Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS12305

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS12295 and ABZR87_RS12300 are separated by 32 nucleotidesABZR87_RS12300 and ABZR87_RS12305 are separated by 43 nucleotidesABZR87_RS12305 and ABZR87_RS12310 are separated by 28 nucleotides ABZR87_RS12295: ABZR87_RS12295 - muconate/chloromuconate family cycloisomerase, at 2,609,568 to 2,610,677 _RS12295 ABZR87_RS12300: ABZR87_RS12300 - muconolactone Delta-isomerase, at 2,610,710 to 2,611,000 _RS12300 ABZR87_RS12305: ABZR87_RS12305 - catechol 1,2-dioxygenase, at 2,611,044 to 2,611,979 _RS12305 ABZR87_RS12310: ABZR87_RS12310 - Rieske 2Fe-2S domain-containing protein, at 2,612,008 to 2,613,366 _RS12310 Position (kb) 2611 2612Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2610.100 kb on + strand, within ABZR87_RS12295at 2610.100 kb on + strand, within ABZR87_RS12295at 2610.100 kb on + strand, within ABZR87_RS12295at 2610.101 kb on - strand, within ABZR87_RS12295at 2610.101 kb on - strand, within ABZR87_RS12295at 2610.101 kb on - strand, within ABZR87_RS12295at 2610.101 kb on - strand, within ABZR87_RS12295at 2610.101 kb on - strand, within ABZR87_RS12295at 2610.101 kb on - strand, within ABZR87_RS12295at 2610.448 kb on - strand, within ABZR87_RS12295at 2610.676 kb on - strandat 2610.676 kb on - strandat 2610.797 kb on + strand, within ABZR87_RS12300at 2610.798 kb on - strand, within ABZR87_RS12300at 2610.798 kb on - strand, within ABZR87_RS12300at 2610.875 kb on + strand, within ABZR87_RS12300at 2610.935 kb on + strand, within ABZR87_RS12300at 2610.935 kb on + strand, within ABZR87_RS12300at 2610.935 kb on + strand, within ABZR87_RS12300at 2611.057 kb on + strandat 2611.058 kb on - strandat 2611.290 kb on + strand, within ABZR87_RS12305at 2611.291 kb on - strand, within ABZR87_RS12305at 2611.291 kb on - strand, within ABZR87_RS12305at 2611.371 kb on + strand, within ABZR87_RS12305at 2611.371 kb on + strand, within ABZR87_RS12305at 2611.372 kb on - strand, within ABZR87_RS12305at 2611.372 kb on - strand, within ABZR87_RS12305at 2611.372 kb on - strand, within ABZR87_RS12305at 2611.372 kb on - strand, within ABZR87_RS12305at 2611.533 kb on + strand, within ABZR87_RS12305at 2611.884 kb on + strand, within ABZR87_RS12305at 2611.885 kb on - strand, within ABZR87_RS12305at 2611.885 kb on - strand, within ABZR87_RS12305at 2611.885 kb on - strand, within ABZR87_RS12305at 2612.170 kb on + strand, within ABZR87_RS12310at 2612.170 kb on + strand, within ABZR87_RS12310at 2612.171 kb on - strand, within ABZR87_RS12310at 2612.209 kb on + strand, within ABZR87_RS12310at 2612.210 kb on - strand, within ABZR87_RS12310at 2612.212 kb on + strand, within ABZR87_RS12310at 2612.213 kb on - strand, within ABZR87_RS12310at 2612.213 kb on - strand, within ABZR87_RS12310at 2612.213 kb on - strand, within ABZR87_RS12310at 2612.485 kb on + strand, within ABZR87_RS12310at 2612.485 kb on + strand, within ABZR87_RS12310at 2612.539 kb on + strand, within ABZR87_RS12310at 2612.539 kb on + strand, within ABZR87_RS12310at 2612.540 kb on - strand, within ABZR87_RS12310at 2612.623 kb on + strand, within ABZR87_RS12310at 2612.623 kb on + strand, within ABZR87_RS12310at 2612.623 kb on + strand, within ABZR87_RS12310at 2612.624 kb on - strand, within ABZR87_RS12310at 2612.624 kb on - strand, within ABZR87_RS12310at 2612.624 kb on - strand, within ABZR87_RS12310at 2612.624 kb on - strand, within ABZR87_RS12310at 2612.624 kb on - strand, within ABZR87_RS12310at 2612.629 kb on + strand, within ABZR87_RS12310at 2612.629 kb on + strand, within ABZR87_RS12310at 2612.701 kb on + strand, within ABZR87_RS12310at 2612.701 kb on + strand, within ABZR87_RS12310at 2612.702 kb on - strand, within ABZR87_RS12310at 2612.702 kb on - strand, within ABZR87_RS12310at 2612.785 kb on + strand, within ABZR87_RS12310at 2612.851 kb on + strand, within ABZR87_RS12310at 2612.935 kb on + strand, within ABZR87_RS12310at 2612.936 kb on - strand, within ABZR87_RS12310

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,610,100 + ABZR87_RS12295 0.48 -2.7
2,610,100 + ABZR87_RS12295 0.48 -2.5
2,610,100 + ABZR87_RS12295 0.48 -2.6
2,610,101 - ABZR87_RS12295 0.48 -1.3
2,610,101 - ABZR87_RS12295 0.48 -2.7
2,610,101 - ABZR87_RS12295 0.48 -0.7
2,610,101 - ABZR87_RS12295 0.48 +0.7
2,610,101 - ABZR87_RS12295 0.48 +0.6
2,610,101 - ABZR87_RS12295 0.48 +1.5
2,610,448 - ABZR87_RS12295 0.79 +0.7
2,610,676 - +0.8
2,610,676 - -3.3
2,610,797 + ABZR87_RS12300 0.30 -0.1
2,610,798 - ABZR87_RS12300 0.30 +1.9
2,610,798 - ABZR87_RS12300 0.30 -0.2
2,610,875 + ABZR87_RS12300 0.57 +1.6
2,610,935 + ABZR87_RS12300 0.77 -0.0
2,610,935 + ABZR87_RS12300 0.77 +0.1
2,610,935 + ABZR87_RS12300 0.77 +1.2
2,611,057 + +0.2
2,611,058 - +1.1
2,611,290 + ABZR87_RS12305 0.26 +1.6
2,611,291 - ABZR87_RS12305 0.26 -0.5
2,611,291 - ABZR87_RS12305 0.26 +3.0
2,611,371 + ABZR87_RS12305 0.35 -2.7
2,611,371 + ABZR87_RS12305 0.35 -0.7
2,611,372 - ABZR87_RS12305 0.35 +1.5
2,611,372 - ABZR87_RS12305 0.35 -1.4
2,611,372 - ABZR87_RS12305 0.35 -2.2
2,611,372 - ABZR87_RS12305 0.35 -0.1
2,611,533 + ABZR87_RS12305 0.52 +0.0
2,611,884 + ABZR87_RS12305 0.90 -0.4
2,611,885 - ABZR87_RS12305 0.90 +1.2
2,611,885 - ABZR87_RS12305 0.90 -1.9
2,611,885 - ABZR87_RS12305 0.90 +2.6
2,612,170 + ABZR87_RS12310 0.12 -0.5
2,612,170 + ABZR87_RS12310 0.12 -1.9
2,612,171 - ABZR87_RS12310 0.12 +2.0
2,612,209 + ABZR87_RS12310 0.15 -1.6
2,612,210 - ABZR87_RS12310 0.15 +0.7
2,612,212 + ABZR87_RS12310 0.15 +1.0
2,612,213 - ABZR87_RS12310 0.15 -1.1
2,612,213 - ABZR87_RS12310 0.15 +0.5
2,612,213 - ABZR87_RS12310 0.15 -1.5
2,612,485 + ABZR87_RS12310 0.35 -2.3
2,612,485 + ABZR87_RS12310 0.35 +0.4
2,612,539 + ABZR87_RS12310 0.39 -0.2
2,612,539 + ABZR87_RS12310 0.39 +0.3
2,612,540 - ABZR87_RS12310 0.39 -0.3
2,612,623 + ABZR87_RS12310 0.45 +0.8
2,612,623 + ABZR87_RS12310 0.45 -2.7
2,612,623 + ABZR87_RS12310 0.45 +1.8
2,612,624 - ABZR87_RS12310 0.45 -1.1
2,612,624 - ABZR87_RS12310 0.45 +1.0
2,612,624 - ABZR87_RS12310 0.45 +2.5
2,612,624 - ABZR87_RS12310 0.45 -1.0
2,612,624 - ABZR87_RS12310 0.45 +1.5
2,612,629 + ABZR87_RS12310 0.46 -1.2
2,612,629 + ABZR87_RS12310 0.46 -0.1
2,612,701 + ABZR87_RS12310 0.51 +0.7
2,612,701 + ABZR87_RS12310 0.51 -0.7
2,612,702 - ABZR87_RS12310 0.51 +1.1
2,612,702 - ABZR87_RS12310 0.51 +1.8
2,612,785 + ABZR87_RS12310 0.57 -0.7
2,612,851 + ABZR87_RS12310 0.62 +1.1
2,612,935 + ABZR87_RS12310 0.68 -0.1
2,612,936 - ABZR87_RS12310 0.68 +0.1

Or see this region's nucleotide sequence