Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19645

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19640 and ABZR87_RS19645 are separated by 32 nucleotidesABZR87_RS19645 and ABZR87_RS19650 are separated by 47 nucleotidesABZR87_RS19650 and ABZR87_RS19655 are separated by 194 nucleotides ABZR87_RS19640: ABZR87_RS19640 - patatin-like phospholipase family protein, at 780,694 to 781,956 _RS19640 ABZR87_RS19645: ABZR87_RS19645 - 3-hydroxybutyrate dehydrogenase, at 781,989 to 782,774 _RS19645 ABZR87_RS19650: ABZR87_RS19650 - acetoacetate decarboxylase, at 782,822 to 783,565 _RS19650 ABZR87_RS19655: ABZR87_RS19655 - PLP-dependent aminotransferase family protein, at 783,760 to 785,163 _RS19655 Position (kb) 781 782 783Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 781.062 kb on + strand, within ABZR87_RS19640at 781.063 kb on - strand, within ABZR87_RS19640at 781.073 kb on + strand, within ABZR87_RS19640at 781.074 kb on - strand, within ABZR87_RS19640at 781.113 kb on + strand, within ABZR87_RS19640at 781.113 kb on + strand, within ABZR87_RS19640at 781.113 kb on + strand, within ABZR87_RS19640at 781.114 kb on - strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.193 kb on + strand, within ABZR87_RS19640at 781.194 kb on - strand, within ABZR87_RS19640at 781.194 kb on - strand, within ABZR87_RS19640at 781.194 kb on - strand, within ABZR87_RS19640at 781.194 kb on - strand, within ABZR87_RS19640at 781.232 kb on + strand, within ABZR87_RS19640at 781.233 kb on - strand, within ABZR87_RS19640at 781.233 kb on - strand, within ABZR87_RS19640at 781.235 kb on + strand, within ABZR87_RS19640at 781.235 kb on + strand, within ABZR87_RS19640at 781.235 kb on + strand, within ABZR87_RS19640at 781.236 kb on - strand, within ABZR87_RS19640at 781.448 kb on + strand, within ABZR87_RS19640at 781.448 kb on + strand, within ABZR87_RS19640at 781.449 kb on - strand, within ABZR87_RS19640at 781.449 kb on - strand, within ABZR87_RS19640at 781.451 kb on + strand, within ABZR87_RS19640at 781.452 kb on - strand, within ABZR87_RS19640at 781.452 kb on - strand, within ABZR87_RS19640at 781.452 kb on - strand, within ABZR87_RS19640at 781.452 kb on - strand, within ABZR87_RS19640at 781.452 kb on - strand, within ABZR87_RS19640at 781.713 kb on + strand, within ABZR87_RS19640at 781.713 kb on + strand, within ABZR87_RS19640at 781.714 kb on - strand, within ABZR87_RS19640at 781.714 kb on - strand, within ABZR87_RS19640at 781.714 kb on - strand, within ABZR87_RS19640at 781.796 kb on + strand, within ABZR87_RS19640at 781.797 kb on - strand, within ABZR87_RS19640at 781.872 kb on + strandat 781.873 kb on - strandat 781.873 kb on - strandat 781.939 kb on + strandat 781.940 kb on - strandat 781.940 kb on - strandat 781.956 kb on + strandat 781.956 kb on + strandat 781.956 kb on + strandat 781.957 kb on - strandat 781.957 kb on - strandat 781.957 kb on - strandat 781.957 kb on - strandat 781.957 kb on - strandat 781.957 kb on - strandat 781.957 kb on - strandat 781.984 kb on + strandat 781.984 kb on + strandat 781.985 kb on - strandat 782.114 kb on + strand, within ABZR87_RS19645at 782.243 kb on + strand, within ABZR87_RS19645at 782.243 kb on + strand, within ABZR87_RS19645at 782.256 kb on + strand, within ABZR87_RS19645at 782.305 kb on - strand, within ABZR87_RS19645at 782.305 kb on - strand, within ABZR87_RS19645at 782.308 kb on + strand, within ABZR87_RS19645at 782.308 kb on + strand, within ABZR87_RS19645at 782.309 kb on - strand, within ABZR87_RS19645at 782.309 kb on - strand, within ABZR87_RS19645at 782.356 kb on + strand, within ABZR87_RS19645at 782.356 kb on + strand, within ABZR87_RS19645at 782.356 kb on + strand, within ABZR87_RS19645at 782.356 kb on + strand, within ABZR87_RS19645at 782.357 kb on - strand, within ABZR87_RS19645at 782.357 kb on - strand, within ABZR87_RS19645at 782.357 kb on - strand, within ABZR87_RS19645at 782.357 kb on - strand, within ABZR87_RS19645at 782.357 kb on - strand, within ABZR87_RS19645at 782.357 kb on - strand, within ABZR87_RS19645at 782.470 kb on + strand, within ABZR87_RS19645at 782.471 kb on - strand, within ABZR87_RS19645at 782.471 kb on - strand, within ABZR87_RS19645at 782.781 kb on - strandat 782.823 kb on + strandat 782.835 kb on + strandat 783.000 kb on + strand, within ABZR87_RS19650at 783.000 kb on + strand, within ABZR87_RS19650at 783.000 kb on + strand, within ABZR87_RS19650at 783.000 kb on + strand, within ABZR87_RS19650at 783.000 kb on + strand, within ABZR87_RS19650at 783.000 kb on + strand, within ABZR87_RS19650at 783.000 kb on + strand, within ABZR87_RS19650at 783.000 kb on + strand, within ABZR87_RS19650at 783.001 kb on - strand, within ABZR87_RS19650at 783.001 kb on - strand, within ABZR87_RS19650at 783.001 kb on - strand, within ABZR87_RS19650at 783.123 kb on + strand, within ABZR87_RS19650at 783.123 kb on + strand, within ABZR87_RS19650at 783.123 kb on + strand, within ABZR87_RS19650at 783.124 kb on - strand, within ABZR87_RS19650at 783.124 kb on - strand, within ABZR87_RS19650at 783.124 kb on - strand, within ABZR87_RS19650at 783.273 kb on + strand, within ABZR87_RS19650at 783.274 kb on - strand, within ABZR87_RS19650at 783.274 kb on - strand, within ABZR87_RS19650at 783.274 kb on - strand, within ABZR87_RS19650at 783.288 kb on + strand, within ABZR87_RS19650at 783.288 kb on + strand, within ABZR87_RS19650at 783.288 kb on + strand, within ABZR87_RS19650at 783.289 kb on - strand, within ABZR87_RS19650at 783.289 kb on - strand, within ABZR87_RS19650at 783.289 kb on - strand, within ABZR87_RS19650at 783.309 kb on + strand, within ABZR87_RS19650at 783.309 kb on + strand, within ABZR87_RS19650at 783.310 kb on - strand, within ABZR87_RS19650at 783.310 kb on - strand, within ABZR87_RS19650at 783.310 kb on - strand, within ABZR87_RS19650at 783.310 kb on - strand, within ABZR87_RS19650at 783.310 kb on - strand, within ABZR87_RS19650at 783.310 kb on - strand, within ABZR87_RS19650at 783.342 kb on + strand, within ABZR87_RS19650at 783.342 kb on + strand, within ABZR87_RS19650at 783.342 kb on + strand, within ABZR87_RS19650at 783.343 kb on - strand, within ABZR87_RS19650at 783.343 kb on - strand, within ABZR87_RS19650at 783.629 kb on + strandat 783.728 kb on + strandat 783.728 kb on + strandat 783.729 kb on - strandat 783.729 kb on - strandat 783.729 kb on - strandat 783.729 kb on - strandat 783.729 kb on - strandat 783.729 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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781,062 + ABZR87_RS19640 0.29 +1.9
781,063 - ABZR87_RS19640 0.29 +2.9
781,073 + ABZR87_RS19640 0.30 -1.6
781,074 - ABZR87_RS19640 0.30 +0.2
781,113 + ABZR87_RS19640 0.33 +1.0
781,113 + ABZR87_RS19640 0.33 +0.1
781,113 + ABZR87_RS19640 0.33 -1.4
781,114 - ABZR87_RS19640 0.33 +1.9
781,193 + ABZR87_RS19640 0.40 +2.0
781,193 + ABZR87_RS19640 0.40 -2.6
781,193 + ABZR87_RS19640 0.40 -0.4
781,193 + ABZR87_RS19640 0.40 -1.1
781,193 + ABZR87_RS19640 0.40 +0.8
781,193 + ABZR87_RS19640 0.40 +0.8
781,193 + ABZR87_RS19640 0.40 +0.2
781,193 + ABZR87_RS19640 0.40 -2.9
781,194 - ABZR87_RS19640 0.40 -2.7
781,194 - ABZR87_RS19640 0.40 -0.2
781,194 - ABZR87_RS19640 0.40 +2.6
781,194 - ABZR87_RS19640 0.40 -0.6
781,232 + ABZR87_RS19640 0.43 -0.9
781,233 - ABZR87_RS19640 0.43 -1.8
781,233 - ABZR87_RS19640 0.43 +1.3
781,235 + ABZR87_RS19640 0.43 +0.4
781,235 + ABZR87_RS19640 0.43 -0.4
781,235 + ABZR87_RS19640 0.43 +1.6
781,236 - ABZR87_RS19640 0.43 +0.1
781,448 + ABZR87_RS19640 0.60 -0.8
781,448 + ABZR87_RS19640 0.60 -1.5
781,449 - ABZR87_RS19640 0.60 +0.1
781,449 - ABZR87_RS19640 0.60 -0.4
781,451 + ABZR87_RS19640 0.60 -1.1
781,452 - ABZR87_RS19640 0.60 -0.7
781,452 - ABZR87_RS19640 0.60 +1.3
781,452 - ABZR87_RS19640 0.60 +1.1
781,452 - ABZR87_RS19640 0.60 +0.4
781,452 - ABZR87_RS19640 0.60 -0.1
781,713 + ABZR87_RS19640 0.81 +0.3
781,713 + ABZR87_RS19640 0.81 +2.0
781,714 - ABZR87_RS19640 0.81 +1.4
781,714 - ABZR87_RS19640 0.81 -0.8
781,714 - ABZR87_RS19640 0.81 +0.1
781,796 + ABZR87_RS19640 0.87 -1.3
781,797 - ABZR87_RS19640 0.87 +0.0
781,872 + -1.3
781,873 - +0.8
781,873 - -2.8
781,939 + +1.5
781,940 - +1.0
781,940 - +1.3
781,956 + -0.3
781,956 + -1.4
781,956 + +1.1
781,957 - -0.5
781,957 - -2.6
781,957 - +0.7
781,957 - +1.2
781,957 - +0.7
781,957 - +0.5
781,957 - -2.1
781,984 + +1.6
781,984 + +1.1
781,985 - +0.3
782,114 + ABZR87_RS19645 0.16 -0.6
782,243 + ABZR87_RS19645 0.32 -0.6
782,243 + ABZR87_RS19645 0.32 -2.6
782,256 + ABZR87_RS19645 0.34 +1.2
782,305 - ABZR87_RS19645 0.40 +1.0
782,305 - ABZR87_RS19645 0.40 -3.7
782,308 + ABZR87_RS19645 0.41 +0.5
782,308 + ABZR87_RS19645 0.41 +1.5
782,309 - ABZR87_RS19645 0.41 -0.2
782,309 - ABZR87_RS19645 0.41 -2.0
782,356 + ABZR87_RS19645 0.47 +0.6
782,356 + ABZR87_RS19645 0.47 -1.4
782,356 + ABZR87_RS19645 0.47 +1.8
782,356 + ABZR87_RS19645 0.47 +0.7
782,357 - ABZR87_RS19645 0.47 -2.8
782,357 - ABZR87_RS19645 0.47 -2.9
782,357 - ABZR87_RS19645 0.47 +0.6
782,357 - ABZR87_RS19645 0.47 -1.7
782,357 - ABZR87_RS19645 0.47 +0.6
782,357 - ABZR87_RS19645 0.47 -0.1
782,470 + ABZR87_RS19645 0.61 +1.8
782,471 - ABZR87_RS19645 0.61 +1.9
782,471 - ABZR87_RS19645 0.61 -2.3
782,781 - +0.1
782,823 + -1.2
782,835 + -0.8
783,000 + ABZR87_RS19650 0.24 -1.6
783,000 + ABZR87_RS19650 0.24 -2.5
783,000 + ABZR87_RS19650 0.24 -0.4
783,000 + ABZR87_RS19650 0.24 +1.1
783,000 + ABZR87_RS19650 0.24 -1.4
783,000 + ABZR87_RS19650 0.24 +1.9
783,000 + ABZR87_RS19650 0.24 -1.2
783,000 + ABZR87_RS19650 0.24 -2.9
783,001 - ABZR87_RS19650 0.24 -0.3
783,001 - ABZR87_RS19650 0.24 +1.9
783,001 - ABZR87_RS19650 0.24 -1.5
783,123 + ABZR87_RS19650 0.40 +1.2
783,123 + ABZR87_RS19650 0.40 -1.1
783,123 + ABZR87_RS19650 0.40 +0.1
783,124 - ABZR87_RS19650 0.41 +1.2
783,124 - ABZR87_RS19650 0.41 -3.1
783,124 - ABZR87_RS19650 0.41 +0.8
783,273 + ABZR87_RS19650 0.61 +1.2
783,274 - ABZR87_RS19650 0.61 +2.4
783,274 - ABZR87_RS19650 0.61 -0.2
783,274 - ABZR87_RS19650 0.61 -2.5
783,288 + ABZR87_RS19650 0.63 -0.4
783,288 + ABZR87_RS19650 0.63 +1.5
783,288 + ABZR87_RS19650 0.63 +0.5
783,289 - ABZR87_RS19650 0.63 +1.7
783,289 - ABZR87_RS19650 0.63 -2.9
783,289 - ABZR87_RS19650 0.63 -0.4
783,309 + ABZR87_RS19650 0.65 +0.2
783,309 + ABZR87_RS19650 0.65 +0.5
783,310 - ABZR87_RS19650 0.66 +1.7
783,310 - ABZR87_RS19650 0.66 -1.9
783,310 - ABZR87_RS19650 0.66 -3.5
783,310 - ABZR87_RS19650 0.66 +0.6
783,310 - ABZR87_RS19650 0.66 -2.6
783,310 - ABZR87_RS19650 0.66 -0.0
783,342 + ABZR87_RS19650 0.70 +1.4
783,342 + ABZR87_RS19650 0.70 +1.6
783,342 + ABZR87_RS19650 0.70 +0.7
783,343 - ABZR87_RS19650 0.70 -0.1
783,343 - ABZR87_RS19650 0.70 +0.3
783,629 + +0.6
783,728 + +1.5
783,728 + +2.3
783,729 - +1.1
783,729 - -0.9
783,729 - -3.5
783,729 - -2.3
783,729 - +0.3
783,729 - -2.0

Or see this region's nucleotide sequence