Experiment: 4-Hydroxybenzoic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS12295 and ABZR87_RS12300 are separated by 32 nucleotides ABZR87_RS12300 and ABZR87_RS12305 are separated by 43 nucleotides ABZR87_RS12305 and ABZR87_RS12310 are separated by 28 nucleotides
ABZR87_RS12295: ABZR87_RS12295 - muconate/chloromuconate family cycloisomerase, at 2,609,568 to 2,610,677
_RS12295
ABZR87_RS12300: ABZR87_RS12300 - muconolactone Delta-isomerase, at 2,610,710 to 2,611,000
_RS12300
ABZR87_RS12305: ABZR87_RS12305 - catechol 1,2-dioxygenase, at 2,611,044 to 2,611,979
_RS12305
ABZR87_RS12310: ABZR87_RS12310 - Rieske 2Fe-2S domain-containing protein, at 2,612,008 to 2,613,366
_RS12310
Position (kb)
2611
2612 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2610.100 kb on + strand, within ABZR87_RS12295 at 2610.100 kb on + strand, within ABZR87_RS12295 at 2610.100 kb on + strand, within ABZR87_RS12295 at 2610.101 kb on - strand, within ABZR87_RS12295 at 2610.101 kb on - strand, within ABZR87_RS12295 at 2610.101 kb on - strand, within ABZR87_RS12295 at 2610.101 kb on - strand, within ABZR87_RS12295 at 2610.101 kb on - strand, within ABZR87_RS12295 at 2610.101 kb on - strand, within ABZR87_RS12295 at 2610.448 kb on - strand, within ABZR87_RS12295 at 2610.676 kb on - strand at 2610.676 kb on - strand at 2610.797 kb on + strand, within ABZR87_RS12300 at 2610.798 kb on - strand, within ABZR87_RS12300 at 2610.798 kb on - strand, within ABZR87_RS12300 at 2610.875 kb on + strand, within ABZR87_RS12300 at 2610.935 kb on + strand, within ABZR87_RS12300 at 2610.935 kb on + strand, within ABZR87_RS12300 at 2610.935 kb on + strand, within ABZR87_RS12300 at 2611.057 kb on + strand at 2611.058 kb on - strand at 2611.290 kb on + strand, within ABZR87_RS12305 at 2611.291 kb on - strand, within ABZR87_RS12305 at 2611.291 kb on - strand, within ABZR87_RS12305 at 2611.371 kb on + strand, within ABZR87_RS12305 at 2611.371 kb on + strand, within ABZR87_RS12305 at 2611.372 kb on - strand, within ABZR87_RS12305 at 2611.372 kb on - strand, within ABZR87_RS12305 at 2611.372 kb on - strand, within ABZR87_RS12305 at 2611.372 kb on - strand, within ABZR87_RS12305 at 2611.533 kb on + strand, within ABZR87_RS12305 at 2611.884 kb on + strand, within ABZR87_RS12305 at 2611.885 kb on - strand, within ABZR87_RS12305 at 2611.885 kb on - strand, within ABZR87_RS12305 at 2611.885 kb on - strand, within ABZR87_RS12305 at 2612.170 kb on + strand, within ABZR87_RS12310 at 2612.170 kb on + strand, within ABZR87_RS12310 at 2612.171 kb on - strand, within ABZR87_RS12310 at 2612.209 kb on + strand, within ABZR87_RS12310 at 2612.210 kb on - strand, within ABZR87_RS12310 at 2612.212 kb on + strand, within ABZR87_RS12310 at 2612.213 kb on - strand, within ABZR87_RS12310 at 2612.213 kb on - strand, within ABZR87_RS12310 at 2612.213 kb on - strand, within ABZR87_RS12310 at 2612.485 kb on + strand, within ABZR87_RS12310 at 2612.485 kb on + strand, within ABZR87_RS12310 at 2612.539 kb on + strand, within ABZR87_RS12310 at 2612.539 kb on + strand, within ABZR87_RS12310 at 2612.540 kb on - strand, within ABZR87_RS12310 at 2612.623 kb on + strand, within ABZR87_RS12310 at 2612.623 kb on + strand, within ABZR87_RS12310 at 2612.623 kb on + strand, within ABZR87_RS12310 at 2612.624 kb on - strand, within ABZR87_RS12310 at 2612.624 kb on - strand, within ABZR87_RS12310 at 2612.624 kb on - strand, within ABZR87_RS12310 at 2612.624 kb on - strand, within ABZR87_RS12310 at 2612.624 kb on - strand, within ABZR87_RS12310 at 2612.629 kb on + strand, within ABZR87_RS12310 at 2612.629 kb on + strand, within ABZR87_RS12310 at 2612.701 kb on + strand, within ABZR87_RS12310 at 2612.701 kb on + strand, within ABZR87_RS12310 at 2612.702 kb on - strand, within ABZR87_RS12310 at 2612.702 kb on - strand, within ABZR87_RS12310 at 2612.785 kb on + strand, within ABZR87_RS12310 at 2612.851 kb on + strand, within ABZR87_RS12310 at 2612.935 kb on + strand, within ABZR87_RS12310 at 2612.936 kb on - strand, within ABZR87_RS12310
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C) remove 2,610,100 + ABZR87_RS12295 0.48 -2.7 2,610,100 + ABZR87_RS12295 0.48 -2.5 2,610,100 + ABZR87_RS12295 0.48 -2.6 2,610,101 - ABZR87_RS12295 0.48 -1.3 2,610,101 - ABZR87_RS12295 0.48 -2.7 2,610,101 - ABZR87_RS12295 0.48 -0.7 2,610,101 - ABZR87_RS12295 0.48 +0.7 2,610,101 - ABZR87_RS12295 0.48 +0.6 2,610,101 - ABZR87_RS12295 0.48 +1.5 2,610,448 - ABZR87_RS12295 0.79 +0.7 2,610,676 - +0.8 2,610,676 - -3.3 2,610,797 + ABZR87_RS12300 0.30 -0.1 2,610,798 - ABZR87_RS12300 0.30 +1.9 2,610,798 - ABZR87_RS12300 0.30 -0.2 2,610,875 + ABZR87_RS12300 0.57 +1.6 2,610,935 + ABZR87_RS12300 0.77 -0.0 2,610,935 + ABZR87_RS12300 0.77 +0.1 2,610,935 + ABZR87_RS12300 0.77 +1.2 2,611,057 + +0.2 2,611,058 - +1.1 2,611,290 + ABZR87_RS12305 0.26 +1.6 2,611,291 - ABZR87_RS12305 0.26 -0.5 2,611,291 - ABZR87_RS12305 0.26 +3.0 2,611,371 + ABZR87_RS12305 0.35 -2.7 2,611,371 + ABZR87_RS12305 0.35 -0.7 2,611,372 - ABZR87_RS12305 0.35 +1.5 2,611,372 - ABZR87_RS12305 0.35 -1.4 2,611,372 - ABZR87_RS12305 0.35 -2.2 2,611,372 - ABZR87_RS12305 0.35 -0.1 2,611,533 + ABZR87_RS12305 0.52 +0.0 2,611,884 + ABZR87_RS12305 0.90 -0.4 2,611,885 - ABZR87_RS12305 0.90 +1.2 2,611,885 - ABZR87_RS12305 0.90 -1.9 2,611,885 - ABZR87_RS12305 0.90 +2.6 2,612,170 + ABZR87_RS12310 0.12 -0.5 2,612,170 + ABZR87_RS12310 0.12 -1.9 2,612,171 - ABZR87_RS12310 0.12 +2.0 2,612,209 + ABZR87_RS12310 0.15 -1.6 2,612,210 - ABZR87_RS12310 0.15 +0.7 2,612,212 + ABZR87_RS12310 0.15 +1.0 2,612,213 - ABZR87_RS12310 0.15 -1.1 2,612,213 - ABZR87_RS12310 0.15 +0.5 2,612,213 - ABZR87_RS12310 0.15 -1.5 2,612,485 + ABZR87_RS12310 0.35 -2.3 2,612,485 + ABZR87_RS12310 0.35 +0.4 2,612,539 + ABZR87_RS12310 0.39 -0.2 2,612,539 + ABZR87_RS12310 0.39 +0.3 2,612,540 - ABZR87_RS12310 0.39 -0.3 2,612,623 + ABZR87_RS12310 0.45 +0.8 2,612,623 + ABZR87_RS12310 0.45 -2.7 2,612,623 + ABZR87_RS12310 0.45 +1.8 2,612,624 - ABZR87_RS12310 0.45 -1.1 2,612,624 - ABZR87_RS12310 0.45 +1.0 2,612,624 - ABZR87_RS12310 0.45 +2.5 2,612,624 - ABZR87_RS12310 0.45 -1.0 2,612,624 - ABZR87_RS12310 0.45 +1.5 2,612,629 + ABZR87_RS12310 0.46 -1.2 2,612,629 + ABZR87_RS12310 0.46 -0.1 2,612,701 + ABZR87_RS12310 0.51 +0.7 2,612,701 + ABZR87_RS12310 0.51 -0.7 2,612,702 - ABZR87_RS12310 0.51 +1.1 2,612,702 - ABZR87_RS12310 0.51 +1.8 2,612,785 + ABZR87_RS12310 0.57 -0.7 2,612,851 + ABZR87_RS12310 0.62 +1.1 2,612,935 + ABZR87_RS12310 0.68 -0.1 2,612,936 - ABZR87_RS12310 0.68 +0.1
Or see this region's nucleotide sequence