Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18515 and ABZR87_RS18520 are separated by 237 nucleotides ABZR87_RS18520 and ABZR87_RS18525 are separated by 43 nucleotides ABZR87_RS18525 and ABZR87_RS18530 are separated by 19 nucleotides ABZR87_RS18530 and ABZR87_RS18535 are separated by 141 nucleotides
ABZR87_RS18515: ABZR87_RS18515 - hypothetical protein, at 510,541 to 510,972
_RS18515
ABZR87_RS18520: ABZR87_RS18520 - hypothetical protein, at 511,210 to 511,704
_RS18520
ABZR87_RS18525: ABZR87_RS18525 - cupin domain-containing protein, at 511,748 to 512,152
_RS18525
ABZR87_RS18530: ABZR87_RS18530 - SDR family oxidoreductase, at 512,172 to 512,924
_RS18530
ABZR87_RS18535: ABZR87_RS18535 - PLP-dependent aminotransferase family protein, at 513,066 to 514,619
_RS18535
Position (kb) 511
512
513 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 511.057 kb on + strand at 511.057 kb on + strand at 511.057 kb on + strand at 511.062 kb on + strand at 511.062 kb on + strand at 511.062 kb on + strand at 511.063 kb on - strand at 511.063 kb on - strand at 511.063 kb on - strand at 511.072 kb on + strand at 511.073 kb on - strand at 511.235 kb on - strand at 511.235 kb on - strand at 511.511 kb on - strand, within ABZR87_RS18520 at 511.737 kb on + strand at 511.737 kb on + strand at 511.737 kb on + strand at 511.737 kb on + strand at 511.737 kb on + strand at 511.737 kb on + strand at 511.737 kb on + strand at 511.738 kb on - strand at 511.738 kb on - strand at 511.738 kb on - strand at 511.738 kb on - strand at 511.749 kb on + strand at 511.749 kb on + strand at 511.750 kb on - strand at 511.844 kb on - strand, within ABZR87_RS18525 at 511.844 kb on - strand, within ABZR87_RS18525 at 511.844 kb on - strand, within ABZR87_RS18525 at 511.873 kb on + strand, within ABZR87_RS18525 at 511.874 kb on - strand, within ABZR87_RS18525 at 511.874 kb on - strand, within ABZR87_RS18525 at 511.941 kb on + strand, within ABZR87_RS18525 at 511.941 kb on + strand, within ABZR87_RS18525 at 511.941 kb on + strand, within ABZR87_RS18525 at 511.942 kb on - strand, within ABZR87_RS18525 at 511.996 kb on - strand, within ABZR87_RS18525 at 512.044 kb on + strand, within ABZR87_RS18525 at 512.045 kb on - strand, within ABZR87_RS18525 at 512.174 kb on - strand at 512.329 kb on + strand, within ABZR87_RS18530 at 512.330 kb on - strand, within ABZR87_RS18530 at 512.475 kb on + strand, within ABZR87_RS18530 at 512.475 kb on + strand, within ABZR87_RS18530 at 512.552 kb on - strand, within ABZR87_RS18530 at 512.552 kb on - strand, within ABZR87_RS18530 at 512.552 kb on - strand, within ABZR87_RS18530 at 512.605 kb on + strand, within ABZR87_RS18530 at 512.605 kb on + strand, within ABZR87_RS18530 at 512.606 kb on - strand, within ABZR87_RS18530 at 512.850 kb on - strand at 512.907 kb on + strand at 512.955 kb on + strand at 512.956 kb on - strand at 512.956 kb on - strand at 512.956 kb on - strand at 512.956 kb on - strand at 512.965 kb on + strand at 512.966 kb on - strand at 512.966 kb on - strand at 513.074 kb on - strand at 513.074 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 511,057 + +2.8 511,057 + -2.3 511,057 + -1.6 511,062 + -0.7 511,062 + +0.6 511,062 + +1.8 511,063 - -2.8 511,063 - +0.4 511,063 - -1.3 511,072 + +1.8 511,073 - +2.3 511,235 - -2.3 511,235 - -3.2 511,511 - ABZR87_RS18520 0.61 -0.7 511,737 + -1.1 511,737 + -0.1 511,737 + -1.0 511,737 + +2.8 511,737 + +1.0 511,737 + +0.5 511,737 + +0.6 511,738 - +0.1 511,738 - -1.3 511,738 - -2.8 511,738 - +1.1 511,749 + -1.1 511,749 + -0.4 511,750 - +0.4 511,844 - ABZR87_RS18525 0.24 +0.8 511,844 - ABZR87_RS18525 0.24 -0.2 511,844 - ABZR87_RS18525 0.24 -0.1 511,873 + ABZR87_RS18525 0.31 -2.1 511,874 - ABZR87_RS18525 0.31 -2.4 511,874 - ABZR87_RS18525 0.31 -3.5 511,941 + ABZR87_RS18525 0.48 -0.2 511,941 + ABZR87_RS18525 0.48 -0.3 511,941 + ABZR87_RS18525 0.48 -0.0 511,942 - ABZR87_RS18525 0.48 +0.6 511,996 - ABZR87_RS18525 0.61 -0.0 512,044 + ABZR87_RS18525 0.73 +0.1 512,045 - ABZR87_RS18525 0.73 -1.0 512,174 - -0.8 512,329 + ABZR87_RS18530 0.21 -1.6 512,330 - ABZR87_RS18530 0.21 -1.3 512,475 + ABZR87_RS18530 0.40 +0.8 512,475 + ABZR87_RS18530 0.40 -2.1 512,552 - ABZR87_RS18530 0.50 +0.2 512,552 - ABZR87_RS18530 0.50 -1.9 512,552 - ABZR87_RS18530 0.50 -1.8 512,605 + ABZR87_RS18530 0.58 -3.3 512,605 + ABZR87_RS18530 0.58 -0.8 512,606 - ABZR87_RS18530 0.58 +1.4 512,850 - +1.9 512,907 + +3.1 512,955 + +1.1 512,956 - +0.2 512,956 - -1.8 512,956 - +1.0 512,956 - +1.1 512,965 + -0.8 512,966 - -3.1 512,966 - -3.6 513,074 - +1.0 513,074 - -0.4
Or see this region's nucleotide sequence