Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14805

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14795 and ABZR87_RS14800 are separated by 84 nucleotidesABZR87_RS14800 and ABZR87_RS14805 are separated by 137 nucleotidesABZR87_RS14805 and ABZR87_RS14810 are separated by 44 nucleotidesABZR87_RS14810 and ABZR87_RS14815 are separated by 13 nucleotides ABZR87_RS14795: ABZR87_RS14795 - acyl-CoA dehydrogenase family protein, at 3,123,087 to 3,124,283 _RS14795 ABZR87_RS14800: ABZR87_RS14800 - DUF1178 family protein, at 3,124,368 to 3,124,829 _RS14800 ABZR87_RS14805: ABZR87_RS14805 - NUDIX hydrolase, at 3,124,967 to 3,125,578 _RS14805 ABZR87_RS14810: ABZR87_RS14810 - DUF2818 family protein, at 3,125,623 to 3,125,937 _RS14810 ABZR87_RS14815: ABZR87_RS14815 - NADH-quinone oxidoreductase subunit NuoN, at 3,125,951 to 3,127,426 _RS14815 Position (kb) 3124 3125 3126Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3124.270 kb on + strandat 3124.369 kb on + strandat 3124.369 kb on + strandat 3124.369 kb on + strandat 3124.370 kb on - strandat 3124.495 kb on + strand, within ABZR87_RS14800at 3124.496 kb on - strand, within ABZR87_RS14800at 3124.496 kb on - strand, within ABZR87_RS14800at 3124.544 kb on + strand, within ABZR87_RS14800at 3124.544 kb on + strand, within ABZR87_RS14800at 3124.576 kb on + strand, within ABZR87_RS14800at 3124.576 kb on + strand, within ABZR87_RS14800at 3124.577 kb on - strand, within ABZR87_RS14800at 3124.857 kb on + strandat 3124.858 kb on - strandat 3124.858 kb on - strandat 3124.891 kb on + strandat 3125.157 kb on + strand, within ABZR87_RS14805at 3125.158 kb on - strand, within ABZR87_RS14805at 3125.181 kb on + strand, within ABZR87_RS14805at 3125.211 kb on + strand, within ABZR87_RS14805at 3125.212 kb on - strand, within ABZR87_RS14805at 3125.212 kb on - strand, within ABZR87_RS14805at 3125.212 kb on - strand, within ABZR87_RS14805at 3125.413 kb on - strand, within ABZR87_RS14805at 3125.413 kb on - strand, within ABZR87_RS14805at 3125.476 kb on + strand, within ABZR87_RS14805at 3125.625 kb on - strandat 3125.625 kb on - strandat 3125.654 kb on + strandat 3125.953 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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3,124,270 + -0.5
3,124,369 + -0.8
3,124,369 + +0.7
3,124,369 + +1.3
3,124,370 - -2.8
3,124,495 + ABZR87_RS14800 0.27 -3.9
3,124,496 - ABZR87_RS14800 0.28 +1.5
3,124,496 - ABZR87_RS14800 0.28 +1.9
3,124,544 + ABZR87_RS14800 0.38 -2.0
3,124,544 + ABZR87_RS14800 0.38 -2.8
3,124,576 + ABZR87_RS14800 0.45 +1.7
3,124,576 + ABZR87_RS14800 0.45 +1.5
3,124,577 - ABZR87_RS14800 0.45 +1.7
3,124,857 + -2.9
3,124,858 - +1.1
3,124,858 - +0.6
3,124,891 + -0.0
3,125,157 + ABZR87_RS14805 0.31 +1.1
3,125,158 - ABZR87_RS14805 0.31 +1.6
3,125,181 + ABZR87_RS14805 0.35 +0.8
3,125,211 + ABZR87_RS14805 0.40 +1.7
3,125,212 - ABZR87_RS14805 0.40 +2.5
3,125,212 - ABZR87_RS14805 0.40 -0.2
3,125,212 - ABZR87_RS14805 0.40 +1.4
3,125,413 - ABZR87_RS14805 0.73 +2.6
3,125,413 - ABZR87_RS14805 0.73 -1.6
3,125,476 + ABZR87_RS14805 0.83 -0.9
3,125,625 - +0.4
3,125,625 - +1.4
3,125,654 + -1.3
3,125,953 - -0.1

Or see this region's nucleotide sequence