Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11970

Experiment: 4-Hydroxybenzoic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS11965 and ABZR87_RS11970 are separated by 123 nucleotidesABZR87_RS11970 and ABZR87_RS11975 overlap by 26 nucleotides ABZR87_RS11965: ABZR87_RS11965 - IMP dehydrogenase, at 2,540,046 to 2,541,509 _RS11965 ABZR87_RS11970: ABZR87_RS11970 - hypothetical protein, at 2,541,633 to 2,542,211 _RS11970 ABZR87_RS11975: ABZR87_RS11975 - glutamine-hydrolyzing GMP synthase, at 2,542,186 to 2,543,805 _RS11975 Position (kb) 2541 2542 2543Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2541.536 kb on + strandat 2541.536 kb on + strandat 2541.536 kb on + strandat 2541.550 kb on + strandat 2541.550 kb on + strandat 2541.765 kb on + strand, within ABZR87_RS11970at 2542.116 kb on + strand, within ABZR87_RS11970

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxybenzoic Acid (C)
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2,541,536 + -2.9
2,541,536 + +0.7
2,541,536 + -2.3
2,541,550 + -1.8
2,541,550 + +1.3
2,541,765 + ABZR87_RS11970 0.23 +1.8
2,542,116 + ABZR87_RS11970 0.83 -1.7

Or see this region's nucleotide sequence