Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21230

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21225 and ABZR87_RS21230 are separated by 111 nucleotidesABZR87_RS21230 and ABZR87_RS21235 are separated by 86 nucleotidesABZR87_RS21235 and ABZR87_RS21240 are separated by 3 nucleotides ABZR87_RS21225: ABZR87_RS21225 - LysR family transcriptional regulator, at 1,144,488 to 1,145,438 _RS21225 ABZR87_RS21230: ABZR87_RS21230 - 3-oxoadipate enol-lactonase, at 1,145,550 to 1,146,365 _RS21230 ABZR87_RS21235: ABZR87_RS21235 - TetR/AcrR family transcriptional regulator, at 1,146,452 to 1,147,090 _RS21235 ABZR87_RS21240: ABZR87_RS21240 - 1,2-phenylacetyl-CoA epoxidase subunit PaaE, at 1,147,094 to 1,148,194 _RS21240 Position (kb) 1145 1146 1147Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1144.808 kb on - strand, within ABZR87_RS21225at 1145.296 kb on - strand, within ABZR87_RS21225at 1145.474 kb on + strandat 1145.474 kb on + strandat 1145.840 kb on + strand, within ABZR87_RS21230at 1145.840 kb on + strand, within ABZR87_RS21230at 1145.841 kb on - strand, within ABZR87_RS21230at 1145.841 kb on - strand, within ABZR87_RS21230at 1145.841 kb on - strand, within ABZR87_RS21230at 1145.955 kb on + strand, within ABZR87_RS21230at 1146.022 kb on + strand, within ABZR87_RS21230at 1146.023 kb on - strand, within ABZR87_RS21230at 1146.023 kb on - strand, within ABZR87_RS21230at 1146.417 kb on - strandat 1146.539 kb on + strand, within ABZR87_RS21235at 1146.600 kb on - strand, within ABZR87_RS21235at 1146.600 kb on - strand, within ABZR87_RS21235at 1146.606 kb on - strand, within ABZR87_RS21235at 1146.606 kb on - strand, within ABZR87_RS21235at 1146.608 kb on + strand, within ABZR87_RS21235at 1146.609 kb on - strand, within ABZR87_RS21235at 1146.651 kb on - strand, within ABZR87_RS21235at 1146.745 kb on + strand, within ABZR87_RS21235at 1146.809 kb on + strand, within ABZR87_RS21235at 1146.999 kb on - strand, within ABZR87_RS21235at 1147.107 kb on + strandat 1147.267 kb on - strand, within ABZR87_RS21240

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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1,144,808 - ABZR87_RS21225 0.34 -0.3
1,145,296 - ABZR87_RS21225 0.85 -1.1
1,145,474 + -0.7
1,145,474 + +0.1
1,145,840 + ABZR87_RS21230 0.36 -3.0
1,145,840 + ABZR87_RS21230 0.36 +1.8
1,145,841 - ABZR87_RS21230 0.36 -0.3
1,145,841 - ABZR87_RS21230 0.36 -3.1
1,145,841 - ABZR87_RS21230 0.36 -3.7
1,145,955 + ABZR87_RS21230 0.50 +2.1
1,146,022 + ABZR87_RS21230 0.58 +2.2
1,146,023 - ABZR87_RS21230 0.58 +0.6
1,146,023 - ABZR87_RS21230 0.58 -1.6
1,146,417 - +0.1
1,146,539 + ABZR87_RS21235 0.14 -0.5
1,146,600 - ABZR87_RS21235 0.23 +0.8
1,146,600 - ABZR87_RS21235 0.23 -0.9
1,146,606 - ABZR87_RS21235 0.24 -3.5
1,146,606 - ABZR87_RS21235 0.24 -0.3
1,146,608 + ABZR87_RS21235 0.24 +1.5
1,146,609 - ABZR87_RS21235 0.25 +1.2
1,146,651 - ABZR87_RS21235 0.31 -0.9
1,146,745 + ABZR87_RS21235 0.46 -0.5
1,146,809 + ABZR87_RS21235 0.56 -1.8
1,146,999 - ABZR87_RS21235 0.86 -3.6
1,147,107 + +2.0
1,147,267 - ABZR87_RS21240 0.16 +2.7

Or see this region's nucleotide sequence