Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15395

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15390 and ABZR87_RS15395 are separated by 65 nucleotidesABZR87_RS15395 and ABZR87_RS15400 are separated by 71 nucleotides ABZR87_RS15390: ABZR87_RS15390 - NCS1 family nucleobase:cation symporter-1, at 3,238,530 to 3,240,008 _RS15390 ABZR87_RS15395: ABZR87_RS15395 - uracil phosphoribosyltransferase, at 3,240,074 to 3,240,724 _RS15395 ABZR87_RS15400: ABZR87_RS15400 - helicase HerA-like C-terminal domain-containing protein, at 3,240,796 to 3,242,361 _RS15400 Position (kb) 3240 3241Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3239.157 kb on + strand, within ABZR87_RS15390at 3239.158 kb on - strand, within ABZR87_RS15390at 3239.158 kb on - strand, within ABZR87_RS15390at 3239.158 kb on - strand, within ABZR87_RS15390at 3239.158 kb on - strand, within ABZR87_RS15390at 3239.158 kb on - strand, within ABZR87_RS15390at 3239.158 kb on - strand, within ABZR87_RS15390at 3239.158 kb on - strand, within ABZR87_RS15390at 3239.158 kb on - strand, within ABZR87_RS15390at 3239.277 kb on + strand, within ABZR87_RS15390at 3239.430 kb on + strand, within ABZR87_RS15390at 3239.431 kb on - strand, within ABZR87_RS15390at 3239.431 kb on - strand, within ABZR87_RS15390at 3239.562 kb on + strand, within ABZR87_RS15390at 3239.614 kb on - strand, within ABZR87_RS15390at 3239.614 kb on - strand, within ABZR87_RS15390at 3239.614 kb on - strand, within ABZR87_RS15390at 3239.676 kb on + strand, within ABZR87_RS15390at 3239.676 kb on + strand, within ABZR87_RS15390at 3239.676 kb on + strand, within ABZR87_RS15390at 3239.676 kb on + strand, within ABZR87_RS15390at 3239.676 kb on + strand, within ABZR87_RS15390at 3239.677 kb on - strand, within ABZR87_RS15390at 3239.677 kb on - strand, within ABZR87_RS15390at 3239.677 kb on - strand, within ABZR87_RS15390at 3239.745 kb on + strand, within ABZR87_RS15390at 3239.745 kb on + strand, within ABZR87_RS15390at 3239.745 kb on + strand, within ABZR87_RS15390at 3239.745 kb on + strand, within ABZR87_RS15390at 3239.746 kb on - strand, within ABZR87_RS15390at 3239.746 kb on - strand, within ABZR87_RS15390at 3239.746 kb on - strand, within ABZR87_RS15390at 3239.794 kb on + strand, within ABZR87_RS15390at 3239.812 kb on - strand, within ABZR87_RS15390at 3239.934 kb on + strandat 3239.934 kb on + strandat 3239.934 kb on - strandat 3239.935 kb on - strandat 3239.935 kb on - strandat 3239.935 kb on - strandat 3239.935 kb on - strandat 3239.940 kb on + strandat 3239.940 kb on + strandat 3239.940 kb on + strandat 3239.941 kb on - strandat 3239.941 kb on - strandat 3239.941 kb on - strandat 3239.941 kb on - strandat 3239.941 kb on - strandat 3239.941 kb on - strandat 3239.941 kb on - strandat 3239.941 kb on - strandat 3239.979 kb on + strandat 3239.979 kb on + strandat 3239.979 kb on + strandat 3239.979 kb on + strandat 3239.979 kb on + strandat 3239.979 kb on + strandat 3239.980 kb on - strandat 3239.980 kb on - strandat 3239.980 kb on - strandat 3239.980 kb on - strandat 3239.980 kb on - strandat 3240.040 kb on + strandat 3240.040 kb on + strandat 3240.041 kb on - strandat 3240.340 kb on + strand, within ABZR87_RS15395at 3240.340 kb on + strand, within ABZR87_RS15395at 3240.668 kb on + strandat 3240.668 kb on + strandat 3240.669 kb on - strandat 3241.472 kb on + strand, within ABZR87_RS15400at 3241.472 kb on + strand, within ABZR87_RS15400at 3241.473 kb on - strand, within ABZR87_RS15400at 3241.662 kb on - strand, within ABZR87_RS15400at 3241.662 kb on - strand, within ABZR87_RS15400at 3241.662 kb on - strand, within ABZR87_RS15400at 3241.662 kb on - strand, within ABZR87_RS15400

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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3,239,157 + ABZR87_RS15390 0.42 -2.1
3,239,158 - ABZR87_RS15390 0.42 +0.3
3,239,158 - ABZR87_RS15390 0.42 +0.2
3,239,158 - ABZR87_RS15390 0.42 -1.6
3,239,158 - ABZR87_RS15390 0.42 +0.7
3,239,158 - ABZR87_RS15390 0.42 +1.8
3,239,158 - ABZR87_RS15390 0.42 +0.5
3,239,158 - ABZR87_RS15390 0.42 +0.2
3,239,158 - ABZR87_RS15390 0.42 -0.4
3,239,277 + ABZR87_RS15390 0.51 +0.3
3,239,430 + ABZR87_RS15390 0.61 -0.8
3,239,431 - ABZR87_RS15390 0.61 -2.6
3,239,431 - ABZR87_RS15390 0.61 +0.7
3,239,562 + ABZR87_RS15390 0.70 +1.2
3,239,614 - ABZR87_RS15390 0.73 +1.2
3,239,614 - ABZR87_RS15390 0.73 -0.2
3,239,614 - ABZR87_RS15390 0.73 +0.6
3,239,676 + ABZR87_RS15390 0.77 +1.1
3,239,676 + ABZR87_RS15390 0.77 +2.0
3,239,676 + ABZR87_RS15390 0.77 -0.7
3,239,676 + ABZR87_RS15390 0.77 +0.3
3,239,676 + ABZR87_RS15390 0.77 -0.7
3,239,677 - ABZR87_RS15390 0.78 +1.8
3,239,677 - ABZR87_RS15390 0.78 -2.0
3,239,677 - ABZR87_RS15390 0.78 -2.9
3,239,745 + ABZR87_RS15390 0.82 +0.4
3,239,745 + ABZR87_RS15390 0.82 -1.0
3,239,745 + ABZR87_RS15390 0.82 +1.2
3,239,745 + ABZR87_RS15390 0.82 -2.2
3,239,746 - ABZR87_RS15390 0.82 +0.3
3,239,746 - ABZR87_RS15390 0.82 +0.4
3,239,746 - ABZR87_RS15390 0.82 -0.8
3,239,794 + ABZR87_RS15390 0.85 -0.1
3,239,812 - ABZR87_RS15390 0.87 -0.0
3,239,934 + +1.7
3,239,934 + -1.3
3,239,934 - -1.0
3,239,935 - +0.2
3,239,935 - -0.1
3,239,935 - -2.9
3,239,935 - +0.8
3,239,940 + -1.1
3,239,940 + +1.7
3,239,940 + +1.1
3,239,941 - -0.2
3,239,941 - -0.1
3,239,941 - -2.1
3,239,941 - +0.1
3,239,941 - -0.9
3,239,941 - -2.5
3,239,941 - +2.6
3,239,941 - +0.7
3,239,979 + +0.1
3,239,979 + +1.3
3,239,979 + +1.2
3,239,979 + +1.4
3,239,979 + +2.0
3,239,979 + +0.2
3,239,980 - +2.2
3,239,980 - -0.5
3,239,980 - +0.7
3,239,980 - +0.7
3,239,980 - -1.7
3,240,040 + +0.3
3,240,040 + -1.7
3,240,041 - -1.9
3,240,340 + ABZR87_RS15395 0.41 -1.8
3,240,340 + ABZR87_RS15395 0.41 -2.0
3,240,668 + +1.8
3,240,668 + -1.9
3,240,669 - -0.4
3,241,472 + ABZR87_RS15400 0.43 +1.5
3,241,472 + ABZR87_RS15400 0.43 -2.5
3,241,473 - ABZR87_RS15400 0.43 +0.9
3,241,662 - ABZR87_RS15400 0.55 -0.1
3,241,662 - ABZR87_RS15400 0.55 +1.6
3,241,662 - ABZR87_RS15400 0.55 -2.8
3,241,662 - ABZR87_RS15400 0.55 +0.8

Or see this region's nucleotide sequence