Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS15415 and ABZR87_RS15420 overlap by 4 nucleotides ABZR87_RS15420 and ABZR87_RS15425 are separated by 72 nucleotides ABZR87_RS15425 and ABZR87_RS15430 are separated by 21 nucleotides
ABZR87_RS15415: ABZR87_RS15415 - oxygen-dependent coproporphyrinogen oxidase, at 3,244,778 to 3,245,686
_RS15415
ABZR87_RS15420: ABZR87_RS15420 - nicotinate-nucleotide adenylyltransferase, at 3,245,683 to 3,246,393
_RS15420
ABZR87_RS15425: ABZR87_RS15425 - ribosome silencing factor, at 3,246,466 to 3,247,107
_RS15425
ABZR87_RS15430: ABZR87_RS15430 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 3,247,129 to 3,247,599
_RS15430
Position (kb)
3245
3246
3247 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3244.714 kb on + strand at 3244.714 kb on + strand at 3244.715 kb on - strand at 3244.715 kb on - strand at 3244.731 kb on + strand at 3244.731 kb on + strand at 3244.731 kb on + strand at 3244.731 kb on + strand at 3245.682 kb on + strand at 3245.682 kb on + strand at 3245.683 kb on - strand at 3246.465 kb on + strand at 3246.465 kb on + strand at 3246.466 kb on - strand at 3246.470 kb on - strand at 3246.471 kb on + strand at 3246.472 kb on - strand at 3246.482 kb on + strand at 3246.543 kb on + strand, within ABZR87_RS15425 at 3246.543 kb on + strand, within ABZR87_RS15425 at 3246.543 kb on + strand, within ABZR87_RS15425 at 3246.544 kb on - strand, within ABZR87_RS15425 at 3246.544 kb on - strand, within ABZR87_RS15425 at 3246.544 kb on - strand, within ABZR87_RS15425 at 3246.757 kb on + strand, within ABZR87_RS15425 at 3246.757 kb on + strand, within ABZR87_RS15425 at 3246.757 kb on + strand, within ABZR87_RS15425 at 3246.757 kb on + strand, within ABZR87_RS15425 at 3246.757 kb on + strand, within ABZR87_RS15425 at 3246.758 kb on - strand, within ABZR87_RS15425 at 3246.758 kb on - strand, within ABZR87_RS15425 at 3246.758 kb on - strand, within ABZR87_RS15425 at 3246.758 kb on - strand, within ABZR87_RS15425 at 3246.847 kb on + strand, within ABZR87_RS15425 at 3246.848 kb on - strand, within ABZR87_RS15425 at 3246.848 kb on - strand, within ABZR87_RS15425 at 3247.009 kb on - strand, within ABZR87_RS15425 at 3247.106 kb on - strand at 3247.106 kb on - strand at 3247.195 kb on + strand, within ABZR87_RS15430 at 3247.196 kb on - strand, within ABZR87_RS15430 at 3247.196 kb on - strand, within ABZR87_RS15430 at 3247.196 kb on - strand, within ABZR87_RS15430 at 3247.196 kb on - strand, within ABZR87_RS15430 at 3247.232 kb on + strand, within ABZR87_RS15430 at 3247.232 kb on + strand, within ABZR87_RS15430
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 3,244,714 + +1.2 3,244,714 + -0.9 3,244,715 - +0.5 3,244,715 - +1.0 3,244,731 + +1.1 3,244,731 + +0.4 3,244,731 + -1.9 3,244,731 + -0.8 3,245,682 + +1.4 3,245,682 + -0.8 3,245,683 - -2.6 3,246,465 + +2.4 3,246,465 + -0.7 3,246,466 - -1.5 3,246,470 - +1.1 3,246,471 + +1.8 3,246,472 - +0.8 3,246,482 + +2.8 3,246,543 + ABZR87_RS15425 0.12 -3.2 3,246,543 + ABZR87_RS15425 0.12 -0.8 3,246,543 + ABZR87_RS15425 0.12 -0.8 3,246,544 - ABZR87_RS15425 0.12 -0.8 3,246,544 - ABZR87_RS15425 0.12 +0.2 3,246,544 - ABZR87_RS15425 0.12 -0.7 3,246,757 + ABZR87_RS15425 0.45 -1.3 3,246,757 + ABZR87_RS15425 0.45 +3.4 3,246,757 + ABZR87_RS15425 0.45 -1.7 3,246,757 + ABZR87_RS15425 0.45 -1.7 3,246,757 + ABZR87_RS15425 0.45 +1.6 3,246,758 - ABZR87_RS15425 0.45 +0.2 3,246,758 - ABZR87_RS15425 0.45 -0.5 3,246,758 - ABZR87_RS15425 0.45 -0.3 3,246,758 - ABZR87_RS15425 0.45 -0.5 3,246,847 + ABZR87_RS15425 0.59 -1.8 3,246,848 - ABZR87_RS15425 0.60 -0.9 3,246,848 - ABZR87_RS15425 0.60 -1.2 3,247,009 - ABZR87_RS15425 0.85 -2.2 3,247,106 - -0.3 3,247,106 - -1.8 3,247,195 + ABZR87_RS15430 0.14 +0.5 3,247,196 - ABZR87_RS15430 0.14 -0.2 3,247,196 - ABZR87_RS15430 0.14 -0.6 3,247,196 - ABZR87_RS15430 0.14 -1.0 3,247,196 - ABZR87_RS15430 0.14 +1.5 3,247,232 + ABZR87_RS15430 0.22 -0.0 3,247,232 + ABZR87_RS15430 0.22 +0.4
Or see this region's nucleotide sequence