Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19470

Experiment: 4-Hydroxybenzoic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS19465 and ABZR87_RS19470 are separated by 168 nucleotidesABZR87_RS19470 and ABZR87_RS19475 are separated by 38 nucleotides ABZR87_RS19465: ABZR87_RS19465 - tyrosine-type recombinase/integrase, at 736,576 to 737,556 _RS19465 ABZR87_RS19470: ABZR87_RS19470 - UDP-glucose 4-epimerase GalE, at 737,725 to 738,750 _RS19470 ABZR87_RS19475: ABZR87_RS19475 - PAS domain-containing protein, at 738,789 to 740,216 _RS19475 Position (kb) 737 738 739Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 736.843 kb on + strand, within ABZR87_RS19465at 736.843 kb on + strand, within ABZR87_RS19465at 736.844 kb on - strand, within ABZR87_RS19465at 737.192 kb on - strand, within ABZR87_RS19465at 737.192 kb on - strand, within ABZR87_RS19465at 737.326 kb on + strand, within ABZR87_RS19465at 737.413 kb on + strand, within ABZR87_RS19465at 737.462 kb on - strandat 737.512 kb on + strandat 737.512 kb on + strandat 737.513 kb on - strandat 737.513 kb on - strandat 737.554 kb on + strandat 737.554 kb on + strandat 737.554 kb on + strandat 737.554 kb on + strandat 737.555 kb on - strandat 737.555 kb on - strandat 737.555 kb on - strandat 737.615 kb on + strandat 737.616 kb on - strandat 737.616 kb on - strandat 737.631 kb on + strandat 737.632 kb on - strandat 737.660 kb on + strandat 737.660 kb on + strandat 737.660 kb on + strandat 737.660 kb on + strandat 737.660 kb on + strandat 737.660 kb on + strandat 737.661 kb on - strandat 737.693 kb on + strandat 737.693 kb on + strandat 737.694 kb on - strandat 737.694 kb on - strandat 737.694 kb on - strandat 737.694 kb on - strandat 737.694 kb on - strandat 737.694 kb on - strandat 737.694 kb on - strandat 737.906 kb on + strand, within ABZR87_RS19470at 737.906 kb on + strand, within ABZR87_RS19470at 737.906 kb on + strand, within ABZR87_RS19470at 737.906 kb on + strand, within ABZR87_RS19470at 737.906 kb on + strand, within ABZR87_RS19470at 737.906 kb on + strand, within ABZR87_RS19470at 738.016 kb on + strand, within ABZR87_RS19470at 738.016 kb on + strand, within ABZR87_RS19470at 738.016 kb on + strand, within ABZR87_RS19470at 738.019 kb on + strand, within ABZR87_RS19470at 738.020 kb on - strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.112 kb on + strand, within ABZR87_RS19470at 738.113 kb on - strand, within ABZR87_RS19470at 738.113 kb on - strand, within ABZR87_RS19470at 738.113 kb on - strand, within ABZR87_RS19470at 738.113 kb on - strand, within ABZR87_RS19470at 738.113 kb on - strand, within ABZR87_RS19470at 738.127 kb on - strand, within ABZR87_RS19470at 738.247 kb on + strand, within ABZR87_RS19470at 738.247 kb on + strand, within ABZR87_RS19470at 738.248 kb on - strand, within ABZR87_RS19470at 738.256 kb on + strand, within ABZR87_RS19470at 738.256 kb on + strand, within ABZR87_RS19470at 738.257 kb on - strand, within ABZR87_RS19470at 738.257 kb on - strand, within ABZR87_RS19470at 738.257 kb on - strand, within ABZR87_RS19470at 738.334 kb on + strand, within ABZR87_RS19470at 738.334 kb on + strand, within ABZR87_RS19470at 738.334 kb on + strand, within ABZR87_RS19470at 738.334 kb on + strand, within ABZR87_RS19470at 738.335 kb on + strand, within ABZR87_RS19470at 738.335 kb on - strand, within ABZR87_RS19470at 738.335 kb on - strand, within ABZR87_RS19470at 738.335 kb on - strand, within ABZR87_RS19470at 738.335 kb on - strand, within ABZR87_RS19470at 738.424 kb on + strand, within ABZR87_RS19470at 738.424 kb on + strand, within ABZR87_RS19470at 738.424 kb on + strand, within ABZR87_RS19470at 738.424 kb on + strand, within ABZR87_RS19470at 738.425 kb on - strand, within ABZR87_RS19470at 738.425 kb on - strand, within ABZR87_RS19470at 738.425 kb on - strand, within ABZR87_RS19470at 738.425 kb on - strand, within ABZR87_RS19470at 738.553 kb on + strand, within ABZR87_RS19470at 738.583 kb on + strand, within ABZR87_RS19470at 738.625 kb on + strand, within ABZR87_RS19470at 738.625 kb on + strand, within ABZR87_RS19470at 738.626 kb on - strand, within ABZR87_RS19470at 738.626 kb on - strand, within ABZR87_RS19470at 738.626 kb on - strand, within ABZR87_RS19470at 738.626 kb on - strand, within ABZR87_RS19470at 738.821 kb on + strandat 738.821 kb on + strandat 738.821 kb on + strandat 738.821 kb on + strandat 738.821 kb on + strandat 738.822 kb on - strandat 739.144 kb on + strand, within ABZR87_RS19475at 739.192 kb on + strand, within ABZR87_RS19475at 739.193 kb on - strand, within ABZR87_RS19475at 739.238 kb on + strand, within ABZR87_RS19475at 739.239 kb on - strand, within ABZR87_RS19475at 739.392 kb on + strand, within ABZR87_RS19475at 739.393 kb on - strand, within ABZR87_RS19475at 739.518 kb on + strand, within ABZR87_RS19475at 739.620 kb on + strand, within ABZR87_RS19475at 739.620 kb on + strand, within ABZR87_RS19475at 739.620 kb on + strand, within ABZR87_RS19475

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
remove
736,843 + ABZR87_RS19465 0.27 +0.5
736,843 + ABZR87_RS19465 0.27 +0.3
736,844 - ABZR87_RS19465 0.27 +0.7
737,192 - ABZR87_RS19465 0.63 +1.6
737,192 - ABZR87_RS19465 0.63 +0.6
737,326 + ABZR87_RS19465 0.76 -2.4
737,413 + ABZR87_RS19465 0.85 -1.4
737,462 - -1.2
737,512 + -1.6
737,512 + +1.7
737,513 - -0.4
737,513 - -1.8
737,554 + +2.2
737,554 + +0.3
737,554 + +0.3
737,554 + +1.1
737,555 - -2.6
737,555 - +0.3
737,555 - -0.3
737,615 + +0.1
737,616 - +1.1
737,616 - -1.4
737,631 + +0.5
737,632 - -1.4
737,660 + +0.3
737,660 + -1.7
737,660 + -0.9
737,660 + -0.6
737,660 + +0.6
737,660 + +1.4
737,661 - -2.7
737,693 + +0.6
737,693 + +3.3
737,694 - -0.2
737,694 - +0.1
737,694 - -1.4
737,694 - -0.2
737,694 - -3.1
737,694 - -0.8
737,694 - -1.4
737,906 + ABZR87_RS19470 0.18 -0.8
737,906 + ABZR87_RS19470 0.18 -4.1
737,906 + ABZR87_RS19470 0.18 -1.2
737,906 + ABZR87_RS19470 0.18 -2.9
737,906 + ABZR87_RS19470 0.18 -4.6
737,906 + ABZR87_RS19470 0.18 -3.5
738,016 + ABZR87_RS19470 0.28 -3.4
738,016 + ABZR87_RS19470 0.28 -0.7
738,016 + ABZR87_RS19470 0.28 -3.8
738,019 + ABZR87_RS19470 0.29 -3.4
738,020 - ABZR87_RS19470 0.29 -2.0
738,112 + ABZR87_RS19470 0.38 -2.2
738,112 + ABZR87_RS19470 0.38 -3.9
738,112 + ABZR87_RS19470 0.38 -2.9
738,112 + ABZR87_RS19470 0.38 -0.5
738,112 + ABZR87_RS19470 0.38 -4.3
738,112 + ABZR87_RS19470 0.38 -2.6
738,113 - ABZR87_RS19470 0.38 -2.8
738,113 - ABZR87_RS19470 0.38 +0.8
738,113 - ABZR87_RS19470 0.38 -3.4
738,113 - ABZR87_RS19470 0.38 -2.8
738,113 - ABZR87_RS19470 0.38 +0.1
738,127 - ABZR87_RS19470 0.39 -0.4
738,247 + ABZR87_RS19470 0.51 -2.5
738,247 + ABZR87_RS19470 0.51 -2.3
738,248 - ABZR87_RS19470 0.51 -5.8
738,256 + ABZR87_RS19470 0.52 -3.7
738,256 + ABZR87_RS19470 0.52 -3.2
738,257 - ABZR87_RS19470 0.52 -1.9
738,257 - ABZR87_RS19470 0.52 -0.9
738,257 - ABZR87_RS19470 0.52 -2.6
738,334 + ABZR87_RS19470 0.59 -3.0
738,334 + ABZR87_RS19470 0.59 -1.8
738,334 + ABZR87_RS19470 0.59 -1.9
738,334 + ABZR87_RS19470 0.59 -2.7
738,335 + ABZR87_RS19470 0.59 -3.9
738,335 - ABZR87_RS19470 0.59 -2.8
738,335 - ABZR87_RS19470 0.59 -2.0
738,335 - ABZR87_RS19470 0.59 -1.6
738,335 - ABZR87_RS19470 0.59 -1.4
738,424 + ABZR87_RS19470 0.68 -2.9
738,424 + ABZR87_RS19470 0.68 -2.6
738,424 + ABZR87_RS19470 0.68 -4.1
738,424 + ABZR87_RS19470 0.68 -2.3
738,425 - ABZR87_RS19470 0.68 -3.1
738,425 - ABZR87_RS19470 0.68 -1.4
738,425 - ABZR87_RS19470 0.68 -2.0
738,425 - ABZR87_RS19470 0.68 -1.9
738,553 + ABZR87_RS19470 0.81 -2.4
738,583 + ABZR87_RS19470 0.84 -0.8
738,625 + ABZR87_RS19470 0.88 -1.4
738,625 + ABZR87_RS19470 0.88 -2.5
738,626 - ABZR87_RS19470 0.88 -2.8
738,626 - ABZR87_RS19470 0.88 -3.4
738,626 - ABZR87_RS19470 0.88 -3.3
738,626 - ABZR87_RS19470 0.88 -2.1
738,821 + -2.5
738,821 + +1.2
738,821 + +1.1
738,821 + -0.5
738,821 + +3.1
738,822 - +0.4
739,144 + ABZR87_RS19475 0.25 +0.5
739,192 + ABZR87_RS19475 0.28 +0.4
739,193 - ABZR87_RS19475 0.28 +0.3
739,238 + ABZR87_RS19475 0.31 +1.5
739,239 - ABZR87_RS19475 0.32 +0.9
739,392 + ABZR87_RS19475 0.42 +0.2
739,393 - ABZR87_RS19475 0.42 -0.3
739,518 + ABZR87_RS19475 0.51 +3.0
739,620 + ABZR87_RS19475 0.58 -0.2
739,620 + ABZR87_RS19475 0.58 +0.6
739,620 + ABZR87_RS19475 0.58 +0.0

Or see this region's nucleotide sequence