Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18600

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18595 and ABZR87_RS18600 are separated by 177 nucleotidesABZR87_RS18600 and ABZR87_RS18605 are separated by 49 nucleotides ABZR87_RS18595: ABZR87_RS18595 - polyamine aminopropyltransferase, at 525,296 to 526,873 _RS18595 ABZR87_RS18600: ABZR87_RS18600 - DUF350 domain-containing protein, at 527,051 to 527,449 _RS18600 ABZR87_RS18605: ABZR87_RS18605 - SPFH domain-containing protein, at 527,499 to 528,542 _RS18605 Position (kb) 527 528Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 526.056 kb on + strand, within ABZR87_RS18595at 526.057 kb on - strand, within ABZR87_RS18595at 526.101 kb on + strand, within ABZR87_RS18595at 526.102 kb on - strand, within ABZR87_RS18595at 526.240 kb on + strand, within ABZR87_RS18595at 526.240 kb on + strand, within ABZR87_RS18595at 526.241 kb on - strand, within ABZR87_RS18595at 526.241 kb on - strand, within ABZR87_RS18595at 526.241 kb on - strand, within ABZR87_RS18595at 526.241 kb on - strand, within ABZR87_RS18595at 526.241 kb on - strand, within ABZR87_RS18595at 526.241 kb on - strand, within ABZR87_RS18595at 526.257 kb on - strand, within ABZR87_RS18595at 526.300 kb on + strand, within ABZR87_RS18595at 526.395 kb on + strand, within ABZR87_RS18595at 526.396 kb on - strand, within ABZR87_RS18595at 526.516 kb on - strand, within ABZR87_RS18595at 526.553 kb on + strand, within ABZR87_RS18595at 526.553 kb on + strand, within ABZR87_RS18595at 526.554 kb on - strand, within ABZR87_RS18595at 526.648 kb on - strand, within ABZR87_RS18595at 526.648 kb on - strand, within ABZR87_RS18595at 526.687 kb on - strand, within ABZR87_RS18595at 526.687 kb on - strand, within ABZR87_RS18595at 526.734 kb on + strandat 526.764 kb on + strandat 526.764 kb on + strandat 526.765 kb on - strandat 526.765 kb on - strandat 526.845 kb on + strandat 526.845 kb on + strandat 526.845 kb on + strandat 526.845 kb on + strandat 526.845 kb on + strandat 526.845 kb on + strandat 526.846 kb on - strandat 526.846 kb on - strandat 526.846 kb on - strandat 526.846 kb on - strandat 526.846 kb on - strandat 526.846 kb on - strandat 526.846 kb on - strandat 526.846 kb on - strandat 526.846 kb on - strandat 527.013 kb on + strandat 527.015 kb on + strandat 527.015 kb on + strandat 527.016 kb on - strandat 527.028 kb on + strandat 527.028 kb on + strandat 527.028 kb on + strandat 527.028 kb on + strandat 527.028 kb on + strandat 527.028 kb on + strandat 527.028 kb on + strandat 527.028 kb on + strandat 527.028 kb on + strandat 527.028 kb on + strandat 527.028 kb on + strandat 527.028 kb on + strandat 527.028 kb on + strandat 527.029 kb on - strandat 527.029 kb on - strandat 527.029 kb on - strandat 527.029 kb on - strandat 527.029 kb on - strandat 527.029 kb on - strandat 527.029 kb on - strandat 527.029 kb on - strandat 527.029 kb on - strandat 527.032 kb on + strandat 527.033 kb on - strandat 527.033 kb on - strandat 527.081 kb on + strandat 527.135 kb on + strand, within ABZR87_RS18600at 527.136 kb on - strand, within ABZR87_RS18600at 527.136 kb on - strand, within ABZR87_RS18600at 527.186 kb on - strand, within ABZR87_RS18600at 527.332 kb on + strand, within ABZR87_RS18600at 527.332 kb on + strand, within ABZR87_RS18600at 527.332 kb on + strand, within ABZR87_RS18600at 527.333 kb on - strand, within ABZR87_RS18600at 527.351 kb on + strand, within ABZR87_RS18600at 527.377 kb on + strand, within ABZR87_RS18600at 527.378 kb on - strand, within ABZR87_RS18600at 527.389 kb on + strand, within ABZR87_RS18600at 527.390 kb on - strand, within ABZR87_RS18600at 527.680 kb on + strand, within ABZR87_RS18605at 527.680 kb on + strand, within ABZR87_RS18605at 527.681 kb on - strand, within ABZR87_RS18605at 527.733 kb on + strand, within ABZR87_RS18605at 527.733 kb on + strand, within ABZR87_RS18605at 527.734 kb on - strand, within ABZR87_RS18605at 527.784 kb on + strand, within ABZR87_RS18605at 527.785 kb on - strand, within ABZR87_RS18605at 527.785 kb on - strand, within ABZR87_RS18605at 527.787 kb on + strand, within ABZR87_RS18605at 527.788 kb on - strand, within ABZR87_RS18605at 527.892 kb on + strand, within ABZR87_RS18605at 527.892 kb on + strand, within ABZR87_RS18605at 527.898 kb on + strand, within ABZR87_RS18605at 527.898 kb on + strand, within ABZR87_RS18605at 527.925 kb on + strand, within ABZR87_RS18605at 527.926 kb on - strand, within ABZR87_RS18605at 527.955 kb on + strand, within ABZR87_RS18605at 527.955 kb on + strand, within ABZR87_RS18605at 527.955 kb on + strand, within ABZR87_RS18605at 527.956 kb on - strand, within ABZR87_RS18605at 527.956 kb on - strand, within ABZR87_RS18605at 527.956 kb on - strand, within ABZR87_RS18605at 527.956 kb on - strand, within ABZR87_RS18605at 527.956 kb on - strand, within ABZR87_RS18605

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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526,056 + ABZR87_RS18595 0.48 -2.4
526,057 - ABZR87_RS18595 0.48 -0.8
526,101 + ABZR87_RS18595 0.51 -1.0
526,102 - ABZR87_RS18595 0.51 -0.7
526,240 + ABZR87_RS18595 0.60 -0.6
526,240 + ABZR87_RS18595 0.60 -2.5
526,241 - ABZR87_RS18595 0.60 +0.3
526,241 - ABZR87_RS18595 0.60 -0.4
526,241 - ABZR87_RS18595 0.60 +1.3
526,241 - ABZR87_RS18595 0.60 -0.0
526,241 - ABZR87_RS18595 0.60 -0.4
526,241 - ABZR87_RS18595 0.60 -1.7
526,257 - ABZR87_RS18595 0.61 -0.3
526,300 + ABZR87_RS18595 0.64 +1.0
526,395 + ABZR87_RS18595 0.70 +0.7
526,396 - ABZR87_RS18595 0.70 -1.7
526,516 - ABZR87_RS18595 0.77 -0.1
526,553 + ABZR87_RS18595 0.80 +2.6
526,553 + ABZR87_RS18595 0.80 +0.0
526,554 - ABZR87_RS18595 0.80 -1.2
526,648 - ABZR87_RS18595 0.86 -0.4
526,648 - ABZR87_RS18595 0.86 +0.5
526,687 - ABZR87_RS18595 0.88 +2.3
526,687 - ABZR87_RS18595 0.88 +1.1
526,734 + -0.1
526,764 + -2.0
526,764 + +0.7
526,765 - -0.8
526,765 - -1.4
526,845 + +0.3
526,845 + +0.4
526,845 + +2.1
526,845 + +1.4
526,845 + -1.1
526,845 + +2.0
526,846 - -1.2
526,846 - +1.9
526,846 - -1.6
526,846 - +0.6
526,846 - -1.9
526,846 - -2.0
526,846 - -1.4
526,846 - -3.2
526,846 - -4.0
527,013 + -1.2
527,015 + +1.1
527,015 + -1.6
527,016 - -1.0
527,028 + +1.0
527,028 + -0.2
527,028 + -0.1
527,028 + -0.1
527,028 + -0.3
527,028 + -1.3
527,028 + -1.5
527,028 + -0.3
527,028 + -1.5
527,028 + -1.8
527,028 + -2.2
527,028 + +0.4
527,028 + -1.5
527,029 - +1.2
527,029 - +0.7
527,029 - -1.9
527,029 - -0.2
527,029 - -0.9
527,029 - -1.7
527,029 - +1.1
527,029 - +1.1
527,029 - +0.8
527,032 + +2.0
527,033 - +0.3
527,033 - -0.7
527,081 + -1.2
527,135 + ABZR87_RS18600 0.21 -0.3
527,136 - ABZR87_RS18600 0.21 +0.9
527,136 - ABZR87_RS18600 0.21 +2.0
527,186 - ABZR87_RS18600 0.34 +0.7
527,332 + ABZR87_RS18600 0.70 -0.5
527,332 + ABZR87_RS18600 0.70 -1.7
527,332 + ABZR87_RS18600 0.70 -0.2
527,333 - ABZR87_RS18600 0.71 +1.1
527,351 + ABZR87_RS18600 0.75 -1.7
527,377 + ABZR87_RS18600 0.82 -2.2
527,378 - ABZR87_RS18600 0.82 +1.8
527,389 + ABZR87_RS18600 0.85 -3.1
527,390 - ABZR87_RS18600 0.85 +0.9
527,680 + ABZR87_RS18605 0.17 +0.9
527,680 + ABZR87_RS18605 0.17 -2.7
527,681 - ABZR87_RS18605 0.17 -2.0
527,733 + ABZR87_RS18605 0.22 -1.0
527,733 + ABZR87_RS18605 0.22 +2.1
527,734 - ABZR87_RS18605 0.23 +0.6
527,784 + ABZR87_RS18605 0.27 +1.3
527,785 - ABZR87_RS18605 0.27 -2.4
527,785 - ABZR87_RS18605 0.27 +1.7
527,787 + ABZR87_RS18605 0.28 +1.6
527,788 - ABZR87_RS18605 0.28 -2.6
527,892 + ABZR87_RS18605 0.38 +2.5
527,892 + ABZR87_RS18605 0.38 +0.8
527,898 + ABZR87_RS18605 0.38 +1.1
527,898 + ABZR87_RS18605 0.38 +1.4
527,925 + ABZR87_RS18605 0.41 -1.1
527,926 - ABZR87_RS18605 0.41 +0.5
527,955 + ABZR87_RS18605 0.44 +1.7
527,955 + ABZR87_RS18605 0.44 -2.1
527,955 + ABZR87_RS18605 0.44 -1.0
527,956 - ABZR87_RS18605 0.44 +0.7
527,956 - ABZR87_RS18605 0.44 +1.9
527,956 - ABZR87_RS18605 0.44 -1.5
527,956 - ABZR87_RS18605 0.44 -2.8
527,956 - ABZR87_RS18605 0.44 -0.1

Or see this region's nucleotide sequence