Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS15770 and ABZR87_RS15775 are separated by 84 nucleotides ABZR87_RS15775 and ABZR87_RS15780 overlap by 8 nucleotides ABZR87_RS15780 and ABZR87_RS15785 are separated by 22 nucleotides
ABZR87_RS15770: ABZR87_RS15770 - branched-chain amino acid ABC transporter permease, at 3,329,767 to 3,330,636
_RS15770
ABZR87_RS15775: ABZR87_RS15775 - 4-carboxymuconolactone decarboxylase, at 3,330,721 to 3,331,119
_RS15775
ABZR87_RS15780: ABZR87_RS15780 - 3-oxoadipate enol-lactonase, at 3,331,112 to 3,331,924
_RS15780
ABZR87_RS15785: ABZR87_RS15785 - 3-carboxy-cis,cis-muconate cycloisomerase, at 3,331,947 to 3,333,308
_RS15785
Position (kb) 3331
3332 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 3330.268 kb on + strand, within ABZR87_RS15770 at 3330.303 kb on - strand, within ABZR87_RS15770 at 3330.374 kb on + strand, within ABZR87_RS15770 at 3330.374 kb on + strand, within ABZR87_RS15770 at 3330.375 kb on - strand, within ABZR87_RS15770 at 3330.494 kb on + strand, within ABZR87_RS15770 at 3330.495 kb on - strand, within ABZR87_RS15770 at 3330.597 kb on - strand at 3330.723 kb on - strand at 3330.809 kb on + strand, within ABZR87_RS15775 at 3330.809 kb on + strand, within ABZR87_RS15775 at 3330.809 kb on + strand, within ABZR87_RS15775 at 3330.990 kb on - strand, within ABZR87_RS15775 at 3331.101 kb on - strand at 3331.174 kb on - strand at 3331.224 kb on + strand, within ABZR87_RS15780 at 3331.224 kb on + strand, within ABZR87_RS15780 at 3331.224 kb on + strand, within ABZR87_RS15780 at 3331.484 kb on - strand, within ABZR87_RS15780 at 3331.526 kb on - strand, within ABZR87_RS15780 at 3331.668 kb on + strand, within ABZR87_RS15780 at 3331.669 kb on - strand, within ABZR87_RS15780 at 3331.669 kb on - strand, within ABZR87_RS15780 at 3331.669 kb on - strand, within ABZR87_RS15780 at 3331.813 kb on + strand, within ABZR87_RS15780 at 3331.813 kb on + strand, within ABZR87_RS15780 at 3331.814 kb on - strand, within ABZR87_RS15780 at 3331.814 kb on - strand, within ABZR87_RS15780 at 3331.814 kb on - strand, within ABZR87_RS15780 at 3331.814 kb on - strand, within ABZR87_RS15780 at 3331.814 kb on - strand, within ABZR87_RS15780 at 3331.890 kb on + strand at 3331.891 kb on - strand at 3332.012 kb on - strand at 3332.012 kb on - strand at 3332.066 kb on + strand at 3332.094 kb on + strand, within ABZR87_RS15785 at 3332.094 kb on + strand, within ABZR87_RS15785 at 3332.095 kb on - strand, within ABZR87_RS15785 at 3332.121 kb on + strand, within ABZR87_RS15785 at 3332.121 kb on + strand, within ABZR87_RS15785 at 3332.122 kb on - strand, within ABZR87_RS15785 at 3332.225 kb on + strand, within ABZR87_RS15785 at 3332.232 kb on + strand, within ABZR87_RS15785 at 3332.233 kb on - strand, within ABZR87_RS15785 at 3332.466 kb on - strand, within ABZR87_RS15785 at 3332.466 kb on - strand, within ABZR87_RS15785 at 3332.466 kb on - strand, within ABZR87_RS15785 at 3332.873 kb on + strand, within ABZR87_RS15785
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 3,330,268 + ABZR87_RS15770 0.58 +2.1 3,330,303 - ABZR87_RS15770 0.62 -1.5 3,330,374 + ABZR87_RS15770 0.70 -2.2 3,330,374 + ABZR87_RS15770 0.70 -2.4 3,330,375 - ABZR87_RS15770 0.70 -0.5 3,330,494 + ABZR87_RS15770 0.84 -1.1 3,330,495 - ABZR87_RS15770 0.84 -2.8 3,330,597 - -0.6 3,330,723 - -0.3 3,330,809 + ABZR87_RS15775 0.22 -2.3 3,330,809 + ABZR87_RS15775 0.22 -4.1 3,330,809 + ABZR87_RS15775 0.22 -2.2 3,330,990 - ABZR87_RS15775 0.67 -4.3 3,331,101 - -3.6 3,331,174 - -0.2 3,331,224 + ABZR87_RS15780 0.14 -3.4 3,331,224 + ABZR87_RS15780 0.14 -3.2 3,331,224 + ABZR87_RS15780 0.14 -4.0 3,331,484 - ABZR87_RS15780 0.46 -3.1 3,331,526 - ABZR87_RS15780 0.51 -0.8 3,331,668 + ABZR87_RS15780 0.68 -4.3 3,331,669 - ABZR87_RS15780 0.69 -4.9 3,331,669 - ABZR87_RS15780 0.69 -3.1 3,331,669 - ABZR87_RS15780 0.69 -3.7 3,331,813 + ABZR87_RS15780 0.86 -2.3 3,331,813 + ABZR87_RS15780 0.86 -2.7 3,331,814 - ABZR87_RS15780 0.86 -1.8 3,331,814 - ABZR87_RS15780 0.86 -2.5 3,331,814 - ABZR87_RS15780 0.86 -1.0 3,331,814 - ABZR87_RS15780 0.86 -2.7 3,331,814 - ABZR87_RS15780 0.86 -4.6 3,331,890 + -2.0 3,331,891 - -3.0 3,332,012 - -4.3 3,332,012 - -3.3 3,332,066 + -4.0 3,332,094 + ABZR87_RS15785 0.11 -2.9 3,332,094 + ABZR87_RS15785 0.11 -2.2 3,332,095 - ABZR87_RS15785 0.11 -4.0 3,332,121 + ABZR87_RS15785 0.13 -3.5 3,332,121 + ABZR87_RS15785 0.13 -3.3 3,332,122 - ABZR87_RS15785 0.13 -3.6 3,332,225 + ABZR87_RS15785 0.20 -1.1 3,332,232 + ABZR87_RS15785 0.21 -1.4 3,332,233 - ABZR87_RS15785 0.21 -2.0 3,332,466 - ABZR87_RS15785 0.38 -4.7 3,332,466 - ABZR87_RS15785 0.38 -0.6 3,332,466 - ABZR87_RS15785 0.38 -1.6 3,332,873 + ABZR87_RS15785 0.68 -3.3
Or see this region's nucleotide sequence