Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17600 and ABZR87_RS17605 overlap by 4 nucleotides ABZR87_RS17605 and ABZR87_RS17610 overlap by 4 nucleotides
ABZR87_RS17600: ABZR87_RS17600 - bifunctional lysylphosphatidylglycerol flippase/synthetase MprF, at 311,460 to 314,093
_RS17600
ABZR87_RS17605: ABZR87_RS17605 - AcvB/VirJ family lysyl-phosphatidylglycerol hydrolase, at 314,090 to 315,853
_RS17605
ABZR87_RS17610: ABZR87_RS17610 - SulP family inorganic anion transporter, at 315,850 to 317,619
_RS17610
Position (kb) 314
315
316 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 313.224 kb on + strand, within ABZR87_RS17600 at 313.224 kb on + strand, within ABZR87_RS17600 at 313.224 kb on + strand, within ABZR87_RS17600 at 313.224 kb on + strand, within ABZR87_RS17600 at 313.225 kb on - strand, within ABZR87_RS17600 at 313.225 kb on - strand, within ABZR87_RS17600 at 313.225 kb on - strand, within ABZR87_RS17600 at 313.225 kb on - strand, within ABZR87_RS17600 at 313.307 kb on + strand, within ABZR87_RS17600 at 313.377 kb on + strand, within ABZR87_RS17600 at 313.378 kb on - strand, within ABZR87_RS17600 at 313.401 kb on + strand, within ABZR87_RS17600 at 313.401 kb on + strand, within ABZR87_RS17600 at 313.401 kb on + strand, within ABZR87_RS17600 at 313.401 kb on + strand, within ABZR87_RS17600 at 313.401 kb on + strand, within ABZR87_RS17600 at 313.422 kb on + strand, within ABZR87_RS17600 at 313.422 kb on + strand, within ABZR87_RS17600 at 313.422 kb on + strand, within ABZR87_RS17600 at 313.422 kb on + strand, within ABZR87_RS17600 at 313.422 kb on + strand, within ABZR87_RS17600 at 313.422 kb on + strand, within ABZR87_RS17600 at 313.422 kb on + strand, within ABZR87_RS17600 at 313.422 kb on + strand, within ABZR87_RS17600 at 313.423 kb on - strand, within ABZR87_RS17600 at 313.423 kb on - strand, within ABZR87_RS17600 at 313.423 kb on - strand, within ABZR87_RS17600 at 313.423 kb on - strand, within ABZR87_RS17600 at 313.423 kb on - strand, within ABZR87_RS17600 at 313.423 kb on - strand, within ABZR87_RS17600 at 313.423 kb on - strand, within ABZR87_RS17600 at 313.423 kb on - strand, within ABZR87_RS17600 at 313.638 kb on + strand, within ABZR87_RS17600 at 313.639 kb on - strand, within ABZR87_RS17600 at 313.639 kb on - strand, within ABZR87_RS17600 at 313.639 kb on - strand, within ABZR87_RS17600 at 313.639 kb on - strand, within ABZR87_RS17600 at 313.828 kb on - strand, within ABZR87_RS17600 at 313.828 kb on - strand, within ABZR87_RS17600 at 313.828 kb on - strand, within ABZR87_RS17600 at 313.938 kb on + strand at 313.939 kb on - strand at 313.939 kb on - strand at 313.998 kb on + strand at 313.999 kb on - strand at 314.019 kb on - strand at 314.140 kb on - strand at 314.323 kb on + strand, within ABZR87_RS17605 at 314.324 kb on - strand, within ABZR87_RS17605 at 314.324 kb on - strand, within ABZR87_RS17605 at 314.702 kb on + strand, within ABZR87_RS17605 at 314.768 kb on + strand, within ABZR87_RS17605 at 314.769 kb on - strand, within ABZR87_RS17605 at 315.070 kb on + strand, within ABZR87_RS17605 at 315.260 kb on - strand, within ABZR87_RS17605 at 315.383 kb on + strand, within ABZR87_RS17605 at 315.438 kb on + strand, within ABZR87_RS17605 at 315.446 kb on + strand, within ABZR87_RS17605 at 315.696 kb on - strand at 315.696 kb on - strand at 315.791 kb on + strand at 315.796 kb on + strand at 315.796 kb on + strand at 315.796 kb on + strand at 315.796 kb on + strand at 315.796 kb on + strand at 315.797 kb on - strand at 315.851 kb on + strand at 315.982 kb on + strand at 315.982 kb on + strand at 315.982 kb on + strand at 315.983 kb on - strand at 316.469 kb on + strand, within ABZR87_RS17610 at 316.658 kb on + strand, within ABZR87_RS17610 at 316.784 kb on + strand, within ABZR87_RS17610 at 316.785 kb on - strand, within ABZR87_RS17610 at 316.796 kb on + strand, within ABZR87_RS17610
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 313,224 + ABZR87_RS17600 0.67 -0.3 313,224 + ABZR87_RS17600 0.67 +1.3 313,224 + ABZR87_RS17600 0.67 +0.9 313,224 + ABZR87_RS17600 0.67 +0.9 313,225 - ABZR87_RS17600 0.67 -3.0 313,225 - ABZR87_RS17600 0.67 +1.2 313,225 - ABZR87_RS17600 0.67 -3.4 313,225 - ABZR87_RS17600 0.67 -0.8 313,307 + ABZR87_RS17600 0.70 +0.7 313,377 + ABZR87_RS17600 0.73 +0.3 313,378 - ABZR87_RS17600 0.73 -2.1 313,401 + ABZR87_RS17600 0.74 +0.5 313,401 + ABZR87_RS17600 0.74 +1.8 313,401 + ABZR87_RS17600 0.74 +0.8 313,401 + ABZR87_RS17600 0.74 -1.4 313,401 + ABZR87_RS17600 0.74 -3.8 313,422 + ABZR87_RS17600 0.74 +0.1 313,422 + ABZR87_RS17600 0.74 +2.3 313,422 + ABZR87_RS17600 0.74 +1.2 313,422 + ABZR87_RS17600 0.74 -0.7 313,422 + ABZR87_RS17600 0.74 +1.6 313,422 + ABZR87_RS17600 0.74 -1.8 313,422 + ABZR87_RS17600 0.74 -1.2 313,422 + ABZR87_RS17600 0.74 +0.5 313,423 - ABZR87_RS17600 0.75 +1.0 313,423 - ABZR87_RS17600 0.75 +0.1 313,423 - ABZR87_RS17600 0.75 +0.3 313,423 - ABZR87_RS17600 0.75 -3.1 313,423 - ABZR87_RS17600 0.75 -1.6 313,423 - ABZR87_RS17600 0.75 -1.6 313,423 - ABZR87_RS17600 0.75 -3.6 313,423 - ABZR87_RS17600 0.75 -0.3 313,638 + ABZR87_RS17600 0.83 -0.8 313,639 - ABZR87_RS17600 0.83 +0.1 313,639 - ABZR87_RS17600 0.83 +0.8 313,639 - ABZR87_RS17600 0.83 +1.2 313,639 - ABZR87_RS17600 0.83 -2.4 313,828 - ABZR87_RS17600 0.90 -0.3 313,828 - ABZR87_RS17600 0.90 -3.4 313,828 - ABZR87_RS17600 0.90 +0.0 313,938 + +0.5 313,939 - -0.1 313,939 - +0.1 313,998 + -0.2 313,999 - -1.2 314,019 - -2.2 314,140 - -0.8 314,323 + ABZR87_RS17605 0.13 +2.9 314,324 - ABZR87_RS17605 0.13 -0.5 314,324 - ABZR87_RS17605 0.13 +1.3 314,702 + ABZR87_RS17605 0.35 +0.2 314,768 + ABZR87_RS17605 0.38 +1.5 314,769 - ABZR87_RS17605 0.38 -3.1 315,070 + ABZR87_RS17605 0.56 +0.3 315,260 - ABZR87_RS17605 0.66 +0.9 315,383 + ABZR87_RS17605 0.73 -0.6 315,438 + ABZR87_RS17605 0.76 +1.3 315,446 + ABZR87_RS17605 0.77 +1.9 315,696 - -0.6 315,696 - +3.5 315,791 + -0.0 315,796 + +0.4 315,796 + -1.1 315,796 + -0.2 315,796 + -1.6 315,796 + -3.6 315,797 - +1.4 315,851 + +1.6 315,982 + -0.6 315,982 + -2.1 315,982 + -2.1 315,983 - +1.2 316,469 + ABZR87_RS17610 0.35 +1.4 316,658 + ABZR87_RS17610 0.46 -0.1 316,784 + ABZR87_RS17610 0.53 +3.2 316,785 - ABZR87_RS17610 0.53 +0.1 316,796 + ABZR87_RS17610 0.53 -1.2
Or see this region's nucleotide sequence