.841 kb on - strand, within ABZR87_RS21230 at 1145.841 kb on - strand, within ABZR87_RS21230 at 1145.841 kb on - strand, within ABZR87_RS21230 at 1145.955 kb on + strand, within ABZR87_RS21230 at 1146.022 kb on + strand, within ABZR87_RS21230 at 1146.023 kb on - strand, within ABZR87_RS21230 at 1146.023 kb on - strand, within ABZR87_RS21230 at 1146.417 kb on - strand at 1146.539 kb on + strand, within ABZR87_RS21235 at 1146.600 kb on - strand, within ABZR87_RS21235 at 1146.600 kb on - strand, within ABZR87_RS21235 at 1146.606 kb on - strand, within ABZR87_RS21235 at 1146.606 kb on - strand, within ABZR87_RS21235 at 1146.608 kb on + strand, within ABZR87_RS21235 at 1146.609 kb on - strand, within ABZR87_RS21235 at 1146.651 kb on - strand, within ABZR87_RS21235 at 1146.745 kb on + strand, within ABZR87_RS21235 at 1146.809 kb on + strand, within ABZR87_RS21235 at 1146.999 kb on - strand, within ABZR87_RS21235 at 1147.107 kb on + strand at 1147.267 kb on - strand, within ABZR87_RS21240
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 1,144,808 - ABZR87_RS21225 0.34 -0.3 1,145,296 - ABZR87_RS21225 0.85 -1.1 1,145,474 + -0.7 1,145,474 + +0.1 1,145,840 + ABZR87_RS21230 0.36 -3.0 1,145,840 + ABZR87_RS21230 0.36 +1.8 1,145,841 - ABZR87_RS21230 0.36 -0.3 1,145,841 - ABZR87_RS21230 0.36 -3.1 1,145,841 - ABZR87_RS21230 0.36 -3.7 1,145,955 + ABZR87_RS21230 0.50 +2.1 1,146,022 + ABZR87_RS21230 0.58 +2.2 1,146,023 - ABZR87_RS21230 0.58 +0.6 1,146,023 - ABZR87_RS21230 0.58 -1.6 1,146,417 - +0.1 1,146,539 + ABZR87_RS21235 0.14 -0.5 1,146,600 - ABZR87_RS21235 0.23 +0.8 1,146,600 - ABZR87_RS21235 0.23 -0.9 1,146,606 - ABZR87_RS21235 0.24 -3.5 1,146,606 - ABZR87_RS21235 0.24 -0.3 1,146,608 + ABZR87_RS21235 0.24 +1.5 1,146,609 - ABZR87_RS21235 0.25 +1.2 1,146,651 - ABZR87_RS21235 0.31 -0.9 1,146,745 + ABZR87_RS21235 0.46 -0.5 1,146,809 + ABZR87_RS21235 0.56 -1.8 1,146,999 - ABZR87_RS21235 0.86 -3.6 1,147,107 + +2.0 1,147,267 - ABZR87_RS21240 0.16 +2.7
Or see this region's nucleotide sequence