Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18970 and ABZR87_RS18975 are separated by 73 nucleotides ABZR87_RS18975 and ABZR87_RS18980 are separated by 291 nucleotides
ABZR87_RS18970: ABZR87_RS18970 - phospholipase D family protein, at 613,010 to 614,743
_RS18970
ABZR87_RS18975: ABZR87_RS18975 - entericidin A/B family lipoprotein, at 614,817 to 614,957
_RS18975
ABZR87_RS18980: ABZR87_RS18980 - methyl-accepting chemotaxis protein, at 615,249 to 616,817
_RS18980
Position (kb) 614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 613.846 kb on + strand, within ABZR87_RS18970 at 613.846 kb on + strand, within ABZR87_RS18970 at 613.847 kb on - strand, within ABZR87_RS18970 at 614.192 kb on + strand, within ABZR87_RS18970 at 614.192 kb on + strand, within ABZR87_RS18970 at 614.193 kb on - strand, within ABZR87_RS18970 at 614.200 kb on - strand, within ABZR87_RS18970 at 614.321 kb on + strand, within ABZR87_RS18970 at 614.509 kb on + strand, within ABZR87_RS18970 at 614.594 kb on + strand at 614.605 kb on + strand at 614.605 kb on + strand at 614.605 kb on + strand at 614.605 kb on + strand at 614.606 kb on - strand at 614.741 kb on + strand at 614.742 kb on - strand at 614.818 kb on + strand at 614.818 kb on + strand at 614.818 kb on + strand at 614.818 kb on + strand at 614.818 kb on + strand at 614.818 kb on + strand at 614.818 kb on + strand at 614.819 kb on - strand at 614.819 kb on - strand at 614.819 kb on - strand at 614.819 kb on - strand at 614.819 kb on - strand at 614.819 kb on - strand at 614.819 kb on - strand at 614.903 kb on + strand, within ABZR87_RS18975 at 614.903 kb on + strand, within ABZR87_RS18975 at 614.903 kb on + strand, within ABZR87_RS18975 at 614.903 kb on + strand, within ABZR87_RS18975 at 615.027 kb on - strand at 615.038 kb on + strand at 615.038 kb on + strand at 615.039 kb on - strand at 615.082 kb on + strand at 615.083 kb on - strand at 615.094 kb on + strand at 615.095 kb on - strand at 615.136 kb on + strand at 615.136 kb on + strand at 615.136 kb on + strand at 615.137 kb on - strand at 615.158 kb on + strand at 615.304 kb on + strand at 615.304 kb on + strand at 615.384 kb on + strand at 615.384 kb on + strand at 615.385 kb on - strand at 615.684 kb on + strand, within ABZR87_RS18980 at 615.685 kb on - strand, within ABZR87_RS18980 at 615.685 kb on - strand, within ABZR87_RS18980 at 615.685 kb on - strand, within ABZR87_RS18980 at 615.685 kb on - strand, within ABZR87_RS18980 at 615.685 kb on - strand, within ABZR87_RS18980 at 615.730 kb on - strand, within ABZR87_RS18980 at 615.771 kb on + strand, within ABZR87_RS18980 at 615.771 kb on + strand, within ABZR87_RS18980 at 615.772 kb on - strand, within ABZR87_RS18980 at 615.772 kb on - strand, within ABZR87_RS18980 at 615.772 kb on - strand, within ABZR87_RS18980 at 615.807 kb on + strand, within ABZR87_RS18980 at 615.897 kb on + strand, within ABZR87_RS18980
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 613,846 + ABZR87_RS18970 0.48 +1.2 613,846 + ABZR87_RS18970 0.48 -1.2 613,847 - ABZR87_RS18970 0.48 -2.2 614,192 + ABZR87_RS18970 0.68 +3.1 614,192 + ABZR87_RS18970 0.68 -0.4 614,193 - ABZR87_RS18970 0.68 -0.7 614,200 - ABZR87_RS18970 0.69 -0.7 614,321 + ABZR87_RS18970 0.76 -2.9 614,509 + ABZR87_RS18970 0.86 +1.4 614,594 + -0.0 614,605 + -1.0 614,605 + -0.4 614,605 + -3.6 614,605 + -1.9 614,606 - +0.5 614,741 + +0.8 614,742 - +2.6 614,818 + -0.1 614,818 + -1.7 614,818 + +0.0 614,818 + -2.3 614,818 + +0.1 614,818 + -1.0 614,818 + +1.3 614,819 - +1.9 614,819 - -0.1 614,819 - +1.0 614,819 - +0.9 614,819 - +1.2 614,819 - -2.0 614,819 - -0.9 614,903 + ABZR87_RS18975 0.61 -0.3 614,903 + ABZR87_RS18975 0.61 -0.6 614,903 + ABZR87_RS18975 0.61 -2.9 614,903 + ABZR87_RS18975 0.61 -2.9 615,027 - +0.6 615,038 + +1.7 615,038 + +1.4 615,039 - +0.3 615,082 + -2.6 615,083 - +0.7 615,094 + -0.4 615,095 - -3.5 615,136 + +1.6 615,136 + +2.3 615,136 + +2.1 615,137 - -2.5 615,158 + +1.0 615,304 + +2.0 615,304 + -0.6 615,384 + +1.1 615,384 + -0.6 615,385 - +1.1 615,684 + ABZR87_RS18980 0.28 +0.8 615,685 - ABZR87_RS18980 0.28 -1.1 615,685 - ABZR87_RS18980 0.28 -2.3 615,685 - ABZR87_RS18980 0.28 -0.7 615,685 - ABZR87_RS18980 0.28 +1.6 615,685 - ABZR87_RS18980 0.28 -1.6 615,730 - ABZR87_RS18980 0.31 -0.2 615,771 + ABZR87_RS18980 0.33 -1.4 615,771 + ABZR87_RS18980 0.33 -3.0 615,772 - ABZR87_RS18980 0.33 +1.1 615,772 - ABZR87_RS18980 0.33 +0.4 615,772 - ABZR87_RS18980 0.33 -0.0 615,807 + ABZR87_RS18980 0.36 +0.9 615,897 + ABZR87_RS18980 0.41 +0.8
Or see this region's nucleotide sequence