Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18505

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18500 and ABZR87_RS18505 are separated by 68 nucleotidesABZR87_RS18505 and ABZR87_RS18510 are separated by 15 nucleotidesABZR87_RS18510 and ABZR87_RS18515 are separated by 177 nucleotidesABZR87_RS18515 and ABZR87_RS18520 are separated by 237 nucleotides ABZR87_RS18500: ABZR87_RS18500 - AraC family transcriptional regulator, at 508,658 to 509,713 _RS18500 ABZR87_RS18505: ABZR87_RS18505 - TetR/AcrR family transcriptional regulator, at 509,782 to 510,228 _RS18505 ABZR87_RS18510: ABZR87_RS18510 - hypothetical protein, at 510,244 to 510,363 _RS18510 ABZR87_RS18515: ABZR87_RS18515 - hypothetical protein, at 510,541 to 510,972 _RS18515 ABZR87_RS18520: ABZR87_RS18520 - hypothetical protein, at 511,210 to 511,704 _RS18520 Position (kb) 509 510 511Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 508.816 kb on - strand, within ABZR87_RS18500at 508.821 kb on + strand, within ABZR87_RS18500at 508.902 kb on + strand, within ABZR87_RS18500at 508.902 kb on + strand, within ABZR87_RS18500at 508.903 kb on - strand, within ABZR87_RS18500at 508.903 kb on - strand, within ABZR87_RS18500at 508.903 kb on - strand, within ABZR87_RS18500at 508.903 kb on - strand, within ABZR87_RS18500at 508.968 kb on + strand, within ABZR87_RS18500at 508.968 kb on + strand, within ABZR87_RS18500at 508.968 kb on + strand, within ABZR87_RS18500at 508.969 kb on - strand, within ABZR87_RS18500at 509.049 kb on + strand, within ABZR87_RS18500at 509.049 kb on + strand, within ABZR87_RS18500at 509.049 kb on + strand, within ABZR87_RS18500at 509.050 kb on - strand, within ABZR87_RS18500at 509.301 kb on - strand, within ABZR87_RS18500at 509.361 kb on + strand, within ABZR87_RS18500at 509.362 kb on - strand, within ABZR87_RS18500at 509.362 kb on - strand, within ABZR87_RS18500at 509.417 kb on - strand, within ABZR87_RS18500at 509.417 kb on - strand, within ABZR87_RS18500at 509.486 kb on - strand, within ABZR87_RS18500at 509.499 kb on + strand, within ABZR87_RS18500at 509.499 kb on + strand, within ABZR87_RS18500at 509.499 kb on + strand, within ABZR87_RS18500at 509.500 kb on - strand, within ABZR87_RS18500at 509.500 kb on - strand, within ABZR87_RS18500at 509.675 kb on - strandat 509.760 kb on - strandat 509.897 kb on + strand, within ABZR87_RS18505at 509.897 kb on + strand, within ABZR87_RS18505at 509.897 kb on + strand, within ABZR87_RS18505at 509.897 kb on + strand, within ABZR87_RS18505at 509.897 kb on + strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 509.898 kb on - strand, within ABZR87_RS18505at 510.069 kb on + strand, within ABZR87_RS18505at 510.086 kb on + strand, within ABZR87_RS18505at 510.124 kb on - strand, within ABZR87_RS18505at 510.170 kb on + strand, within ABZR87_RS18505at 510.348 kb on + strand, within ABZR87_RS18510at 510.348 kb on + strand, within ABZR87_RS18510at 510.348 kb on + strand, within ABZR87_RS18510at 510.348 kb on + strand, within ABZR87_RS18510at 510.349 kb on - strand, within ABZR87_RS18510at 510.349 kb on - strand, within ABZR87_RS18510at 510.349 kb on - strand, within ABZR87_RS18510at 510.349 kb on - strand, within ABZR87_RS18510at 510.414 kb on + strandat 510.415 kb on - strandat 510.468 kb on + strandat 510.468 kb on + strandat 510.469 kb on - strandat 510.469 kb on - strandat 510.471 kb on - strandat 510.512 kb on + strandat 510.512 kb on + strandat 510.513 kb on - strandat 510.513 kb on - strandat 510.513 kb on - strandat 510.513 kb on - strandat 510.542 kb on + strandat 510.542 kb on + strandat 510.542 kb on + strandat 510.543 kb on - strandat 510.569 kb on + strandat 510.569 kb on + strandat 510.570 kb on - strandat 511.057 kb on + strandat 511.057 kb on + strandat 511.057 kb on + strandat 511.062 kb on + strandat 511.062 kb on + strandat 511.062 kb on + strandat 511.063 kb on - strandat 511.063 kb on - strandat 511.063 kb on - strandat 511.072 kb on + strandat 511.073 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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508,816 - ABZR87_RS18500 0.15 -1.1
508,821 + ABZR87_RS18500 0.15 +1.8
508,902 + ABZR87_RS18500 0.23 +1.8
508,902 + ABZR87_RS18500 0.23 +0.1
508,903 - ABZR87_RS18500 0.23 -2.0
508,903 - ABZR87_RS18500 0.23 -0.2
508,903 - ABZR87_RS18500 0.23 +0.4
508,903 - ABZR87_RS18500 0.23 +1.4
508,968 + ABZR87_RS18500 0.29 -1.2
508,968 + ABZR87_RS18500 0.29 +0.4
508,968 + ABZR87_RS18500 0.29 -1.3
508,969 - ABZR87_RS18500 0.29 +2.7
509,049 + ABZR87_RS18500 0.37 +0.7
509,049 + ABZR87_RS18500 0.37 -0.9
509,049 + ABZR87_RS18500 0.37 +0.1
509,050 - ABZR87_RS18500 0.37 -0.1
509,301 - ABZR87_RS18500 0.61 +0.8
509,361 + ABZR87_RS18500 0.67 +0.3
509,362 - ABZR87_RS18500 0.67 -0.3
509,362 - ABZR87_RS18500 0.67 -0.8
509,417 - ABZR87_RS18500 0.72 +0.4
509,417 - ABZR87_RS18500 0.72 -2.0
509,486 - ABZR87_RS18500 0.78 +0.3
509,499 + ABZR87_RS18500 0.80 -2.2
509,499 + ABZR87_RS18500 0.80 +2.4
509,499 + ABZR87_RS18500 0.80 +1.4
509,500 - ABZR87_RS18500 0.80 -1.4
509,500 - ABZR87_RS18500 0.80 -2.6
509,675 - +1.0
509,760 - -1.8
509,897 + ABZR87_RS18505 0.26 +0.2
509,897 + ABZR87_RS18505 0.26 +2.2
509,897 + ABZR87_RS18505 0.26 +0.9
509,897 + ABZR87_RS18505 0.26 -1.8
509,897 + ABZR87_RS18505 0.26 +1.9
509,898 - ABZR87_RS18505 0.26 -0.3
509,898 - ABZR87_RS18505 0.26 -0.7
509,898 - ABZR87_RS18505 0.26 +0.6
509,898 - ABZR87_RS18505 0.26 +1.2
509,898 - ABZR87_RS18505 0.26 -2.3
509,898 - ABZR87_RS18505 0.26 +2.1
509,898 - ABZR87_RS18505 0.26 -3.2
509,898 - ABZR87_RS18505 0.26 -1.9
509,898 - ABZR87_RS18505 0.26 +0.7
509,898 - ABZR87_RS18505 0.26 +1.1
509,898 - ABZR87_RS18505 0.26 -1.1
509,898 - ABZR87_RS18505 0.26 +0.8
509,898 - ABZR87_RS18505 0.26 -0.7
509,898 - ABZR87_RS18505 0.26 +1.5
510,069 + ABZR87_RS18505 0.64 -1.2
510,086 + ABZR87_RS18505 0.68 -0.2
510,124 - ABZR87_RS18505 0.77 +1.3
510,170 + ABZR87_RS18505 0.87 -0.0
510,348 + ABZR87_RS18510 0.87 +0.8
510,348 + ABZR87_RS18510 0.87 -0.8
510,348 + ABZR87_RS18510 0.87 -1.6
510,348 + ABZR87_RS18510 0.87 +0.1
510,349 - ABZR87_RS18510 0.88 +1.9
510,349 - ABZR87_RS18510 0.88 -3.2
510,349 - ABZR87_RS18510 0.88 -0.4
510,349 - ABZR87_RS18510 0.88 -1.4
510,414 + +2.7
510,415 - -0.7
510,468 + +1.0
510,468 + -0.6
510,469 - -0.5
510,469 - -1.3
510,471 - +0.9
510,512 + -2.9
510,512 + -2.3
510,513 - -1.6
510,513 - +1.6
510,513 - +1.8
510,513 - -0.9
510,542 + +1.0
510,542 + +2.0
510,542 + +1.0
510,543 - -0.1
510,569 + +0.6
510,569 + -1.3
510,570 - +2.0
511,057 + +2.8
511,057 + -2.3
511,057 + -1.6
511,062 + -0.7
511,062 + +0.6
511,062 + +1.8
511,063 - -2.8
511,063 - +0.4
511,063 - -1.3
511,072 + +1.8
511,073 - +2.3

Or see this region's nucleotide sequence