Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17060

Experiment: 4-Hydroxybenzoic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS17050 and ABZR87_RS17055 are separated by 97 nucleotidesABZR87_RS17055 and ABZR87_RS17060 are separated by 33 nucleotidesABZR87_RS17060 and ABZR87_RS17065 are separated by 128 nucleotidesABZR87_RS17065 and ABZR87_RS17070 are separated by 12 nucleotides ABZR87_RS17050: ABZR87_RS17050 - NAD(P)H-dependent oxidoreductase, at 175,644 to 176,432 _RS17050 ABZR87_RS17055: ABZR87_RS17055 - sulfite exporter TauE/SafE family protein, at 176,530 to 177,312 _RS17055 ABZR87_RS17060: ABZR87_RS17060 - carboxymuconolactone decarboxylase family protein, at 177,346 to 177,747 _RS17060 ABZR87_RS17065: ABZR87_RS17065 - hypothetical protein, at 177,876 to 178,208 _RS17065 ABZR87_RS17070: ABZR87_RS17070 - alpha/beta hydrolase, at 178,221 to 179,030 _RS17070 Position (kb) 177 178Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 176.346 kb on + strand, within ABZR87_RS17050at 176.346 kb on + strand, within ABZR87_RS17050at 176.431 kb on - strandat 176.443 kb on + strandat 176.476 kb on + strandat 176.483 kb on + strandat 176.483 kb on + strandat 176.484 kb on - strandat 176.484 kb on - strandat 176.484 kb on - strandat 176.654 kb on - strand, within ABZR87_RS17055at 176.731 kb on + strand, within ABZR87_RS17055at 176.800 kb on + strand, within ABZR87_RS17055at 176.801 kb on - strand, within ABZR87_RS17055at 176.801 kb on - strand, within ABZR87_RS17055at 176.801 kb on - strand, within ABZR87_RS17055at 176.847 kb on + strand, within ABZR87_RS17055at 176.848 kb on - strand, within ABZR87_RS17055at 176.884 kb on + strand, within ABZR87_RS17055at 176.884 kb on + strand, within ABZR87_RS17055at 176.884 kb on + strand, within ABZR87_RS17055at 176.885 kb on - strand, within ABZR87_RS17055at 177.061 kb on - strand, within ABZR87_RS17055at 177.061 kb on - strand, within ABZR87_RS17055at 177.133 kb on + strand, within ABZR87_RS17055at 177.133 kb on + strand, within ABZR87_RS17055at 177.133 kb on + strand, within ABZR87_RS17055at 177.133 kb on + strand, within ABZR87_RS17055at 177.133 kb on + strand, within ABZR87_RS17055at 177.134 kb on - strand, within ABZR87_RS17055at 177.134 kb on - strand, within ABZR87_RS17055at 177.134 kb on - strand, within ABZR87_RS17055at 177.134 kb on - strand, within ABZR87_RS17055at 177.134 kb on - strand, within ABZR87_RS17055at 177.642 kb on + strand, within ABZR87_RS17060at 177.643 kb on - strand, within ABZR87_RS17060at 177.643 kb on - strand, within ABZR87_RS17060at 177.652 kb on + strand, within ABZR87_RS17060at 177.652 kb on + strand, within ABZR87_RS17060at 177.652 kb on + strand, within ABZR87_RS17060at 177.652 kb on + strand, within ABZR87_RS17060at 177.653 kb on - strand, within ABZR87_RS17060at 177.746 kb on - strandat 177.746 kb on - strandat 177.782 kb on + strandat 177.782 kb on + strandat 177.783 kb on - strandat 177.815 kb on - strandat 177.815 kb on - strandat 177.999 kb on + strand, within ABZR87_RS17065at 178.000 kb on - strand, within ABZR87_RS17065at 178.000 kb on - strand, within ABZR87_RS17065at 178.080 kb on + strand, within ABZR87_RS17065at 178.080 kb on + strand, within ABZR87_RS17065at 178.081 kb on - strand, within ABZR87_RS17065at 178.161 kb on + strand, within ABZR87_RS17065at 178.209 kb on + strandat 178.209 kb on + strandat 178.210 kb on - strandat 178.210 kb on - strandat 178.210 kb on - strandat 178.329 kb on + strand, within ABZR87_RS17070at 178.330 kb on - strand, within ABZR87_RS17070at 178.330 kb on - strand, within ABZR87_RS17070at 178.330 kb on - strand, within ABZR87_RS17070at 178.330 kb on - strand, within ABZR87_RS17070at 178.330 kb on - strand, within ABZR87_RS17070at 178.386 kb on - strand, within ABZR87_RS17070at 178.491 kb on + strand, within ABZR87_RS17070at 178.491 kb on + strand, within ABZR87_RS17070at 178.491 kb on + strand, within ABZR87_RS17070at 178.491 kb on + strand, within ABZR87_RS17070at 178.492 kb on - strand, within ABZR87_RS17070at 178.497 kb on + strand, within ABZR87_RS17070at 178.498 kb on - strand, within ABZR87_RS17070at 178.498 kb on - strand, within ABZR87_RS17070at 178.728 kb on + strand, within ABZR87_RS17070at 178.729 kb on - strand, within ABZR87_RS17070

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
remove
176,346 + ABZR87_RS17050 0.89 -0.5
176,346 + ABZR87_RS17050 0.89 -0.2
176,431 - -0.1
176,443 + -3.6
176,476 + -2.4
176,483 + -1.5
176,483 + +1.5
176,484 - -0.1
176,484 - -0.9
176,484 - +1.1
176,654 - ABZR87_RS17055 0.16 -2.0
176,731 + ABZR87_RS17055 0.26 -1.7
176,800 + ABZR87_RS17055 0.34 -1.2
176,801 - ABZR87_RS17055 0.35 -3.3
176,801 - ABZR87_RS17055 0.35 +0.2
176,801 - ABZR87_RS17055 0.35 -1.0
176,847 + ABZR87_RS17055 0.40 +0.3
176,848 - ABZR87_RS17055 0.41 +0.1
176,884 + ABZR87_RS17055 0.45 -3.0
176,884 + ABZR87_RS17055 0.45 +0.5
176,884 + ABZR87_RS17055 0.45 -1.2
176,885 - ABZR87_RS17055 0.45 +1.0
177,061 - ABZR87_RS17055 0.68 -1.2
177,061 - ABZR87_RS17055 0.68 +0.5
177,133 + ABZR87_RS17055 0.77 +1.2
177,133 + ABZR87_RS17055 0.77 -3.0
177,133 + ABZR87_RS17055 0.77 +0.8
177,133 + ABZR87_RS17055 0.77 -0.6
177,133 + ABZR87_RS17055 0.77 +0.1
177,134 - ABZR87_RS17055 0.77 +0.3
177,134 - ABZR87_RS17055 0.77 -0.1
177,134 - ABZR87_RS17055 0.77 -0.6
177,134 - ABZR87_RS17055 0.77 +0.4
177,134 - ABZR87_RS17055 0.77 +0.2
177,642 + ABZR87_RS17060 0.74 -1.1
177,643 - ABZR87_RS17060 0.74 +1.7
177,643 - ABZR87_RS17060 0.74 +1.4
177,652 + ABZR87_RS17060 0.76 -0.4
177,652 + ABZR87_RS17060 0.76 -0.8
177,652 + ABZR87_RS17060 0.76 +1.5
177,652 + ABZR87_RS17060 0.76 +0.3
177,653 - ABZR87_RS17060 0.76 +0.6
177,746 - -0.4
177,746 - -2.3
177,782 + -0.5
177,782 + -0.2
177,783 - -1.0
177,815 - +0.4
177,815 - +2.1
177,999 + ABZR87_RS17065 0.37 -0.6
178,000 - ABZR87_RS17065 0.37 +1.3
178,000 - ABZR87_RS17065 0.37 -1.2
178,080 + ABZR87_RS17065 0.61 -2.3
178,080 + ABZR87_RS17065 0.61 -0.5
178,081 - ABZR87_RS17065 0.62 -0.0
178,161 + ABZR87_RS17065 0.86 +0.8
178,209 + -2.5
178,209 + +1.0
178,210 - +1.6
178,210 - +0.6
178,210 - -0.3
178,329 + ABZR87_RS17070 0.13 +0.7
178,330 - ABZR87_RS17070 0.13 +0.8
178,330 - ABZR87_RS17070 0.13 -0.4
178,330 - ABZR87_RS17070 0.13 -2.8
178,330 - ABZR87_RS17070 0.13 -0.4
178,330 - ABZR87_RS17070 0.13 -1.2
178,386 - ABZR87_RS17070 0.20 -0.5
178,491 + ABZR87_RS17070 0.33 +1.1
178,491 + ABZR87_RS17070 0.33 +1.5
178,491 + ABZR87_RS17070 0.33 +1.5
178,491 + ABZR87_RS17070 0.33 -1.2
178,492 - ABZR87_RS17070 0.33 -2.5
178,497 + ABZR87_RS17070 0.34 -0.9
178,498 - ABZR87_RS17070 0.34 -1.1
178,498 - ABZR87_RS17070 0.34 -1.3
178,728 + ABZR87_RS17070 0.63 +1.8
178,729 - ABZR87_RS17070 0.63 -0.1

Or see this region's nucleotide sequence