Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18280

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18275 and ABZR87_RS18280 are separated by 51 nucleotidesABZR87_RS18280 and ABZR87_RS18285 are separated by 134 nucleotides ABZR87_RS18275: ABZR87_RS18275 - MBL fold metallo-hydrolase, at 470,325 to 471,149 _RS18275 ABZR87_RS18280: ABZR87_RS18280 - cysteine hydrolase family protein, at 471,201 to 471,860 _RS18280 ABZR87_RS18285: ABZR87_RS18285 - helix-turn-helix domain-containing protein, at 471,995 to 472,981 _RS18285 Position (kb) 471 472Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 470.212 kb on + strandat 470.212 kb on + strandat 470.213 kb on - strandat 470.213 kb on - strandat 470.352 kb on + strandat 470.403 kb on + strandat 470.404 kb on - strandat 470.684 kb on + strand, within ABZR87_RS18275at 470.684 kb on + strand, within ABZR87_RS18275at 470.684 kb on + strand, within ABZR87_RS18275at 470.684 kb on + strand, within ABZR87_RS18275at 470.684 kb on + strand, within ABZR87_RS18275at 470.684 kb on + strand, within ABZR87_RS18275at 470.685 kb on - strand, within ABZR87_RS18275at 470.685 kb on - strand, within ABZR87_RS18275at 470.749 kb on + strand, within ABZR87_RS18275at 470.874 kb on + strand, within ABZR87_RS18275at 470.874 kb on + strand, within ABZR87_RS18275at 470.874 kb on + strand, within ABZR87_RS18275at 470.874 kb on + strand, within ABZR87_RS18275at 470.874 kb on + strand, within ABZR87_RS18275at 470.874 kb on + strand, within ABZR87_RS18275at 470.874 kb on + strand, within ABZR87_RS18275at 470.875 kb on - strand, within ABZR87_RS18275at 470.875 kb on - strand, within ABZR87_RS18275at 470.875 kb on - strand, within ABZR87_RS18275at 470.929 kb on + strand, within ABZR87_RS18275at 470.930 kb on - strand, within ABZR87_RS18275at 470.999 kb on + strand, within ABZR87_RS18275at 471.000 kb on - strand, within ABZR87_RS18275at 471.000 kb on - strand, within ABZR87_RS18275at 471.040 kb on - strand, within ABZR87_RS18275at 471.042 kb on + strand, within ABZR87_RS18275at 471.042 kb on + strand, within ABZR87_RS18275at 471.043 kb on - strand, within ABZR87_RS18275at 471.043 kb on - strand, within ABZR87_RS18275at 471.043 kb on - strand, within ABZR87_RS18275at 471.043 kb on - strand, within ABZR87_RS18275at 471.043 kb on - strand, within ABZR87_RS18275at 471.147 kb on + strandat 471.262 kb on + strandat 471.262 kb on + strandat 471.262 kb on + strandat 471.262 kb on + strandat 471.262 kb on + strandat 471.263 kb on - strandat 471.263 kb on - strandat 471.263 kb on - strandat 471.263 kb on - strandat 471.409 kb on + strand, within ABZR87_RS18280at 471.410 kb on - strand, within ABZR87_RS18280at 471.410 kb on - strand, within ABZR87_RS18280at 471.505 kb on + strand, within ABZR87_RS18280at 471.524 kb on + strand, within ABZR87_RS18280at 471.598 kb on + strand, within ABZR87_RS18280at 471.598 kb on + strand, within ABZR87_RS18280at 471.598 kb on + strand, within ABZR87_RS18280at 471.599 kb on - strand, within ABZR87_RS18280at 471.599 kb on - strand, within ABZR87_RS18280at 471.599 kb on - strand, within ABZR87_RS18280at 471.775 kb on + strand, within ABZR87_RS18280at 471.855 kb on - strandat 471.930 kb on + strandat 471.930 kb on + strandat 471.931 kb on - strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.994 kb on + strandat 471.995 kb on - strandat 471.995 kb on - strandat 471.995 kb on - strandat 471.995 kb on - strandat 471.995 kb on - strandat 471.995 kb on - strandat 472.038 kb on + strandat 472.038 kb on + strandat 472.038 kb on + strandat 472.039 kb on - strandat 472.039 kb on - strandat 472.046 kb on - strandat 472.121 kb on + strand, within ABZR87_RS18285at 472.121 kb on + strand, within ABZR87_RS18285at 472.121 kb on + strand, within ABZR87_RS18285at 472.121 kb on + strand, within ABZR87_RS18285at 472.122 kb on - strand, within ABZR87_RS18285at 472.122 kb on - strand, within ABZR87_RS18285at 472.122 kb on - strand, within ABZR87_RS18285at 472.259 kb on - strand, within ABZR87_RS18285at 472.259 kb on - strand, within ABZR87_RS18285at 472.307 kb on + strand, within ABZR87_RS18285at 472.307 kb on + strand, within ABZR87_RS18285at 472.307 kb on + strand, within ABZR87_RS18285at 472.307 kb on + strand, within ABZR87_RS18285at 472.308 kb on - strand, within ABZR87_RS18285at 472.440 kb on + strand, within ABZR87_RS18285at 472.441 kb on - strand, within ABZR87_RS18285at 472.441 kb on - strand, within ABZR87_RS18285at 472.463 kb on + strand, within ABZR87_RS18285at 472.464 kb on - strand, within ABZR87_RS18285at 472.464 kb on - strand, within ABZR87_RS18285at 472.464 kb on - strand, within ABZR87_RS18285at 472.625 kb on + strand, within ABZR87_RS18285at 472.625 kb on + strand, within ABZR87_RS18285at 472.625 kb on + strand, within ABZR87_RS18285at 472.626 kb on - strand, within ABZR87_RS18285at 472.626 kb on - strand, within ABZR87_RS18285at 472.626 kb on - strand, within ABZR87_RS18285at 472.829 kb on + strand, within ABZR87_RS18285

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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470,212 + +0.3
470,212 + +0.3
470,213 - +0.3
470,213 - -0.9
470,352 + -2.0
470,403 + +1.5
470,404 - -3.7
470,684 + ABZR87_RS18275 0.44 -0.1
470,684 + ABZR87_RS18275 0.44 -1.5
470,684 + ABZR87_RS18275 0.44 +1.0
470,684 + ABZR87_RS18275 0.44 +1.3
470,684 + ABZR87_RS18275 0.44 +1.6
470,684 + ABZR87_RS18275 0.44 -0.8
470,685 - ABZR87_RS18275 0.44 -3.2
470,685 - ABZR87_RS18275 0.44 -0.5
470,749 + ABZR87_RS18275 0.51 +0.3
470,874 + ABZR87_RS18275 0.67 +1.1
470,874 + ABZR87_RS18275 0.67 +0.3
470,874 + ABZR87_RS18275 0.67 +0.1
470,874 + ABZR87_RS18275 0.67 +0.5
470,874 + ABZR87_RS18275 0.67 +0.6
470,874 + ABZR87_RS18275 0.67 -1.2
470,874 + ABZR87_RS18275 0.67 -0.8
470,875 - ABZR87_RS18275 0.67 -0.7
470,875 - ABZR87_RS18275 0.67 -1.5
470,875 - ABZR87_RS18275 0.67 -1.5
470,929 + ABZR87_RS18275 0.73 -0.0
470,930 - ABZR87_RS18275 0.73 -1.8
470,999 + ABZR87_RS18275 0.82 -4.9
471,000 - ABZR87_RS18275 0.82 -1.4
471,000 - ABZR87_RS18275 0.82 +0.7
471,040 - ABZR87_RS18275 0.87 -1.2
471,042 + ABZR87_RS18275 0.87 -1.5
471,042 + ABZR87_RS18275 0.87 +0.2
471,043 - ABZR87_RS18275 0.87 +0.2
471,043 - ABZR87_RS18275 0.87 -2.1
471,043 - ABZR87_RS18275 0.87 -2.0
471,043 - ABZR87_RS18275 0.87 +0.2
471,043 - ABZR87_RS18275 0.87 -2.0
471,147 + +1.6
471,262 + -2.0
471,262 + +1.4
471,262 + +1.4
471,262 + -2.4
471,262 + -0.5
471,263 - +0.8
471,263 - -0.2
471,263 - +1.3
471,263 - -0.3
471,409 + ABZR87_RS18280 0.32 +1.4
471,410 - ABZR87_RS18280 0.32 -0.8
471,410 - ABZR87_RS18280 0.32 -2.1
471,505 + ABZR87_RS18280 0.46 +1.7
471,524 + ABZR87_RS18280 0.49 -1.9
471,598 + ABZR87_RS18280 0.60 -1.7
471,598 + ABZR87_RS18280 0.60 +1.1
471,598 + ABZR87_RS18280 0.60 +0.4
471,599 - ABZR87_RS18280 0.60 +0.1
471,599 - ABZR87_RS18280 0.60 -2.0
471,599 - ABZR87_RS18280 0.60 -1.6
471,775 + ABZR87_RS18280 0.87 +1.1
471,855 - +1.3
471,930 + +1.5
471,930 + -0.2
471,931 - -3.0
471,994 + -0.5
471,994 + +0.2
471,994 + +0.5
471,994 + +1.2
471,994 + +0.3
471,994 + -2.1
471,994 + -0.2
471,994 + +0.5
471,994 + -0.7
471,994 + -1.7
471,995 - -1.3
471,995 - -0.1
471,995 - +0.8
471,995 - -3.2
471,995 - +0.1
471,995 - -1.0
472,038 + -2.1
472,038 + +0.3
472,038 + +1.1
472,039 - +1.6
472,039 - -2.3
472,046 - +0.2
472,121 + ABZR87_RS18285 0.13 +1.1
472,121 + ABZR87_RS18285 0.13 +0.8
472,121 + ABZR87_RS18285 0.13 -1.2
472,121 + ABZR87_RS18285 0.13 -0.1
472,122 - ABZR87_RS18285 0.13 -1.8
472,122 - ABZR87_RS18285 0.13 -0.7
472,122 - ABZR87_RS18285 0.13 -1.4
472,259 - ABZR87_RS18285 0.27 +0.2
472,259 - ABZR87_RS18285 0.27 +1.4
472,307 + ABZR87_RS18285 0.32 +0.6
472,307 + ABZR87_RS18285 0.32 +1.1
472,307 + ABZR87_RS18285 0.32 +0.3
472,307 + ABZR87_RS18285 0.32 +2.2
472,308 - ABZR87_RS18285 0.32 -1.2
472,440 + ABZR87_RS18285 0.45 -0.1
472,441 - ABZR87_RS18285 0.45 -0.1
472,441 - ABZR87_RS18285 0.45 -1.3
472,463 + ABZR87_RS18285 0.47 +0.5
472,464 - ABZR87_RS18285 0.48 -0.0
472,464 - ABZR87_RS18285 0.48 -0.7
472,464 - ABZR87_RS18285 0.48 +2.1
472,625 + ABZR87_RS18285 0.64 +3.0
472,625 + ABZR87_RS18285 0.64 -0.9
472,625 + ABZR87_RS18285 0.64 +0.1
472,626 - ABZR87_RS18285 0.64 -1.5
472,626 - ABZR87_RS18285 0.64 +1.7
472,626 - ABZR87_RS18285 0.64 +1.7
472,829 + ABZR87_RS18285 0.84 -3.0

Or see this region's nucleotide sequence